BAC Information

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BAC

Clone NameB6Ng01-134M16
Chromosome10 (Build37)
Map Location 63,389,182 - 63,465,505
singlet/doubletdoublet
Overlap geneCtnna3, Lrrtm3
Upstream geneSlc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134M16.bB6Ng01-134M16.g
ACCDH935000DH935001
length1,094987
definitionDH935000|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M16, 5' end.DH935001|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,389,182 - 63,390,286)(63,464,514 - 63,465,505)
sequence
gaattcatagtttaaaagaatcttgccaaaacataaaaaggaaaaaaatg
tctttcttcttaactctgaatcaagcatgtatcagttgactgcatggtga
gctctgtcttatggactttttacaaccactgaagtgatctcagtgtagac
cattttgagtttgtctttttgtgcctcttgttttccctctgtaccctaca
gtctgcctgtctcacatcttgagagtgaggagttcacaaatgtcctgtgt
attaaatgtgtggctttagtcctgatctatatcaccaccacaagcaaacc
tagagccttgtctgcagagactcatatattgtacagacttctacgttgaa
ttagagcttactaaatgacacgcctaataacttctgtctgccatctctgg
ggggtctctggccagagagatgggggagcttttagtgtaatggaaaacaa
cctttaggcattgaaagcagttcaaaccatcaccggccatcagctctgtg
tccttggatgagtctcgacttatgagacatgaatgtatcttcacaggatt
gtttaggacggcaagaagagataattcatgggatttgtgaaccttaaaac
actgcctggctttagctactgttgtaactgtaatgggtagactccagttt
tcaaccgcaacaggcagacaaacagctatttttcttgttttagatagttg
agcggtagccatgaaggagaacataggggtttggcagatggttggatgga
gaaatggggagaatggtaaatgctggaaaaaagaagttataaattaaaaa
aaaaaaagatacaagataaggcagactttaacgtcagctacctctcctta
tttaaagaccctctggacttaatgccaaatatgaaagatctcaagttcat
aagttgttagcttcagaataatcccagtgacagtcccaaggtgattggcc
ccactgatagtcccctgtcaatgaaatgaaaaactcaaggaacatctgat
gtggaggaaactcaggttgtctttatgagtggtggttctggtagcaccca
ctggctagcacaagtgtactcgaagtttgatctgaaaggaatga
gaattcaaagctattcaaagagttattggatacataaggagagatccagt
gaaaaatgggaattcactcatgttttaatgaaaagagtctagtgatataa
aatctataaagcttggggttttttttttgttttgtttgtttgtttgtttg
tttcatctatctccttaactcatagaggaggttagtttaggaaccctgta
aaatagaaactctttggaagaggctctcgctttctctgttgcttaataca
ggatagagttaatcctgggttgtaaggaaataaatgatgactaagcatca
tctcttatctaaatcacacacggtttcaaaggactgggcagaataggaaa
ctccccaagagcacagatgctgccttcctcttcttttataaacctcaggt
cgcttctagaaatctgctgacagaagtgtcatttgaatatggtgagaaga
aatgggatgaaggacaggtggtaagaaaacagcgggtcggggagagaaag
aaagacatagaaaagagagcggagtcttagagaaaggagtctcagaaggg
aaaggaagcgatgaagggggaggagggaggaagctagatgcatgaatcat
ccgcatcttctgattcctcctgtggaagttactgaaaaggtcctatctga
tattcaaatgacattaatgcgaaacccgtcagttccagggttattttaat
gactcattgaggaaataccaaaggcggatacttctgttaataagagtgag
tttgctctcttcgggaatattttcacagaattatcccataggtccttctg
tttgtacaggaactagaacacatccattagggtcaatgtgaaaagacccc
tggttttctttcgagccctaaaatccacactgatcatttttacccttgct
cctgaagacaggctgaaacaaatatctgttgaaaagtgagggcccctcat
gtttgtacagttcacagcagtcagttccaactgcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63389182_63390286
seq2: B6Ng01-134M16.b_47_1140

seq1  GAATTCATAGTTTAAAAGAATCTTGCCAAAACATAAAAAGGAAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTTAAAAGAATCTTGCCAAAACATAAAAAGGAAAAAAATG  50

seq1  TCTTTCTTCTTAACTCTGAATCAAGCATGTATCAGTTGACTGCATGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCTTAACTCTGAATCAAGCATGTATCAGTTGACTGCATGGTGA  100

seq1  GCTCTGTCTTATGGACTTTTTACAACCACTGAAGTGATCTCAGTGTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTTATGGACTTTTTACAACCACTGAAGTGATCTCAGTGTAGAC  150

