BAC Information

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BAC

Clone NameB6Ng01-134K11
Chromosome5 (Build37)10 (Build37)
Map Location 15,306,287 - 15,307,354104,053,460 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134K11.bB6Ng01-134K11.g
ACCDH934896DH934897
length1,068977
definitionDH934896|Mus musculus domesticus DNA, BAC clone: B6Ng01-134K11, 5' end.DH934897|Mus musculus domesticus DNA, BAC clone: B6Ng01-134K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,306,287 - 15,307,354)(104,053,460 - 104,054,363)
sequence
gaattcttcttgaacttaacactactgggatttctacattcaacaacctt
ttgtgactgtttacccccagagctgtcaagattatatcctaatgtgaagg
gagaaaattgtctcttaaaataatttcagctaaaaatatacatactgaaa
gacagccacccaagttctccctgtgcctattcgtctgggatgaatatgct
tccccccctgacattttagcagaacaagggctgagatcttctctgttaaa
ctgacagttgctcaactgagggagggaaaaggggaaaggggtagctgaag
tcttgattgacatcttttaagcagacagtgcccctctagtgagcttaacc
tctcaaaagaagatatctcctatagccagtccttttctcatatctgtgtg
cataacacctactgtgacaggcagtttcctacttttaatccatgatgctt
gactttgaaggtgatagaacatttctatttctcaatacaaacagctttta
aaagtcttctagccagcatggaatttaagaggaatagagagacagatttc
tatagaagtctctttaaattgaagatctcttatattcaataaaaaaagaa
tcagacccattctcttggaatttatccatattcatttagtctactcactt
attcattcttagaattatacacattctatacatcaatcattatgattgac
gtaagtagaaaaatgagaaaaatgtgtcaggaagaacattctagaggttt
cattgcttttgtgcatgcctgagacaaagacagaaaattagtcagcagta
gaaccaatttgttattggaagtcgaaatttgctattaggaggaaagtgtc
aaacgtgtgtataattaactaagagttcagagatacaaaacgggtcagac
tcgaaaatgtggggaagaaaggactcagattcacagagaaggaaagtgaa
taggactggggatcttgagttggcagcatattggctgctgttctgatgag
catgattagataagtggttactttgctacctaaataaacacaggaagaac
aggtcccgggggggagga
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatatctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgccccttcttagatttgggtg
gactttcatgaatggaagtaagatgagttgagtcaacaaagacctactga
agtctcctacaggcagatctttgtggacccgctgatgattgaagtctcat
tctgtttgtaggactgcctgggattgtttctaagaacaccaagaatggcg
ctgctttcttaaattttgaaatgttgctttgtaactaaaaactcatatct
ttgatttaaaaaaaaaaaagaggttatcagtggcaaagtgtgactttaaa
aatagattcactctctgagctctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15306287_15307354
seq2: B6Ng01-134K11.b_45_1112

seq1  GAATTCTTCTTGAACTTAACACTACTGGGATTTCTACATTCAACAACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGAACTTAACACTACTGGGATTTCTACATTCAACAACCTT  50

seq1  TTGTGACTGTTTACCCCCAGAGCTGTCAAGATTATATCCTAATGTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACTGTTTACCCCCAGAGCTGTCAAGATTATATCCTAATGTGAAGG  100

seq1  GAGAAAATTGTCTCTTAAAATAATTTCAGCTAAAAATATACATACTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATTGTCTCTTAAAATAATTTCAGCTAAAAATATACATACTGAAA  150

seq1  GACAGCCACCCAAGTTCTCCCTGTGCCTATTCGTCTGGGATGAATATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCACCCAAGTTCTCCCTGTGCCTATTCGTCTGGGATGAATATGCT  200

seq1  TCCCCCCCTGACATTTTAGCAGAACAAGGGCTGAGATCTTCTCTGTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCTGACATTTTAGCAGAACAAGGGCTGAGATCTTCTCTGTTAAA  250

seq1  CTGACAGTTGCTCAACTGAGGGAGGGAAAAGGGGAAAGGGGTAGCTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTTGCTCAACTGAGGGAGGGAAAAGGGGAAAGGGGTAGCTGAAG  300

seq1  TCTTGATTGACATCTTTTAAGCAGACAGTGCCCCTCTAGTGAGCTTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTGACATCTTTTAAGCAGACAGTGCCCCTCTAGTGAGCTTAACC  350

seq1  TCTCAAAAGAAGATATCTCCTATAGCCAGTCCTTTTCTCATATCTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAGAAGATATCTCCTATAGCCAGTCCTTTTCTCATATCTGTGTG  400

seq1  CATAACACCTACTGTGACAGGCAGTTTCCTACTTTTAATCCATGATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACACCTACTGTGACAGGCAGTTTCCTACTTTTAATCCATGATGCTT  450

seq1  GACTTTGAAGGTGATAGAACATTTCTATTTCTCAATACAAACAGCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAAGGTGATAGAACATTTCTATTTCTCAATACAAACAGCTTTTA  500

seq1  AAAGTCTTCTAGCCAGCATGGAATTTAAGAGGAATAGAGAGACAGATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCTAGCCAGCATGGAATTTAAGAGGAATAGAGAGACAGATTTC  550

