BAC Information

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BAC

Clone NameB6Ng01-135H09
Chromosome10 (Build37)
Map Location 36,696,649 - 36,857,561
singlet/doubletdoublet
Overlap geneHdac2, Marcks
Upstream geneLOC667860, Hs3st5
Downstream geneLOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H09.bB6Ng01-135H09.g
ACCDH935490DH935491
length1,096557
definitionDH935490|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H09, 5' end.DH935491|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,696,649 - 36,697,751)(36,857,000 - 36,857,561)
sequence
gaattcccttcacgtctgacttgattacagaaaccctcttcttgttagtt
tataaaggtagcagcaatctttaattgtctttattaaattctaaacaaga
ggagcaagtaaagtgacttttgtaccaagaaagtgcatgactttcagacg
catgcagggttgggttggtggagaacccggccagtaggattggggctcga
atagtatactagtcttatgttagtgcttttaacttggttggtaggggagg
agatcaggaaaggaggaggttaacggggcactaggcacccagagagcctc
ttgacaactcatgtgagtgttttcctgctaagactgtgtgcttagtgaag
aatacttctgaagattgaatatggttttctccgtgtgtgctgcagtcttc
agaattgtacttgtagggtctctgtgccactgatctgtgaactttcagat
aggagcgtatgaactatccctaaacctcacaagagaaatcagagttgttc
ttagtggactgtgactactgactggtcatcataactcccagaaacacatt
tcagaatgttggctaatctcttactaaactaaaagacaaagatcggtaaa
tgatataaagctaattatgtgtctacactgagatcctttctgacctcttt
cccgtttttctcaaagtgtaattgagcagatggggctacatttagttcta
attgcaatgctcaggcttttaatactttatctagaaatataaactttgcc
tggtttagagtgaagcttgggaccaatcatgtagtgccttctaatgtata
gtgtataacagaattgaatgtatgcataatttatgtaattagacaccaat
ttgctttatgctttgtttattttctctgatagagataatcagaatcaaaa
tgtttggagacatagtccagaggaaagcacgtggcacaaaatatgaatat
aacaattactataattttatttcccagtgtactcctaagtttcttaacag
atacagagtactacagagtgtcatcgttgtcagatttatttactttttat
taaaatgtggtggctttctgtgtatgcctgagccccttgagtttag
tcagagggtttttgaagaccctttcctgcctgccaagaagggagcagttc
tggtgttttggtctggactgttcgtgtgagtggcaccttggccaccctcg
aggattgcctcagtgctgctgcgacccaggcagagagccatggttgggtg
ggctcaagaggtcggccatgggtggctgctttccaaacagcgagcaccca
ccacgcctcttttcctagagccaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaggcctgctctaaacctaccggggcaagacgtgctctgtcaagagc
ctttaaacccgttaaaaatgcaaaaaggagctgcccgggcgcaccccaat
ttgcagaatgatgggcgaaggtgggcgtggaagcggaggccagacttcag
acataatgggttttccccagccctgctggttgccgagcctcggagaggcc
gaccggggcagccacctgagctttgtttgcggactcccgggctgcgcgat
ccccagctcgggggcgcctcggcctgcgggcagggcccggctaggcaggg
tggggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_36696649_36697751
seq2: B6Ng01-135H09.b_43_1138

seq1  GAATTCCCTTCACGTCTGACTTGATTACAGAAACCCTCTTCTTGTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCACGTCTGACTTGATTACAGAAACCCTCTTCTTGTTAGTT  50

seq1  TATAAAGGTAGCAGCAATCTTTAATTGTCTTTATTAAATTCTAAACAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGTAGCAGCAATCTTTAATTGTCTTTATTAAATTCTAAACAAGA  100

seq1  GGAGCAAGTAAAGTGACTTTTGTACCAAGAAAGTGCATGACTTTCAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAGTAAAGTGACTTTTGTACCAAGAAAGTGCATGACTTTCAGACG  150

seq1  CATGCAGGGTTGGGTTGGTGGAGAACCCGGCCAGTAGGATTGGGGCTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGGTTGGGTTGGTGGAGAACCCGGCCAGTAGGATTGGGGCTCGA  200

