BAC Information

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BAC

Clone NameB6Ng01-133O09
Chromosome10 (Build37)
Map Location 12,449,944 - 12,611,472
singlet/doubletdoublet
Overlap geneUtrn, LOC665172
Upstream genenone
Downstream geneStx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133O09.bB6Ng01-133O09.g
ACCDH934331DH934332
length1,148937
definitionDH934331|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O09, 5' end.DH934332|Mus musculus domesticus DNA, BAC clone: B6Ng01-133O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,610,307 - 12,611,472)(12,449,944 - 12,450,884)
sequence
gaattcatatcctttcccatatgcaaagatgaagacaagcaatagaggaa
gacataaagcattgcccattaaaaagtatattagaaaccaacagaattat
ctaccacaggctaggtgtgtagacccgttggcagggtcctggcctcaaat
gcaagagtttttatttttaaaaatatatatgtattcaaactatggttggg
aatacatgcgtgcaatctcagtaccggagaggtagaacaggaaagtcaaa
agttcaaggtcaccctcagccacgcatttgacttgtcccaaaaacaacag
cagcagcagcaggagtaacaacaacaacaacaacaacaaattatctttag
aacttcaaaagacaaccacttagggggaaaaaaacaagccacaggatgga
gagaaatatttgaaaagcgtgcacctagcaaacagctaaagcttctgtat
aagagagaatttcaaatagagtgaaaggcggtgtagttttagaaatgggc
aaaaggatgtgaagatgggcaatctcatcacttcttaggaaaacagaaat
gaaaaccataatggggcacttcttgataaccactatcacgatggtgatga
tgatggtgaagatgctggtaataatgataatgtcagacagtggagcctga
gagaaggctcagaggttaagagcaatggctgcttttcctgaggaccaagg
tttgattcccaacactacatggtcaatcacaatagtttataactccaggt
cccagggacccaatagcctcttctggcctctgtgggcactgcatgcatgt
gatgcataaagacacctacaggcaaaatatccatacacataaaataaaat
gacttaaaaaaaaaagtcagacaacagtaaacatggacaatggtgtgaag
attctataatgactccacttaaatgaaatgccagaaagcagcagtctgtg
tagacagaaagtggatcagtggttgcctggagctgagcaggagacagagc
atgagatcaatttgtattgatagaaattgtcctaatactggattgtgaat
gttttcacggctctgtatattagtaacagccactagctgaaacttaatga
tgatcctgatgcttgaaatactcatcccctctaaaattactcacccca
gaattctttctcagttgtctcattaatcaacgtattttcaagctactcct
tacctctatagtctaccaccaccaccaccaccccaaaaaaagtgaaaatt
agaaaaataaaagacaaatgcagatcctatctcctcgcctagtaaagtta
agatatgcgtataaatgaccagggagcaaaacagaaggtgcagacatacc
cttctctctcaagagagagagagagagagagagagagggagagagagaga
gagagagtgggagagagataaaatgtcctagcaatagacaataatgaata
gacggcctatttaaaactacaagtgacaggctagagagatggctcagtgg
ttaagagcactgactgctcttctagaggtcctgagttcaattcccatcaa
ccacatggtggctcacaaccatctgtaatgggatccgatgcactcttctt
gtgtgtctgacgacagcaacagtaaagtcacatacatgaaataaataaaa
cttcaagtgatacagttggtcaaaaatcccttgttttctaaacatttttt
taatcctaaagttatttccaaactttaatagagttttctatttgctgtga
taaaacaccatggccaaaaggagctttaggaggaaaggctccgtctctaa
gggacacagggcaggaattacagcagagaggaaggaatgccgccatctgc
ctcagtcatccaggctcatgctgcctgcttcctgctacaacgcaagacca
cctgccccaggggcagcaaccccaaagtgggggaggctctcccacatcaa
tcattaagaaatgcccgcacagactgcctacaggctaacctgatgaagac
attgtctcaattgtggttctcttctctaataacactctacagtgtgtcag
gctgacaggatacaagaagcatagcaaactggaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12610307_12611472
seq2: B6Ng01-133O09.b_51_1198 (reverse)

seq1  TGGGGTGAGTAATATTTAAGAAGTGGATGAGTAATTTACAGACCATCAGA  50
      ||||||||||||| ||||   || ||||||||| || |   | |||||| 
seq2  TGGGGTGAGTAAT-TTTA--GAGGGGATGAGTATTTCA---AGCATCAGG  44

seq1  TTCATCCATTTAAAGTATTCAGCTTAGTGGCTGTTACTAAATATACAGAG  100
       |||| ||||  |||| |||||| |||||||||||||| |||||||||||
seq2  ATCAT-CATT--AAGT-TTCAGC-TAGTGGCTGTTACT-AATATACAGAG  88