seq1  TATAGAAGTCTCTTTAAATTGAAGATCTCTTATATTCAATAAAAAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAGTCTCTTTAAATTGAAGATCTCTTATATTCAATAAAAAAAGAA  600

seq1  TCAGACCCATTCTCTTGGAATTTATCCATATTCATTTAGTCTACTCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCCATTCTCTTGGAATTTATCCATATTCATTTAGTCTACTCACTT  650

seq1  ATTCATTCTTAGAATTATACACATTCTATACATCAATCATTATGATTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCTTAGAATTATACACATTCTATACATCAATCATTATGATTGAC  700

seq1  GTAAGTAGAAAAATGAGAAAAATGTGTCAGGAAGAACATTCTAGAGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAGAAAAATGAGAAAAATGTGTCAGGAAGAACATTCTAGAGGTTT  750

seq1  CATTGCTTTTGTGCATGCCTGAGACAAAGACAGAAAATTAGTCAGCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTTGTGCATGCCTGAGACAAAGACAGAAAATTAGTCAGCAGTA  800

seq1  GAACCAATTTGTTATTGGAAGTCGAAATTTGCTATTAGGAGGAAAGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAATTTGTTATTGGAAGTCGAAATTTGCTATTAGGAGGAAAGTGTC  850

seq1  AAACGTGTGTATAATTAACTAAGAGTTCAGAGATACAAAACGGGTCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGTGTATAATTAACTAAGAGTTCAGAGATACAAAACGGGTCAGAC  900

seq1  TCGAAAATGT-GGGAAGAAAGGACTCAGATTCAACAGAGAAGGAAAGTGA  949
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TCGAAAATGTGGGGAAGAAAGGACTCAGATTC-ACAGAGAAGGAAAGTGA  949

seq1  ATAGGACTGGGGATCTTGAGTTGGCAGCATA-TGGCTGCTGTTCTGATGA  998
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAGGACTGGGGATCTTGAGTTGGCAGCATATTGGCTGCTGTTCTGATGA  999

seq1  GCAATGATCTAGATAAGGTGTTAC-TTGCTACCTAAATAAACACAGGAAG  1047
      || ||||| ||||||||  ||||| |||||||||||||||||||||||||
seq2  GC-ATGAT-TAGATAAGTGGTTACTTTGCTACCTAAATAAACACAGGAAG  1047

seq1  AACAGGTCCGGGGGGAGAGGA  1068
      ||||||||| ||||| |||||
seq2  AACAGGTCCCGGGGGGGAGGA  1068

seq1: chr10_104053460_104054363
seq2: B6Ng01-134K11.g_67_758 (reverse)

seq1  TCTAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTCGTTCT-CTTGAGTT  49
      |||||||||||||| |||||||||||||  |||||| |||| ||||||||
seq2  TCTAAGAAGGGGCATAGTGTCCACACTTCAGTCTTCATTCTCCTTGAGTT  50

seq1  TAATGTGTTTAGCAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTG  99
      | |||||||||||||||| ||||||||||||||||||||||| ||||  |
seq2  TCATGTGTTTAGCAAATTATATCTTATATCTTGGGTATCCTAGGTTT-GG  99

seq1  GGCTAATATCCACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGA  149
      ||||||||||||||||||||||| ||||||||| | ||||| ||||||||
seq2  GGCTAATATCCACTTATCAGTGAATACATATTGTGTGAGTTTCTTTGTGA  149

seq1  TTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTA  199
       || |||||| ||||||||||||| | ||||||||||||||||||| |||
seq2  ATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTA  199

seq1  GGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTA  249
      |||||||||||||||||||||||||||||||                   
seq2  GGAATTTCATAAATTCATTCTTTTTAATAGC-------------------  230

seq1  ATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATT  299
                                                        
seq2  --------------------------------------------------  230

seq1  TAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAA  349
                                                        
seq2  --------------------------------------------------  230

seq1  TAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGT  399
                                                   | |||
seq2  ---------------------------------------------TGAGT  235

seq1  AAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAAT  449
      |                             |||                 
seq2  A-----------------------------GTA-----------------  239

seq1  AGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGA  499
        |||||||||||| |||||||||||||| |||||| |||||||||||||
seq2  --CTCCATTGTGTAGATGTACCACATTTTTTGTATCCATTCCTCTGTTGA  287

seq1  GGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTA  549
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  GGGGCATCTAGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTA  337

seq1  TGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGA  599
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAACATAGTGGAGCATGTGTCCTTCTTACCTGTTGGGGCATCTTCTGGA  387

seq1  TATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAA  649
      ||||||||||| |||| |||||||||||||||||||||||||||||||| 
seq2  TATATGCCCAGGAGAGATATTGCTGGATCCTCCGGTAGTACTATGTCCAG  437

seq1  TTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGC  699
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGC  487

seq1  AATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAG  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAG  537

seq1  CATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAG  587

seq1  GTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATG  637

seq1  TTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAG  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGAACATTTTTTCAAGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAG  687

seq1  AATTC  904
      |||||
seq2  AATTC  692