BAC Information

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BAC

Clone NameB6Ng01-133O08
Chromosome10 (Build37)
Map Location 18,694,078 - 18,850,716
singlet/doubletdoublet
Overlap geneTnfaip3, Tpi-rs5
Upstream gene3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp
Downstream geneEG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133O08.bB6Ng01-133O08.g
ACCDH934329DH934330
length9901,073
definitionDH934329|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O08, 5' end.DH934330|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,850,151 - 18,850,716)(18,694,078 - 18,695,159)
sequence
gaattcattttctcacagttgagctagcagaccaaagtctaccttgaata
gcaatgtcttcttccagcttctagtgactggagcattccttggcttgtag
cctcttcctccacaatctcttctttgtatatccccctccctccctccttc
cctctctcctttctttctttccttccttcaatccatccctcccccctttc
atctgtccaatccgtccatccctctctcccttccttctttcctatgatgc
tgaagatcaaaaccacagaatatgacatgtatagacacttccttattaaa
gatcatttgactagagacatatctgctcctgacagcacccctttcctgga
ttcaaagaagaaattgagcatcagagcagagctccagttgtggcaagaca
gccactaggcaagaattacctcatttcatctacagacaaaatactgtcca
gaaaaaggacacactatgcgaaatagtctgactgatatctctgccaagat
agggtaatcagcccttcaaaattctactttacaaaggtctttcagatgat
cctgggccagacggctgaagactgatgctccaatgttttgaagtataagg
gcctgtccaggtgatcaatggtctctataaattggctaaattttggaatc
tctatctctatctctatctatctatctatctatctatctatctatctatc
tatctatctatctatctagttttttgagacagggtttctctgtgtagctt
tggctgtcctgaaactaactctgtagaccaggctggcctcgaactcagaa
atctgcctgtctctgcctcccaagttctgggattaaaggcatgtgccacc
actgcccggcagaagctatattttgtgcttctcatattttcaggtaatat
tagttgttcttagatttctgatagggttgtctcatagccaatccaagctg
tttagcatgaggaagatgatatagatttgagaggatggtt
gaattcccctggaccaaggcctatgctaaaatccttcgttctttacataa
ataaacacacaatacaatcttttggctagtatctaatcaaaacacataca
ggcaaaccagacttagcacatagcctggaaactcccagcttccaaacttc
aagaaggcagtcagaggctgcagttaaagctcgtgtacaaaatcccctga
tccccacaaatgacaaacagcggggcctttgctttctccagaccctttta
cggttccatggctaactctggaattagtgagggaaactgtttaatctgaa
ggttttttttttcttggaaagatgatgccacaaagtagtgaaaaagccct
agacaatcattcagacaaaacaaaacaaaaactaggcaacaaatgatctt
tttggcatagggatttgctattcttggcttctgtgctcctttcaaaatgg
acatgcaaagtcatatggttttggtttatttgaagcattgggatgcagaa
acgatccccctttcagttttctctaaaaatgtttttattacacttactca
ttgggtgttttgagggatcataaggctgtgggcatgtctttgttaaggtc
ttacagctgtgaacagacaccatgaccaagacaagtcttataagtacaac
gtttaattgggtctggcttacaggttcagaggttcagtccattatcatca
atgtgggagcatggcagcctccaggcaggcatagtgcaggaggagctgat
agttctacatcttgttccgaaggcaaacaggagaagactggcttccaggg
cttccagggagctaggaagaggatcttaaagcccatgcccacaatgacac
actttcaccaacaaggcctcaccttctagtgacactcactggaccaagca
tatttaaaccatcacacaggggtaaaggtcagacaggaacacgatcaaac
tcgggtgatcagcatggcagcaagtacctttactcactgacagcttacgg
tcactcagctttcactgaacaaatattgtataccatagcttattgtgacc
aaggcccaaaccatgaatgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18850151_18850716
seq2: B6Ng01-133O08.b_50_615 (reverse)

seq1  AGCCGTCTGGCCCAGGATCATCTGAAAGACCTTTGTAAAGTAGAATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTCTGGCCCAGGATCATCTGAAAGACCTTTGTAAAGTAGAATTTTG  50

seq1  AAGGGCTGATTACCCTATCTTGGCAGAGATATCAGTCAGACTATTTCGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGATTACCCTATCTTGGCAGAGATATCAGTCAGACTATTTCGCA  100

seq1  TAGTGTGTCCTTTTTCTGGACAGTATTTTGTCTGTAGATGAAATGAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTCCTTTTTCTGGACAGTATTTTGTCTGTAGATGAAATGAGGTA  150

seq1  ATTCTTGCCTAGTGGCTGTCTTGCCACAACTGGAGCTCTGCTCTGATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCCTAGTGGCTGTCTTGCCACAACTGGAGCTCTGCTCTGATGCT  200

seq1  CAATTTCTTCTTTGAATCCAGGAAAGGGGTGCTGTCAGGAGCAGATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTTCTTTGAATCCAGGAAAGGGGTGCTGTCAGGAGCAGATATGT  250

seq1  CTCTAGTCAAATGATCTTTAATAAGGAAGTGTCTATACATGTCATATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTCAAATGATCTTTAATAAGGAAGTGTCTATACATGTCATATTCT  300

seq1  GTGGTTTTGATCTTCAGCATCATAGGAAAGAAGGAAGGGAGAGAGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTGATCTTCAGCATCATAGGAAAGAAGGAAGGGAGAGAGGGATG  350

seq1  GACGGATTGGACAGATGAAAGGGGGGAGGGATGGATTGAAGGAAGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGATTGGACAGATGAAAGGGGGGAGGGATGGATTGAAGGAAGGAAAG  400

