BAC Information

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BAC

Clone NameB6Ng01-134A13
Chromosome10 (Build37)
Map Location 8,387,873 - 8,519,129
singlet/doubletdoublet
Overlap geneSash1, LOC100039173
Upstream geneNup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
Downstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134A13.bB6Ng01-134A13.g
ACCDH934433DH934434
length2881,136
definitionDH934433|Mus musculus domesticus DNA, BAC clone: B6Ng01-134A13, 5' end.DH934434|Mus musculus domesticus DNA, BAC clone: B6Ng01-134A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,387,873 - 8,388,722)(8,517,973 - 8,519,129)
sequence
agacttgggtctgaaatctagtcttccttccatggagtttctcatctcag
ctacaggacatagaaatgacgtgagcagtgttgtgatctgaataagaaga
gccacataggctcatatatttgaatttttaattatcagggagtggtagta
tttgagaaggattaagaggtgtgaccttgttggaagaagtatgttacaaa
gcccatggcaggcccagtctgccccaccctatctctctctctctctctct
ctctctctctctctctctctctctctctatatatatat
gaattccaagactggttgagctggaattccttcctctctgctacaccatc
aagtgtgattcccttccttatggtaactgatgactacttaggtatgcatc
ctgtgtttcagacacagtagagaaggagagcaaaggaagagggtgtatat
attgagatagttcttttaatcacacaaatgctaactttcttaaaactacc
agaaaattctagcgtttctttccttcgtgaggggatacttgatctccctt
agctgcaagggagtccaagaaaatgtttcacagagtacgctgcccaccca
gcccaaatcatgactctatctagcaggaagaaagaaaatgagaaaagtta
ttgagttagaaggcaagttaatttattaccttagagcaagttaatgaaat
ctacttgattaattgtggactcatggaagctgtgtactggactgtgatgt
agttccctcatcaagtaacacagaacttcattatctctaccaagcaaaca
acaagccatcattgacatcatttttatatgaaaataatcggtcatgattc
ctttctatatgatcttacttaaaatattatgggccatccagtgtgtcata
aagatgttctgaagattgattgcttcatttggaggaactggaaaggcatt
tatcatagatactgggttgcattctgttactatcaatgattattaccagc
aaagctagcatccatgtatccctttttatagtcacttctttcttagttct
gaaccattgagtcacaaatgaagaaaaataggagagctggagatgtagct
catcacttggtagagtgcttgcctacagagcatgcataaggcccttggta
cctcctcgagcaatgtattaagccctatgtgatggtgcatgcctgctatt
ctagcattcagacgtgaagacagagggattggaagttcagatcacccttg
gctaaacagtaagtttgagcagccttgctacattcgatctgtccagacag
ggaaacagagatacaagagaggggaagagacgagaaaataaggaaaatat
gccatatggaaaggtaagcctcatgagaagccctggattgaggaaacaca
tgccgataaggaattaaacaaactgtctggaatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_8387873_8388722
seq2: B6Ng01-134A13.b_47_335

seq1  GAATTCAGACTTGGGTCTGAAATCTAGTCTTCCTTCCATGGAGTTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTTGGGTCTGAAATCTAGTCTTCCTTCCATGGAGTTTCTCA  50

seq1  TCTCAGCTACAGGACATAGAAATGACGTGAGCAGTGTTGTGATCTGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTACAGGACATAGAAATGACGTGAGCAGTGTTGTGATCTGAATA  100

seq1  AGAAGAGCCACATAGGCTCATATATTTGAATTTTTAATTATCAGGGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCCACATAGGCTCATATATTTGAATTTTTAATTATCAGGGAGTG  150

seq1  GTAGTATTTGAGAAGGATTAAGAGGTGTGACCTTGTTGGAAGAAGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATTTGAGAAGGATTAAGAGGTGTGACCTTGTTGGAAGAAGTATGT  200

seq1  TACAAAGCCCATGGCAGGCCCAGTCTGCCCCACCCTATCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCCCATGGCAGGCCCAGTCTGCCCCACCCTATCTCTCTCTCTCT  250

