BAC Information

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BAC

Clone NameB6Ng01-133M14
Chromosome4 (Build37)10 (Build37)
Map Location 134,145,470 - 134,145,52021,012,861 - 21,013,947
singlet/doubletsingletsinglet
Overlap geneMan1c1
Upstream geneAtpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133M14.bB6Ng01-133M14.g
ACCDH934246DH934247
length1391,073
definitionDH934246|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M14, 5' end.DH934247|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,145,470 - 134,145,520)(21,012,861 - 21,013,947)
sequence
ctcaaagacttaataagggaagaagaagaggaggaggaagaaggaggagg
aggaggggagaaggaggagtaggaagaggaagaagaagaggaagaagaag
gaggaggaggagaaggagaaaggatggggagaaggaagg
gaattctttctgaaagaaaaaggaataagctgttgattcaaggaccgacc
tctgtggctgaatgtcaaaacagttgagtaaatgaagatataaaaaagaa
cacgtactgtcaggtttcttctacatgaaggtcttaaaaatacgaatgga
gttttagtgacagaagctgatctgctgttgccaaaggccttgttagggag
ccgtgggagcagaaggatcccatgacattttcatatttttatattctgta
tagaaatgcttgagagtctacatatgttgtcttgattggggttggaggtt
tcactggcatttacatatgggcaaacattccagattatagacctaaaata
tgtcctgtttatggttttcaaagttactcagtaccactatcaacaggaag
ctttcaagttttatcttttgctgtgtgtcttagggttttattgctgcagc
aaaacaccgggaccaagaagcaagttgggggaaaagggtttattcagctt
acacttccacattgctgatcatcaccaaaagagagctaggactggaactc
atacagggtatgaacctagaggcaggagctgatgcagaggccatggaggg
atgctgcttactggattgcttcccctggcttgctcagcttgctttcttat
agaacccaggaccaccagcccagggatggcaccacccacagtgggctaga
ctctcacctgcttaatacttaacactgccttacagctggatctcatggac
atatttcttcaactgagactcctttctctctagattgtgtcaagtagata
caaaaccagccagtacagtgtgttaaaagactctgaccaaaaaaacccac
aaaacaaaaaccaaaaccaaaaaacaactatgggaggaaagggtttattt
ggcttacacttccaaggttgtttgtttgttggtttttgttttgtttgttt
gttttagatttattatttatgtatatgggtacactgcactgcttcagacc
acccagagagggcattagatcccattaaagaatggtagtgagccccatgg
gttgctggaattgatctcaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134145470_134145520
seq2: B6Ng01-133M14.b_138_194 (reverse)

seq1  CCTTCCTTCCTCCCTTC------CCTTCTCCTCCTCCTCCTTCTTCTTCT  44
      |||||||||  ||| ||      |||||||||||||||||||||||||| 
seq2  CCTTCCTTCTCCCCATCCTTTCTCCTTCTCCTCCTCCTCCTTCTTCTTCC  50

seq1  TCTTCTT  51
      |||||||
seq2  TCTTCTT  57

seq1: chr10_21012861_21013947
seq2: B6Ng01-133M14.g_69_1141

seq1  GAATTCTTTCTGAAAGAAAAAGGAATAAGCTGTTGATTCAAGGACCGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGAAAGAAAAAGGAATAAGCTGTTGATTCAAGGACCGACC  50

seq1  TCTGTGGCTGAATGTCAAAACAGTTGAGTAAATGAAGATATAAAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTGAATGTCAAAACAGTTGAGTAAATGAAGATATAAAAAAGAA  100

seq1  CACGTACTGTCAGGTTTCTTCTACATGAAGGTCTTAAAAATACGAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTACTGTCAGGTTTCTTCTACATGAAGGTCTTAAAAATACGAATGGA  150

seq1  GTTTTAGTGACAGAAGCTGATCTGCTGTTGCCAAAGGCCTTGTTAGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTGACAGAAGCTGATCTGCTGTTGCCAAAGGCCTTGTTAGGGAG  200