seq1  AAAGAAAGGAGAGAGGGAAGGAGGGAGGGAGGGGGATATACAAAGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGGAGAGAGGGAAGGAGGGAGGGAGGGGGATATACAAAGAAGAG  450

seq1  ATTGTGGAGGAAGAGGCTACAAGCCAAGGAATGCTCCAGTCACTAGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGAGGAAGAGGCTACAAGCCAAGGAATGCTCCAGTCACTAGAAGC  500

seq1  TGGAAGAAGACATTGCTATTCAAGGTAGACTTTGGTCTGCTAGCTCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAGACATTGCTATTCAAGGTAGACTTTGGTCTGCTAGCTCAACT  550

seq1  GTGAGAAAATGAATTC  566
      ||||||||||||||||
seq2  GTGAGAAAATGAATTC  566

seq1: chr10_18694078_18695159
seq2: B6Ng01-133O08.g_70_1142

seq1  GAATTCCCCTGGACCAAGGCCTATGCTAAAATCCTTCGTTCTTTACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGGACCAAGGCCTATGCTAAAATCCTTCGTTCTTTACATAA  50

seq1  ATAAACACACAATACAATCTTTTGGCTAGTATCTAATCAAAACACATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACACAATACAATCTTTTGGCTAGTATCTAATCAAAACACATACA  100

seq1  GGCAAACCAGACTTAGCACATAGCCTGGAAACTCCCAGCTTCCAAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACCAGACTTAGCACATAGCCTGGAAACTCCCAGCTTCCAAACTTC  150

seq1  AAGAAGGCAGTCAGAGGCTGCAGTTAAAGCTCGTGTACAAAATCCCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCAGTCAGAGGCTGCAGTTAAAGCTCGTGTACAAAATCCCCTGA  200

seq1  TCCCCACAAATGACAAACAGCGGGGCCTTTGCTTTCTCCAGACCCTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAAATGACAAACAGCGGGGCCTTTGCTTTCTCCAGACCCTTTTA  250

seq1  CGGTTCCATGGCTAACTCTGGAATTAGTGAGGGAAACTGTTTAATCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCCATGGCTAACTCTGGAATTAGTGAGGGAAACTGTTTAATCTGAA  300

seq1  GGTTTTTTTTTTCTTGGAAAGATGATGCCACAAAGTAGTGAAAAAGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTCTTGGAAAGATGATGCCACAAAGTAGTGAAAAAGCCCT  350

seq1  AGACAATCATTCAGACAAAACAAAACAAAAACTAGGCAACAAATGATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCATTCAGACAAAACAAAACAAAAACTAGGCAACAAATGATCTT  400

seq1  TTTGGCATAGGGATTTGCTATTCTTGGCTTCTGTGCTCCTTTCAAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATAGGGATTTGCTATTCTTGGCTTCTGTGCTCCTTTCAAAATGG  450

seq1  ACATGCAAAGTCATATGGTTTTGGTTTATTTGAAGCATTGGGATGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAAGTCATATGGTTTTGGTTTATTTGAAGCATTGGGATGCAGAA  500

seq1  ACGATCCCCCTTTCAGTTTTCTCTAAAAATGTTTTTATTACACTTACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATCCCCCTTTCAGTTTTCTCTAAAAATGTTTTTATTACACTTACTCA  550

seq1  TTGGGTGTTTTGAGGGATCATAAGGCTGTGGGCATGTCTTTGTTAAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTTTTGAGGGATCATAAGGCTGTGGGCATGTCTTTGTTAAGGTC  600

seq1  TTACAGCTGTGAACAGACACCATGACCAAGACAAGTCTTATAAGTACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTGTGAACAGACACCATGACCAAGACAAGTCTTATAAGTACAAC  650

seq1  GTTTAATTGGGTCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTGGGTCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCA  700

seq1  ATGTGGGAGCATGGCAGCCTCCAGGCAGGCATAGTGCAGGAGGAGCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGCATGGCAGCCTCCAGGCAGGCATAGTGCAGGAGGAGCTGAT  750

seq1  AGTTCTACATCTTGTTCCGAAGGCAAACAGGAGAAGACTGGCTTCCAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACATCTTGTTCCGAAGGCAAACAGGAGAAGACTGGCTTCCAGGG  800

seq1  CTTCCAGGGAGCTAGGAAGAGGATCTTAAAGCCCATGCCCACAATGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGGAGCTAGGAAGAGGATCTTAAAGCCCATGCCCACAATGACAC  850

seq1  ACTTTCACCAACAAGGCCTCACCTTCTAGTGACACTCACTGGACCAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACCAACAAGGCCTCACCTTCTAGTGACACTCACTGGACCAAGCA  900

seq1  TATTTAAACCATCACACAGGGGTAGAGGTCAGACAGGAACACGATCAAAC  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATTTAAACCATCACACAGGGGTAAAGGTCAGACAGGAACACGATCAAAC  950

seq1  TCGGGTGATCAGGCATGGCAGCAAGTACCTTTACTCACTGAACAAGCTTA  1000
      ||||||||||| |||||||||||||||||||||||||||||   ||||||
seq2  TCGGGTGATCA-GCATGGCAGCAAGTACCTTTACTCACTGA--CAGCTTA  997

seq1  CGGTCACTCAGCTTTCACTGAACCAAATTATTGTATAACCATAGCTTATT  1050
      |||||||||||||||||||||||  || |||||||| |||||||||||||
seq2  CGGTCACTCAGCTTTCACTGAAC--AAATATTGTAT-ACCATAGCTTATT  1044

seq1  GTGACCCCAAGGCCCAAACCATGAAATGAAAA  1082
      ||||  ||||||||||||||||| ||||||||
seq2  GTGA--CCAAGGCCCAAACCATG-AATGAAAA  1073