BAC Information

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BAC

Clone NameB6Ng01-135A08
Chromosome10 (Build37)3 (Build37)
Map Location 104,053,903 - 104,054,36393,874,889 - 93,876,018
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A08.bB6Ng01-135A08.g
ACCDH935174DH935175
length1,0111,109
definitionDH935174|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A08, 5' end.DH935175|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(93,874,889 - 93,876,018)
sequence
gaattctcacctgaggaacaccaaatggcagaggagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacagccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaatttcaggtgatag
caggcgaggatgtggagaaagaggaacactcctccattgttggtgggatt
gcaagcttgtacaaccactctggaaatcagtctggtggttcttcagaaaa
ttggacatagtactaccggaggatccagcaatacctctcctgggtatata
tccagaagatgtcccaactggtaaggacacatgctccactatgttcatag
cagccttatttataatagccagaagctggaaagaacccagatgcccctca
acagaggaatggatacagaaaacgtggtacatttacacaatggagtacta
ctcagctattaaaaaccatgaatttatgaaattcctaggcaaatggatgg
acctggagggcatcatcctgagtgaggtaacacaaccacaaaggaactca
cacaatatgtactcactgataagtggatgttagcccaaaacataggatac
ccaagatataagatacaatttgctaaacgcatgaaactcaagaagaatga
agaccaaagtgtggacactgtgccccttcttagaattgggaataaaacac
ccatggaaggagttacagagacaaagttcggagctgtgacgaaaggatgg
accatctagagactgccatatccagggatccatctcataatcagcttcca
aacgctgacaccattgtatccactagcaagattttgcagaaaggacccag
atatagctgtctcttgtgagactatgccggggcctagcaaacacagaagt
ggatgctcacagtcagctattggatggatcacagggccccaatggaggag
ctagagaaagtacccaaggagctaaagggatctgcaaccctataggtgga
acaacattatt
gaattccctgttcacagactgctgcctgttggtagctggccatgaattca
gggctcacaaggccatcctagcagctcgctctccagttttcagagccatg
tttgaacatgaaatggaggagagactaggaaaccccactgagatccatga
cctggatcccaaagtctttaaggagatgatgggcttcatttacactggga
aggcgccacacctccaaagccactccatggccactgatgtgctgacagct
gctgacaagtatggtctggagggcctgaaggtcctgtgtgaggatgccct
ctgcaggaacctctctgtggagaatgctgcacaaactctcatcctggctg
acctccacaaaagagagcagctgaagactcaggccctgtatttcattgca
cttcatgcttctgtggtctctgagacctcagagtggaagtcaatgatgga
gacccatccccacttggttggctgaagcattccacttcctgggtcctgca
cgcagtgttgagccctcactcaaacacgtaaaatgagtttaggggatgga
cagctatgaccaacatctgtcttccaatagcaataaccagtgttgttacc
actgatttctggttagagtacagtattgctggaacatttatagtgaacct
gggaaaaagcagcatggtggctcagcatgtaaaacagctgttatatgtta
aaatgctgggtgggggatgggcagcactggagtctgggacagtctccttg
acttctactctgttaatgtttctagtatgatttttgtctgatatttagga
aactgggatttatttaggtgctgtccctaaggacggacaaacctgagttt
cttcagagaaacctgtctgcattggactatgtagaaaagatggctggggc
ccagagcaaagataaatcaagcacgaatgtaactcattgggatggaaaga
catgaagacttttatttttaagattcgtttgtggactcagctgcaaagca
gtacagttcactcaagaacttctggttcagttctcagccaccagagagtt
ttcagcaccgtacttggattagaaggatctgagcctcattgggtctccat
tgctcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-135A08.b_49_511 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||||||||||||| |||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACGTTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||   |||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC---CTTACCAGT  147

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| |||||||||||||||| ||||| ||||||||||||||||||||||
seq2  TGGGACATCTTCTGGATATATACCCAGGAGAGGTATTGCTGGATCCTCCG  197

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| ||||| |||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAAGAACCACCAGACTGATTTCCAGAGT  247

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  297

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||||||      ||||| ||||||||| |||||||||||||||
seq2  TCCACATCCTCGC------CTGCTATCACCTGAAATTTTGATCTTAGCCA  341

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGCTGTTTTGATTTGCATTTCC  391

seq1  CTGATGATTAAGGATGTTGAACA-TTTTTTCAGGTGCTTCTCTGCCATTC  439
      ||||||||||||||||||||||| |||||||||||||| |||||||||| 
seq2  CTGATGATTAAGGATGTTGAACATTTTTTTCAGGTGCTCCTCTGCCATTT  441