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATCAGAATGT  300
      |||||||||||||||||||||||||||||||||| | |            
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATA-----------  289

seq1  AGCTCTCAACTCCTTCTCCAGCACCAAGCCTGCCATGCCTCCCATCATGA  350
                                                        
seq2  --------------------------------------------------  289

seq1  TGATAATGTACTAAGCCTCTGAAACTGTAAGGAAATGCCTTGGGCATGGT  400
                                                        
seq2  --------------------------------------------------  289

seq1  GTCTCTTTACAGCAAGCAGATAGTAATTAAGACATGTGGCCGTTTCTCAG  450
                                                        
seq2  --------------------------------------------------  289

seq1  TTTTTCAGGAATGGCTCGTCCTAGAAACTTAGACAGGAAACTAATCCACT  500
                                                        
seq2  --------------------------------------------------  289

seq1  GTTTACTACATTAGTCCTGCTTCTCCCAAAGGACAGAAAAGATAAAATCT  550
                                                        
seq2  --------------------------------------------------  289

seq1  ATAAGGGATTCATTAGATTGACTTTTATTACATGGTCCTGGCAGTCCAAC  600
                                                        
seq2  --------------------------------------------------  289

seq1  AATGGCTGCCTCACAATGGAGAAGACAAGAATCTGATAGTTATTAGCATA  650
                                                        
seq2  --------------------------------------------------  289

seq1  TCATATGAAGTATATTCAATAAGTATATTCAGATGAATTTAATGATATTA  700
                                                        
seq2  --------------------------------------------------  289

seq1  ATAGTTAGAGTTAATAATTCTGTGAGGTGGGTTACTCATGGAGAGATGCT  750
                                                        
seq2  --------------------------------------------------  289

seq1  GGTCTTCTGTCTAAGTTCAAGCCTAAAGAAATTGGTTCTAACATCAAAAT  800
                                                        
seq2  --------------------------------------------------  289

seq1  GATCATCCATCATGACCAAGTAGGCTTCATCCCAGGGATGGTTTAATATA  850
                                                        
seq2  --------------------------------------------------  289

seq1: chr10_8517973_8519129
seq2: B6Ng01-134A13.g_68_1203 (reverse)

seq1  CAAATCCAGGACAGGTTTGTTTATATCCTTATCGGCATGTTGTCCCTCAA  50
      ||||| |  |||| |||||||||  |||||||||||||||  | ||||||
seq2  CAAATTCCAGACA-GTTTGTTTAATTCCTTATCGGCATGTGTTTCCTCAA  49

seq1  TTCCCAGGGGCCTCTCACTGAGGCTTACTTTTCCATATGGGCCATATTTT  100
      |  ||| |||| ||||| |||||||||| |||||||||||  ||||||||
seq2  T--CCA-GGGCTTCTCA-TGAGGCTTACCTTTCCATATGG--CATATTTT  93

seq1  TCCCTTATTTTCTTCTGTCTCTTCCCCCTTCCTCTTTGTATCTCTGTTTC  150
        |||||||||||   |||||||||||  ||    |||||||||||||||
seq2  --CCTTATTTTCT--CGTCTCTTCCCCTCTC----TTGTATCTCTGTTTC  135

seq1  CCTGTCTTGGACAGATTCGAATGTAGGCAAGGCTGCCTCAAACTTACTGT  200
      |||||| |||||||| ||||||||| ||||||||| ||||||||||||||
seq2  CCTGTC-TGGACAGA-TCGAATGTA-GCAAGGCTG-CTCAAACTTACTGT  181

seq1  TTAGCCAAGGGTGATCTTGAACTTCCAATCCCTCTGTCTTCACCTTCTGA  250
      |||||||||||||||| ||||||||||||||||||||||||| | |||||
seq2  TTAGCCAAGGGTGATC-TGAACTTCCAATCCCTCTGTCTTCA-CGTCTGA  229