seq1  CCGTGGGAGCAGAAGGATCCCATGACATTTTCATATTTTTATATTCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGAGCAGAAGGATCCCATGACATTTTCATATTTTTATATTCTGTA  250

seq1  TAGAAATGCTTGAGAGTCTACATATGTTGTCTTGATTGGGGTTGGAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGCTTGAGAGTCTACATATGTTGTCTTGATTGGGGTTGGAGGTT  300

seq1  TCACTGGCATTTACATATGGGCAAACATTCCAGATTATAGACCTAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGCATTTACATATGGGCAAACATTCCAGATTATAGACCTAAAATA  350

seq1  TGTCCTGTTTATGGTTTTCAAAGTTACTCAGTACCACTATCAACAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTTTATGGTTTTCAAAGTTACTCAGTACCACTATCAACAGGAAG  400

seq1  CTTTCAAGTTTTATCTTTTGCTGTGTGTCTTAGGGTTTTATTGCTGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGTTTTATCTTTTGCTGTGTGTCTTAGGGTTTTATTGCTGCAGC  450

seq1  AAAACACCGGGACCAAGAAGCAAGTTGGGGGAAAAGGGTTTATTCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCGGGACCAAGAAGCAAGTTGGGGGAAAAGGGTTTATTCAGCTT  500

seq1  ACACTTCCACATTGCTGATCATCACCAAAAGAGAGCTAGGACTGGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCACATTGCTGATCATCACCAAAAGAGAGCTAGGACTGGAACTC  550

seq1  ATACAGGGTATGAACCTAGAGGCAGGAGCTGATGCAGAGGCCATGGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGGTATGAACCTAGAGGCAGGAGCTGATGCAGAGGCCATGGAGGG  600

seq1  ATGCTGCTTACTGGATTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTTACTGGATTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCTTAT  650

seq1  AGAACCCAGGACCACCAGCCCAGGGATGGCACCACCCACAGTGGGCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGGACCACCAGCCCAGGGATGGCACCACCCACAGTGGGCTAGA  700

seq1  CTCTCACCTGCTTAATACTTAACACTGCCTTACAGCTGGATCTCATGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCTGCTTAATACTTAACACTGCCTTACAGCTGGATCTCATGGAC  750

seq1  ATATTTCTTCAACTGAGACTCCTTTCTCTCTAGATTGTGTCAAGTAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTCAACTGAGACTCCTTTCTCTCTAGATTGTGTCAAGTAGATA  800

seq1  CAAAACCAGCCAGTACAGTGTGTTAAAAGACTCTGACCAAAAAAAACCCA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAACCAGCCAGTACAGTGTGTTAAAAGACTCTGACC-AAAAAAACCCA  849

seq1  CAAAAACAAAAACCAAAACCAAAAAAACAACTATGGGAGGAAAGGGTTTA  900
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  C-AAAACAAAAACCAAAACC-AAAAAACAACTATGGGAGGAAAGGGTTTA  897

seq1  TTTGGCTTACACTTCCAAGGTTGTTTGTTTGTTGGTTTTTGTTTTTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTGGCTTACACTTCCAAGGTTGTTTGTTTGTTGGTTTTTG-TTTTGTTT  946

seq1  TGTTTTGTTTTAAGATTTATTTATTTAATGTATATGGGTACACTGTCACT  1000
         |||||||| ||||||| |||||| |||||||||||||||||| ||||
seq2  --GTTTGTTTT-AGATTTA-TTATTT-ATGTATATGGGTACACTG-CACT  990

seq1  GTCTTCAGACACACCAGAAGAGGGCATAAGATCCCATTAGAG-ATGGTAG  1049
      | |||||||| ||||   ||||||||| ||||||||||| || |||||||
seq2  G-CTTCAGAC-CACCCAGAGAGGGCATTAGATCCCATTAAAGAATGGTAG  1038

seq1  TGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGAC  1087
      |||||| ||||| ||||||| |||||||| ||||||||
seq2  TGAGCC-CCATG-GGTTGCT-GGAATTGATCTCAGGAC  1073