seq1  CCGTGAAAACATTTCCACAATCCAGTATTAGGAC-ATTTCTATCAATACA  149
      |||||||||||||  ||||||||||||||||||| |||||||||||||||
seq2  CCGTGAAAACATT--CACAATCCAGTATTAGGACAATTTCTATCAATACA  136

seq1  AATTGATCCTTCATGCTCTGTCCTCCTGCCTCCAGCTCCAGGCAACCACT  199
      ||||||||  ||||||||||| |||||||   ||||||||||||||||||
seq2  AATTGATC--TCATGCTCTGT-CTCCTGC--TCAGCTCCAGGCAACCACT  181

seq1  GATCCACTTTCTGTCTACACAGACTGCCTGCTTTCTGGCATTTCATTTAA  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATCCACTTTCTGTCTACACAGACTG-CTGCTTTCTGGCATTTCATTTAA  230

seq1  GTGGAGTCA-TATAGAATCTTCACACCATTGTCCATGTTTACTGTTGTCT  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTCATTATAGAATCTTCACACCATTGTCCATGTTTACTGTTGTCT  280

seq1  GACTTTTTTTTTTAAGTCATTTTATTTTATGTGTATGGATATTTTGCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTTTTTTAAGTCATTTTATTTTATGTGTATGGATATTTTGCCTG  330

seq1  TAGGTGTCTTTATGCATCACATGCATGCAGTGCCCACAGAGGCCAGAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTCTTTATGCATCACATGCATGCAGTGCCCACAGAGGCCAGAAGA  380

seq1  GGCTATTGGGTCCCTGGGACCTGGAGTTATAAACTATTGTGATTGACCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTGGGTCCCTGGGACCTGGAGTTATAAACTATTGTGATTGACCAT  430

seq1  GTAGTGTTGGGAATCAAACCTTGGTCCTCAGGAAAAGCAGCCATTGCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTGGGAATCAAACCTTGGTCCTCAGGAAAAGCAGCCATTGCTCT  480

seq1  TAACCTCTGAGCCTTCTCTCAGGCTCCACTGTCTGACATTATCATTATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTGAGCCTTCTCTCAGGCTCCACTGTCTGACATTATCATTATTA  530

seq1  CCAGCATCTTCACCATCATCATCACCATCGTGATAGTGGTTATCAAGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTTCACCATCATCATCACCATCGTGATAGTGGTTATCAAGAAG  580

seq1  TGCCCCATTATGGTTTTCATTTCTGTTTTCCTAAGAAGTGATGAGATTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCATTATGGTTTTCATTTCTGTTTTCCTAAGAAGTGATGAGATTGC  630

seq1  CCATCTTCACATCCTTTTGCCCATTTCTAAAACTACACCGCCTTTCACTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCACATCCTTTTGCCCATTTCTAAAACTACACCGCCTTTCACTC  680

seq1  TATTTGAAATTCTCTCTTATACAGAAGCTTTAGCTGTTTGCTAGGTGCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAATTCTCTCTTATACAGAAGCTTTAGCTGTTTGCTAGGTGCAC  730

seq1  GCTTTTCAAATATTTCTCTCCATCCTGTGGCTTGTTTTTTTCCCCCTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAAATATTTCTCTCCATCCTGTGGCTTGTTTTTTTCCCCCTAAG  780

seq1  TGGTTGTCTTTTGAAGTTCTAAAGATAATTTGTTGTTGTTGTTGTTGTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCTTTTGAAGTTCTAAAGATAATTTGTTGTTGTTGTTGTTGTTG  830

seq1  TTACTCCTGCTGCTGCTGCTGTTGTTTTTGGGACAAGTCAAATGCGTGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTGCTGCTGCTGCTGTTGTTTTTGGGACAAGTCAAATGCGTGGC  880

seq1  TGAGGGTGACCTTGAACTTTTGACTTTCCTGTTCTACCTCTCCGGTACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGACCTTGAACTTTTGACTTTCCTGTTCTACCTCTCCGGTACTG  930

seq1  AGATTGCACGCATGTATTCCCAACCATAGTTTGAATACATATATATTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCACGCATGTATTCCCAACCATAGTTTGAATACATATATATTTTT  980

seq1  AAAAATAAAAACTCTTGCATTTGAGGCCAGGACCCTGCCAACGGGTCTAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAAACTCTTGCATTTGAGGCCAGGACCCTGCCAACGGGTCTAC  1030