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||| ||||||||||||||||||
seq2  GGTGTTCCTCAGGTGAGAATTC  463

seq1: chr3_93874889_93876018
seq2: B6Ng01-135A08.g_68_1176 (reverse)

seq1  GTTTGTAGCAATGGAGACCAGATGAGGGCCTCAGATCCTCTGGATCACAA  50
      ||||| |||||||||||||  ||||||  ||||||||||    ||| |||
seq2  GTTTG-AGCAATGGAGACCCAATGAGG--CTCAGATCCTTCTAATC-CAA  46

seq1  GTTAAGGGGTGGCTGAAAAACTCTCCTGTGTGCTGAGAACTGAACCAG-A  99
      ||  | ||   |||| |||||||||  ||| ||||||||||||||||| |
seq2  GT--ACGG--TGCTG-AAAACTCTCTGGTG-GCTGAGAACTGAACCAGAA  90

seq1  GTTCTCTGAGTGAACTGTAACTGCTTCTGCAGCTGAGTTCCCACAAACTG  149
      ||||| |||||||||||| ||||||| |||||||||||  |||||||| |
seq2  GTTCT-TGAGTGAACTGT-ACTGCTT-TGCAGCTGAGT--CCACAAAC-G  134

seq1  AATCTTTAAAAAATAAAAGTCTTCATTGTCTTTTCCATCCCAATGAGTTA  199
      ||||||  ||||||||||||||||| |||| |||||||||||||||||| 
seq2  AATCTT--AAAAATAAAAGTCTTCA-TGTC-TTTCCATCCCAATGAGTT-  179

seq1  ACATTCGTGCTTGATTTATCCTTTGCTCTGGGCCCCAGCCATCTCTTCTA  249
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  ACATTCGTGCTTGATTTAT-CTTTGCTCTGGGCCCCAGCCATCTTTTCTA  228

seq1  CATAGTCCAATGCAGACAGGTTTCTCTGAAGAAACTCAGGTTTGTCCGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCCAATGCAGACAGGTTTCTCTGAAGAAACTCAGGTTTGTCCGTC  278

seq1  CTTAGGGACAGCACCTAAATTAAATCCCAGTTTCCTAAATATCAGACAAA  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTAGGGACAGCACCTAAA-TAAATCCCAGTTTCCTAAATATCAGACAAA  327

seq1  AATCATACTAG-AACATTAACAGAGTAGAAGTCAAGGAGACTGTCCCAGA  398
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATCATACTAGAAACATTAACAGAGTAGAAGTCAAGGAGACTGTCCCAGA  377

seq1  CTCCAGTGCTGCCCATCCCCCACCCAGCATTTTAACATATAACAGCTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGCTGCCCATCCCCCACCCAGCATTTTAACATATAACAGCTGTT  427

seq1  TTACATGCTGAGCCACCATGCTGCTTTTTCCCAGGTTCACTATAAATGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCTGAGCCACCATGCTGCTTTTTCCCAGGTTCACTATAAATGTT  477

seq1  CCAGCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACTGGTTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACACTGGTTAT  527

seq1  TGCTATTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCTAAACTCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCTAAACTCAT  577

seq1  TTTACGTGTTTGAGTGAGGGCTCAACACTGCGTGCAGGACCCAGGAAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTGTTTGAGTGAGGGCTCAACACTGCGTGCAGGACCCAGGAAGTG  627

seq1  GAATGCTTCAGCCAACCAAGTGGGGATGGGTCTCCATCATTGACTTCCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTCAGCCAACCAAGTGGGGATGGGTCTCCATCATTGACTTCCAC  677

seq1  TCTGAGGTCTCAGAGACCACAGAAGCATGAAGTGCAATGAAATACAGGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCTCAGAGACCACAGAAGCATGAAGTGCAATGAAATACAGGGC  727

seq1  CTGAGTCTTCAGCTGCTCTCTTTTGTGGAGGTCAGCCAGGATGAGAGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTTCAGCTGCTCTCTTTTGTGGAGGTCAGCCAGGATGAGAGTTT  777

seq1  GTGCAGCATTCTCCACAGAGAGGTTCCTGCAGAGGGCATCCTCACACAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCATTCTCCACAGAGAGGTTCCTGCAGAGGGCATCCTCACACAGG  827

seq1  ACCTTCAGGCCCTCCAGACCATACTTGTCAGCAGCTGTCAGCACATCAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGGCCCTCCAGACCATACTTGTCAGCAGCTGTCAGCACATCAGT  877

seq1  GGCCATGGAGTGGCTTTGGAGGTGTGGCGCCTTCCCAGTGTAAATGAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGAGTGGCTTTGGAGGTGTGGCGCCTTCCCAGTGTAAATGAAGC  927

seq1  CCATCATCTCCTTAAAGACTTTGGGATCCAGGTCATGGATCTCAGTGGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCTCCTTAAAGACTTTGGGATCCAGGTCATGGATCTCAGTGGGG  977

seq1  TTTCCTAGTCTCTCCTCCATTTCATGTTCAAACATGGCTCTGAAAACTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGTCTCTCCTCCATTTCATGTTCAAACATGGCTCTGAAAACTGG  1027

seq1  AGAGCGAGCTGCTAGGATGGCCTTGTGAGCCCTGAATTCATGGCCAGCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGAGCTGCTAGGATGGCCTTGTGAGCCCTGAATTCATGGCCAGCTA  1077

seq1  CCAACAGGCAGCAGTCTGTGAACAGGGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  CCAACAGGCAGCAGTCTGTGAACAGGGAATTC  1109