seq1  ATGCTAGAATAGCAGGCATGCACCATCACATAGGGCTTAATACATTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGAATAGCAGGCATGCACCATCACATAGGGCTTAATACATTGCTC  279

seq1  GAGGAGGTACCAAGGGCCTTATGCATGCTCTGTAGGCAAGCACTCTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTACCAAGGGCCTTATGCATGCTCTGTAGGCAAGCACTCTACCA  329

seq1  AGTGATGAGCTACATCTCCAGCTCTCCTATTTTTCTTCATTTGTGACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAGCTACATCTCCAGCTCTCCTATTTTTCTTCATTTGTGACTCA  379

seq1  ATGGTTCAGAACTAAGAAAGAAGTGACTATAAAAAGGGATACATGGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAGAACTAAGAAAGAAGTGACTATAAAAAGGGATACATGGATGC  429

seq1  TAGCTTTGCTGGTAATAATCATTGATAGTAACAGAATGCAACCCAGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGCTGGTAATAATCATTGATAGTAACAGAATGCAACCCAGTATC  479

seq1  TATGATAAATGCCTTTCCAGTTCCTCCAAATGAAGCAATCAATCTTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAAATGCCTTTCCAGTTCCTCCAAATGAAGCAATCAATCTTCAGA  529

seq1  ACATCTTTATGACACACTGGATGGCCCATAATATTTTAAGTAAGATCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTATGACACACTGGATGGCCCATAATATTTTAAGTAAGATCATA  579

seq1  TAGAAAGGAATCATGACCGATTATTTTCATATAAAAATGATGTCAATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGAATCATGACCGATTATTTTCATATAAAAATGATGTCAATGAT  629

seq1  GGCTTGTTGTTTGCTTGGTAGAGATAATGAAGTTCTGTGTTACTTGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTGTTTGCTTGGTAGAGATAATGAAGTTCTGTGTTACTTGATGA  679

seq1  GGGAACTACATCACAGTCCAGTACACAGCTTCCATGAGTCCACAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTACATCACAGTCCAGTACACAGCTTCCATGAGTCCACAATTAAT  729

seq1  CAAGTAGATTTCATTAACTTGCTCTAAGGTAATAAATTAACTTGCCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGATTTCATTAACTTGCTCTAAGGTAATAAATTAACTTGCCTTCT  779

seq1  AACTCAATAACTTTTCTCATTTTCTTTCTTCCTGCTAGATAGAGTCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATAACTTTTCTCATTTTCTTTCTTCCTGCTAGATAGAGTCATGA  829

seq1  TTTGGGCTGGGTGGGCAGCGTACTCTGTGAAACATTTTCTTGGACTCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTGGGTGGGCAGCGTACTCTGTGAAACATTTTCTTGGACTCCCT  879

seq1  TGCAGCTAAGGGAGATCAAGTATCCCCTCACGAAGGAAAGAAACGCTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAAGGGAGATCAAGTATCCCCTCACGAAGGAAAGAAACGCTAGA  929

seq1  ATTTTCTGGTAGTTTTAAGAAAGTTAGCATTTGTGTGATTAAAAGAACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGGTAGTTTTAAGAAAGTTAGCATTTGTGTGATTAAAAGAACTA  979

seq1  TCTCAATATATACACCCTCTTCCTTTGCTCTCCTTCTCTACTGTGTCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATATATACACCCTCTTCCTTTGCTCTCCTTCTCTACTGTGTCTGA  1029

seq1  AACACAGGATGCATACCTAAGTAGTCATCAGTTACCATAAGGAAGGGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGATGCATACCTAAGTAGTCATCAGTTACCATAAGGAAGGGAAT  1079

seq1  CACACTTGATGGTGTAGCAGAGAGGAAGGAATTCCAGCTCAACCAGTCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGATGGTGTAGCAGAGAGGAAGGAATTCCAGCTCAACCAGTCTT  1129

seq1  GGAATTC  1157
      |||||||
seq2  GGAATTC  1136