seq1  ACACCTAGCCTGTGGTAGATAATTCTGTTGGTTTCTAATATACTTTTTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAGCCTGTGGTAGATAATTCTGTTGGTTTCTAATATACTTTTTAA  1080

seq1  TGGGCAATGCTTTATGTCTTCCTCTATTGCTTGTCTTCATCTTTGCATAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATGCTTTATGTCTTCCTCTATTGCTTGTCTTCATCTTTGCATAT  1130

seq1  GGGAAAGGATATGAATTC  1166
      ||||||||||||||||||
seq2  GGGAAAGGATATGAATTC  1148

seq1: chr10_12449944_12450884
seq2: B6Ng01-133O09.g_69_1005

seq1  GAATTCTTTCTCAGTTGTCTCATTAATCAACGTATTTTCAAGCTACTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCAGTTGTCTCATTAATCAACGTATTTTCAAGCTACTCCT  50

seq1  TACCTCTATAGTCTACCACCACCACCACCACCCCAAAAAAAGTGAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTATAGTCTACCACCACCACCACCACCCCAAAAAAAGTGAAAATT  100

seq1  AGAAAAATAAAAGACAAATGCAGATCCTATCTCCTCGCCTAGTAAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAAAGACAAATGCAGATCCTATCTCCTCGCCTAGTAAAGTTA  150

seq1  AGATATGCGTATAAATGACCAGGGAGCAAAACAGAAGGTGCAGACATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCGTATAAATGACCAGGGAGCAAAACAGAAGGTGCAGACATACC  200

seq1  CTTCTCTCTCAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTCAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGA  250

seq1  GAGAGAGTGGGAGAGAGATAAAATGTCCTAGCAATAGACAATAATGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTGGGAGAGAGATAAAATGTCCTAGCAATAGACAATAATGAATA  300

seq1  GACGGCCTATTTAAAACTACAAGTGACAGGCTAGAGAGATGGCTCAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCCTATTTAAAACTACAAGTGACAGGCTAGAGAGATGGCTCAGTGG  350

seq1  TTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCATCAA  400

seq1  CCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCACTCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCACTCTTCTT  450

seq1  GTGTGTCTGACGACAGCAACAGTAAAGTCACATACATGAAATAAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGACGACAGCAACAGTAAAGTCACATACATGAAATAAATAAAA  500

seq1  CTTCAAGTGATACAGTTGGTCAAAAATCCCTTGTTTTCTAAACATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGATACAGTTGGTCAAAAATCCCTTGTTTTCTAAACATTTTTT  550

seq1  TAATCCTAAAGTTATTTCCAAACTTTAATAGAG-TTTCTA-TTGCTGTGA  598
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TAATCCTAAAGTTATTTCCAAACTTTAATAGAGTTTTCTATTTGCTGTGA  600

seq1  TAAAACACCATGGCCAAAAGGAGC-TTAGGAGGAAAGGCTCCGTCTCTAA  647
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAAACACCATGGCCAAAAGGAGCTTTAGGAGGAAAGGCTCCGTCTCTAA  650

seq1  GGGACACAGGGCAGGAATTACAGCAGAGAGGAAGGAATGCCGCCAGCTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGACACAGGGCAGGAATTACAGCAGAGAGGAAGGAATGCCGCCATCTGC  700

seq1  CTCAGTCATCCAGGCTCATGCTGCCTGCTTCCTGCTACAACGCAGGACCA  747
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCAGTCATCCAGGCTCATGCTGCCTGCTTCCTGCTACAACGCAAGACCA  750

seq1  CCTGCCCCAGGGGCAGCAACCCCAAAGTGGGGGAGGCCCTCCCACATCAA  797
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGCCCCAGGGGCAGCAACCCCAAAGTGGGGGAGGCTCTCCCACATCAA  800

seq1  TCATTAAAGAAAATGCCCGCACAGACTTGCCTACAGGCTAACCTGATGAA  847
      |||||||   |||||||||||||||| |||||||||||||||||||||||
seq2  TCATTAA--GAAATGCCCGCACAGAC-TGCCTACAGGCTAACCTGATGAA  847

seq1  GACATTGTCTCAATTGTGGTTCCTCTTCTCTAATAACACACTACAGTGTG  897
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  GACATTGTCTCAATTGTGGTT-CTCTTCTCTAATAACACTCTACAGTGTG  896

seq1  TCAAGCTGACAAGAAACAAAGAAGCAATAAGCAAACTGGAAAGG  941
      ||| ||||||| || || ||||||||   ||||||||||||| |
seq2  TCAGGCTGACAGGATAC-AAGAAGCA--TAGCAAACTGGAAATG  937