BAC Information

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BAC

Clone NameB6Ng01-132L09
Chromosome10 (Build37)
Map Location 99,880,597 - 100,036,344
singlet/doubletdoublet
Overlap geneTmtc3, 4930430F08Rik
Upstream geneGad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051
Downstream gene1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132L09.bB6Ng01-132L09.g
ACCDH933443DH933444
length4231,189
definitionDH933443|Mus musculus domesticus DNA, BAC clone: B6Ng01-132L09, 5' end.DH933444|Mus musculus domesticus DNA, BAC clone: B6Ng01-132L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,880,597 - 99,881,025)(100,035,137 - 100,036,344)
sequence
taggattagtcacattgctttgttcttacttttgtgccctttgccaagac
tagtgccaaggatcttttttttttttttataccatgctaccttgtagaat
cttcaggctttatagttaatattttactctatttcaagttattgttgtat
gtggtgtgtgccatgaacagattccttttttttcctcagtgtttgataat
gaacacacgctaggtgagctcactgccattaacctaaatcactaaatcat
taaactagcattaatttcattctttgctggtgcatttccagacttcttgg
tttcattcatggaagagattttcatttcttaatgatcaggcttagggaga
gccagggagagggtgccattgtcagagtattggaccgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtg
gaattccaaaccagttattattaacatgaacctgaacctgaacaattatg
actgtgcttttgataaccagtctttgtttaatcagttttcaaaaatagat
aaacagaaatttgagagactcaaagacataatacttgatgtataaaatgg
aactaattgttgagattattgtgattttctaagactgaatagtttgcatt
taattttgctagctgtttggcaaaacctgtcaacttctaaacatgtttct
aggtatttatagaaatcatcgttaggatttgactatcttaacacaaaaat
aaatataaaataatcaattttaaatagtaaattgatataagcttaccttt
atgctttttgaaaatttaagttattatgaaaatagtaatatttatcatag
ctcattgtgcactgtatagtcataaattaatgaagtcttcaaaaatatac
ttttctaacaagttaaaactaaatatgatttttttaaacaaaaaaaatac
aatattttgagctgtaaattctataacacagagactgcttgatttccagc
tgaaacttttttcactcataaaatagttttaaacctgcagttacacgagg
gcactaataaatagggaaactatgaggactttctccatcttccgagtgtt
cagaagcagcaagaggactaggcagttcaaatccaaactgttccgacagt
ttttttagcttctcttctaataggatattctttttcacttcttccttata
attatacttcaggtcttcaatttcttcaaaaaatgaaggatcaaaatttt
ccagttcttttttcagctttttaacttcctcctaaaagttacatacagga
tacatgtttttggtttgaaattttagatttaattataaacataaaaactc
aaaatcttaaatgtaaatatttttctttatattttactgttcaaggttcc
gtgtaccatgtgaataatgtagaagctgccatctttagctaaattataga
taaatctttaaactgcctcgaatattcccaggcaagcgaaagggacttgc
ttttacaacaacattcaagagtttcagtatttataatgttctatttttat
cttttaaataaatactaggaatcatggacctgggactgggaaagttagga
cttgtgagtgcatgcttacagcacttcacagacagtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99880597_99881025
seq2: B6Ng01-132L09.b_49_477

seq1  GAATTCTAGGATTAGTCACATTGCTTTGTTCTTACTTTTGTGCCCTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGATTAGTCACATTGCTTTGTTCTTACTTTTGTGCCCTTTGC  50

seq1  CAAGACTAGTGCCAAGGATCTTTTTTTTTTTTTTATACCATGCTACCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTAGTGCCAAGGATCTTTTTTTTTTTTTTATACCATGCTACCTTG  100

seq1  TAGAATCTTCAGGCTTTATAGTTAATATTTTACTCTATTTCAAGTTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTTCAGGCTTTATAGTTAATATTTTACTCTATTTCAAGTTATTG  150

seq1  TTGTATGTGGTGTGTGCCATGAACAGATTCCTTTTTTTTCCTCAGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTGGTGTGTGCCATGAACAGATTCCTTTTTTTTCCTCAGTGTTT  200

seq1  GATAATGAACACACGCTAGGTGAGCTCACTGCCATTAACCTAAATCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGAACACACGCTAGGTGAGCTCACTGCCATTAACCTAAATCACTA  250

seq1  AATCATTAAACTAGCATTAATTTCATTCTTTGCTGGTGCATTTCCAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAAACTAGCATTAATTTCATTCTTTGCTGGTGCATTTCCAGACT  300

seq1  TCTTGGTTTCATTCATGGAAGAGATTTTCATTTCTTAATGATCAGGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTCATTCATGGAAGAGATTTTCATTTCTTAATGATCAGGCTTA  350

seq1  GGGAGAGCCAGGGAGAGGGTGCCATTGTCAGAGTATTGGACCGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGCCAGGGAGAGGGTGCCATTGTCAGAGTATTGGACCGTGTGTGT  400