seq1  CATTTTGAGTTTGTCTTTTTGTGCCTCTTGTTTTCCCTCTGTACCCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAGTTTGTCTTTTTGTGCCTCTTGTTTTCCCTCTGTACCCTACA  200

seq1  GTCTGCCTGTCTCACATCTTGAGAGTGAGGAGTTCACAAATGTCCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTGTCTCACATCTTGAGAGTGAGGAGTTCACAAATGTCCTGTGT  250

seq1  ATTAAATGTGTGGCTTTAGTCCTGATCTATATCACCACCACAAGCAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTGTGGCTTTAGTCCTGATCTATATCACCACCACAAGCAAACC  300

seq1  TAGAGCCTTGTCTGCAGAGACTCATATATTGTACAGACTTCTACGTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTTGTCTGCAGAGACTCATATATTGTACAGACTTCTACGTTGAA  350

seq1  TTAGAGCTTACTAAATGACACGCCTAATAACTTCTGTCTGCCATCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCTTACTAAATGACACGCCTAATAACTTCTGTCTGCCATCTCTGG  400

seq1  GGGGTCTCTGGCCAGAGAGATGGGGGAGCTTTTAGTGTAATGGAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTCTGGCCAGAGAGATGGGGGAGCTTTTAGTGTAATGGAAAACAA  450

seq1  CCTTTAGGCATTGAAAGCAGTTCAAACCATCACCGGCCATCAGCTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGCATTGAAAGCAGTTCAAACCATCACCGGCCATCAGCTCTGTG  500

seq1  TCCTTGGATGAGTCTCGACTTATGAGACATGAATGTATCTTCACAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGATGAGTCTCGACTTATGAGACATGAATGTATCTTCACAGGATT  550

seq1  GTTTAGGACGGCAAGAAGAGATAATTCATGGGATTTGTGAACCTTAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGACGGCAAGAAGAGATAATTCATGGGATTTGTGAACCTTAAAAC  600

seq1  ACTGCCTGGCTTTAGCTACTGTTGTAACTGTAATGGGTAGACTCCAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGGCTTTAGCTACTGTTGTAACTGTAATGGGTAGACTCCAGTTT  650

seq1  TCAACCGCAACAGGCAGACAAACAGCTATTTTTCTTGTTTTAGATAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCGCAACAGGCAGACAAACAGCTATTTTTCTTGTTTTAGATAGTTG  700

seq1  AGCGGTAGCCATGAAGGAGAACATAGGGGTTTGGCAGATGGTTGGATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTAGCCATGAAGGAGAACATAGGGGTTTGGCAGATGGTTGGATGGA  750

seq1  GAAATGGGGAGAATGGTAAATGCTGGAAAAAAGAAGTTATAAATTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGGAGAATGGTAAATGCTGGAAAAAAGAAGTTATAAATTAAAAA  800

seq1  AAAAAAAGATACAAGATAAGGCAGACTTTAACGTCAGCTACCTCTCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATACAAGATAAGGCAGACTTTAACGTCAGCTACCTCTCCTTA  850

seq1  TTTAAAGACCCTCTGGACTTAATGCCAAATATGAAAGATCTCAAAGTTCA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTAAAGACCCTCTGGACTTAATGCCAAATATGAAAGATCTC-AAGTTCA  899

seq1  TAAGTTGTTAGCTTCAGAATAATCCCAGTGACAGTCCCAAGGTGATTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTTAGCTTCAGAATAATCCCAGTGACAGTCCCAAGGTGATTGGC  949

seq1  CCCACTGATAGTCCCCTGTCAATGAAATGAAAAAACTCAAGGAACATCTG  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCCACTGATAGTCCCCTGTCAATGAAATG-AAAAACTCAAGGAACATCTG  998

seq1  ATGTGGAGGAAACTCAGGGTTGTCTTTATGAGTGTGGTTTCTGGTAGGTC  1050
      |||||||||||||||| |||||||||||||||||  | |||||||||  |
seq2  ATGTGGAGGAAACTCA-GGTTGTCTTTATGAGTGGTGGTTCTGGTAG--C  1045

seq1  ACCCA-TGGCTAGCACAAGTTGTACTCAGAAGTTTGGATCTGTAAAAAGG  1099
      ||||| ||||||||||||| ||||||| ||||||| ||||||   |||||
seq2  ACCCACTGGCTAGCACAAG-TGTACTC-GAAGTTT-GATCTG---AAAGG  1089

seq1  ATATGA  1105
      | ||||
seq2  A-ATGA  1094

seq1: chr10_63464514_63465505
seq2: B6Ng01-134M16.g_68_1054 (reverse)