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTG  429
      |||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTG  429

seq1: chr10_100035137_100036344
seq2: B6Ng01-132L09.g_68_1256 (reverse)

seq1  GTCACTGGTCTGTGTAGATGCTGTAAGCATGCACTTCACCAGGTGCTTAA  50
      |||||| ||||||| || |||||||||||||||| ||| || || ||  |
seq2  GTCACT-GTCTGTGAAG-TGCTGTAAGCATGCAC-TCA-CAAGTCCT--A  44

seq1  CCTTTCCAAGTCCCAGGGTTCCCATGATCATAAGTATTATATATAAAAGA  100
       |||||| |||||||||    |||||||    |||||| ||| |||||||
seq2  ACTTTCCCAGTCCCAGG---TCCATGATTCCTAGTATT-TATTTAAAAGA  90

seq1  TAAAAAATTAGAACATTATAAATACTGAAAACTCTTGAATGTTGTTGTAA  150
      ||||||  ||||||||||||||||||| ||||||||||||||||||||  
seq2  TAAAAA--TAGAACATTATAAATACTG-AAACTCTTGAATGTTGTTGT--  135

seq1  AAAAGCAAAGTCCCTTTCGCTTGCCTGGGAATATCTGAGGCAGTTTAAAG  200
      |||||| |||||||||||||||||||||||||||  ||||||||||||||
seq2  AAAAGC-AAGTCCCTTTCGCTTGCCTGGGAATATTCGAGGCAGTTTAAAG  184

seq1  ATTTAATCTTATAATTTAGCTAAAGATGGCAGCTTCTACATTATTCACAT  250
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTT-ATC-TATAATTTAGCTAAAGATGGCAGCTTCTACATTATTCACAT  232

seq1  GGTACAACGGAACCTTGAACAGTAAAATATAAAGAAAAATATTTACATTT  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAC-ACGGAACCTTGAACAGTAAAATATAAAGAAAAATATTTACATTT  281

seq1  AAGATTTTGAGTTTTTATGTTTATAATTAAATCTAAAATTTCAAACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTGAGTTTTTATGTTTATAATTAAATCTAAAATTTCAAACCAAA  331

seq1  AACATGTATCCTGTATGTAACTTTTAGGAGGAAGTTAAAAAGCTGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATCCTGTATGTAACTTTTAGGAGGAAGTTAAAAAGCTGAAAAA  381

seq1  AGAACTGGAAAATTTTGATCCTTCATTTTTTGAAGAAATTGAAGACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGAAAATTTTGATCCTTCATTTTTTGAAGAAATTGAAGACCTGA  431

seq1  AGTATAATTATAAGGAAGAAGTGAAAAAGAATATCCTATTAGAAGAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATTATAAGGAAGAAGTGAAAAAGAATATCCTATTAGAAGAGAAG  481

seq1  CTAAAAAAACTGTCGGAACAGTTTGGATTTGAACTGCCTAGTCCTCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAACTGTCGGAACAGTTTGGATTTGAACTGCCTAGTCCTCTTGC  531

seq1  TGCTTCTGAACACTCGGAAGATGGAGAAAGTCCTCATAGTTTCCCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGAACACTCGGAAGATGGAGAAAGTCCTCATAGTTTCCCTATTT  581

seq1  ATTAGTGCCCTCGTGTAACTGCAGGTTTAAAACTATTTTATGAGTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGCCCTCGTGTAACTGCAGGTTTAAAACTATTTTATGAGTGAAAA  631

seq1  AAGTTTCAGCTGGAAATCAAGCAGTCTCTGTGTTATAGAATTTACAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAGCTGGAAATCAAGCAGTCTCTGTGTTATAGAATTTACAGCTC  681

seq1  AAAATATTGTATTTTTTTTGTTTAAAAAAATCATATTTAGTTTTAACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGTATTTTTTTTGTTTAAAAAAATCATATTTAGTTTTAACTTG  731

seq1  TTAGAAAAGTATATTTTTGAAGACTTCATTAATTTATGACTATACAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGTATATTTTTGAAGACTTCATTAATTTATGACTATACAGTGC  781

seq1  ACAATGAGCTATGATAAATATTACTATTTTCATAATAACTTAAATTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCTATGATAAATATTACTATTTTCATAATAACTTAAATTTTCA  831

seq1  AAAAGCATAAAGGTAAGCTTATATCAATTTACTATTTAAAATTGATTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATAAAGGTAAGCTTATATCAATTTACTATTTAAAATTGATTATT  881

seq1  TTATATTTATTTTTGTGTTAAGATAGTCAAATCCTAACGATGATTTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTATTTTTGTGTTAAGATAGTCAAATCCTAACGATGATTTCTAT  931

seq1  AAATACCTAGAAACATGTTTAGAAGTTGACAGGTTTTGCCAAACAGCTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAGAAACATGTTTAGAAGTTGACAGGTTTTGCCAAACAGCTAG  981

seq1  CAAAATTAAATGCAAACTATTCAGTCTTAGAAAATCACAATAATCTCAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAAATGCAAACTATTCAGTCTTAGAAAATCACAATAATCTCAAC  1031

seq1  AATTAGTTCCATTTTATACATCAAGTATTATGTCTTTGAGTCTCTCAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTCCATTTTATACATCAAGTATTATGTCTTTGAGTCTCTCAAAT  1081

seq1  TTCTGTTTATCTATTTTTGAAAACTGATTAAACAAAGACTGGTTATCAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTATCTATTTTTGAAAACTGATTAAACAAAGACTGGTTATCAAA  1131

seq1  AGCACAGTCATAATTGTTCAGGTTCAGGTTCATGTTAATAATAACTGGTT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTCATAATTGTTCAGGTTCAGGTTCATGTTAATAATAACTGGTT  1181

seq1  TGGAATTC  1208
      ||||||||
seq2  TGGAATTC  1189