seq1  AAGGCAGTTGGAGACCTGACTCGCTGTGAACTGTACAAACATGAAGGGCC  50
      ||||||||||  || |||||| |||||||||||||||||||||| |||||
seq2  AAGGCAGTTG--GAACTGACT-GCTGTGAACTGTACAAACATGAGGGGCC  47

seq1  CTCACCTTTGCAACAGATATTTGTTTCAGCCTGTCTTCAGGAGCAAAGGG  100
      |||| |||| |||||||||||||||||||||||||||||||||| |||||
seq2  CTCA-CTTTTCAACAGATATTTGTTTCAGCCTGTCTTCAGGAGC-AAGGG  95

seq1  TAAAAATGATCAGTGTGGATTTTAAGGCTCGAAAGAAAACCAGGGGGTCT  150
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  TAAAAATGATCAGTGTGGATTTTAGGGCTCGAAAGAAAACCA-GGGGTCT  144

seq1  TTTCACATTGACCCTAATGGATGTGTTCTAGTTCCTGTACAAACAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTGACCCTAATGGATGTGTTCTAGTTCCTGTACAAACAGAAGG  194

seq1  ACCTAT-GGATGATTCTGTGAAAATATTCCCGAAGAGAGCAAACTCACTC  249
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGGGATAATTCTGTGAAAATATTCCCGAAGAGAGCAAACTCACTC  244

seq1  TTATTAACAGAAGTATCCGCCTTTGGTATTTCCTCAATGAGTCATTAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACAGAAGTATCCGCCTTTGGTATTTCCTCAATGAGTCATTAAAA  294

seq1  TAACCCTGGAACTGACGGGTTTCGCATTAATGTCATTTGAATATCAGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGGAACTGACGGGTTTCGCATTAATGTCATTTGAATATCAGATA  344

seq1  GGACCTTTTCAGTAACTTCCACAGGAGGAATCAGAAGATGCGGATGATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTTCAGTAACTTCCACAGGAGGAATCAGAAGATGCGGATGATTC  394

seq1  ATGCATCTAGCTTCCTCCCTCCTCCCCCTTCATCGCTTCCTTTCCCTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTAGCTTCCTCCCTCCTCCCCCTTCATCGCTTCCTTTCCCTTCT  444

seq1  GAGACTCCTTTCTCTAAGACTCCGCTCTCTTTTCTATGTCTTTCTTTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCTTTCTCTAAGACTCCGCTCTCTTTTCTATGTCTTTCTTTCTC  494

seq1  TCCCCGACCCGCTGTTTTCTTACCACCTGTCCTTCATCCCATTTCTTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGACCCGCTGTTTTCTTACCACCTGTCCTTCATCCCATTTCTTCTC  544

seq1  ACCATATTCAAATGACACTTCTGTCAGCAGATTTCTAGAAGCGACCTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTCAAATGACACTTCTGTCAGCAGATTTCTAGAAGCGACCTGAG  594

seq1  GTTTATAAAAGAAGAGGAAGGCAGCATCTGTGCTCTTGGGGAGTTTCCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAAAGAAGAGGAAGGCAGCATCTGTGCTCTTGGGGAGTTTCCTA  644

seq1  TTCTGCCCAGTCCTTTGAAACCGTGTGTGATTTAGATAAGAGATGATGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCAGTCCTTTGAAACCGTGTGTGATTTAGATAAGAGATGATGCT  694

seq1  TAGTCATCATTTATTTCCTTACAACCCAGGATTAACTCTATCCTGTATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCATTTATTTCCTTACAACCCAGGATTAACTCTATCCTGTATTA  744

seq1  AGCAACAGAGAAAGCGAGAGCCTCTTCCAAAGAGTTTCTATTTTACAGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGAGAAAGCGAGAGCCTCTTCCAAAGAGTTTCTATTTTACAGGG  794

seq1  TTCCTAAACTAACCTCCTCTATGAGTTAAGGAGATAGATGAAACAAACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAACTAACCTCCTCTATGAGTTAAGGAGATAGATGAAACAAACAA  844

seq1  ACAAACAAACAAAACAAAAAAAAAACCCCAAGCTTTATAGATTTTATATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAAACAAAAAAAAAACCCCAAGCTTTATAGATTTTATATC  894

seq1  ACTAGACTCTTTTCATTAAAACATGAGTGAATTCCCATTTTTCACTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTCTTTTCATTAAAACATGAGTGAATTCCCATTTTTCACTGGAT  944

seq1  CTCTCCTTATGTATCCAATAACTCTTTGAATAGCTTTGAATTC  992
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTATGTATCCAATAACTCTTTGAATAGCTTTGAATTC  987