seq1  ATAGTATACTAGTCTTATGTTAGTGCTTTTAACTTGGTTGGTAGGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATACTAGTCTTATGTTAGTGCTTTTAACTTGGTTGGTAGGGGAGG  250

seq1  AGATCAGGAAAGGAGGAGGTTAACGGGGCACTAGGCACCCAGAGAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGAAAGGAGGAGGTTAACGGGGCACTAGGCACCCAGAGAGCCTC  300

seq1  TTGACAACTCATGTGAGTGTTTTCCTGCTAAGACTGTGTGCTTAGTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAACTCATGTGAGTGTTTTCCTGCTAAGACTGTGTGCTTAGTGAAG  350

seq1  AATACTTCTGAAGATTGAATATGGTTTTCTCCGTGTGTGCTGCAGTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCTGAAGATTGAATATGGTTTTCTCCGTGTGTGCTGCAGTCTTC  400

seq1  AGAATTGTACTTGTAGGGTCTCTGTGCCACTGATCTGTGAACTTTCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTACTTGTAGGGTCTCTGTGCCACTGATCTGTGAACTTTCAGAT  450

seq1  AGGAGCGTATGAACTATCCCTAAACCTCACAAGAGAAATCAGAGTTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCGTATGAACTATCCCTAAACCTCACAAGAGAAATCAGAGTTGTTC  500

seq1  TTAGTGGACTGTGACTACTGACTGGTCATCATAACTCCCAGAAACACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGACTGTGACTACTGACTGGTCATCATAACTCCCAGAAACACATT  550

seq1  TCAGAATGTTGGCTAATCTCTTACTAAACTAAAAGACAAAGATCGGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGTTGGCTAATCTCTTACTAAACTAAAAGACAAAGATCGGTAAA  600

seq1  TGATATAAAGCTAATTATGTGTCTACACTGAGATCCTTTCTGACCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAGCTAATTATGTGTCTACACTGAGATCCTTTCTGACCTCTTT  650

seq1  CCCGTTTTTCTCAAAGTGTAATTGAGCAGATGGGGCTACATTTAGTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTTTTCTCAAAGTGTAATTGAGCAGATGGGGCTACATTTAGTTCTA  700

seq1  ATTGCAAGGCTCAGGCTTTTAATACTTTATCTAGAAATATAAACTTTGCC  750
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATGCTCAGGCTTTTAATACTTTATCTAGAAATATAAACTTTGCC  750

seq1  TGGTTTAGAGTGAAGCTTGGGACCAATCATGTAGTGCCTTCTAATGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGAGTGAAGCTTGGGACCAATCATGTAGTGCCTTCTAATGTATA  800

seq1  GTGTATAACAGAATTGAATGTATGCATAATTTATGTAATTAGACACCAA-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGTATAACAGAATTGAATGTATGCATAATTTATGTAATTAGACACCAAT  850

seq1  TTGCTTTATGCTTTGTTTATTTTCTCTGATAGAGATAATCAGAATCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATGCTTTGTTTATTTTCTCTGATAGAGATAATCAGAATCAAAA  900

seq1  TGTTTGGAGACATAGTCCAGAGGAAAGCACGTGGCAACAAAAATATAGAA  949
      ||||||||||||||||||||||||||||||||||||   ||||||| |||
seq2  TGTTTGGAGACATAGTCCAGAGGAAAGCACGTGGCA--CAAAATAT-GAA  947

seq1  TATAACAATTACTATAATTATATTTCCCAGTGTACTCCTAAGTTTCTTAA  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATAACAATTACTATAATTTTATTTCCCAGTGTACTCCTAAGTTTCTTAA  997

seq1  CAGATACAAGAGTACTACAGAGTGGCCATCGGTTGTCAGATTTATTTTAC  1049
      ||||||| ||||||||||||||| | |||| ||||||||||||| |||||
seq2  CAGATAC-AGAGTACTACAGAGT-GTCATC-GTTGTCAGATTTA-TTTAC  1043

seq1  TTTTATTTAAAATGTGTGTGCTTCTTGTGTATGCCTGGTGCCCTTGATGT  1099
      ||||  ||||||||||   ||||  ||||||||||||   ||||||| ||
seq2  TTTTTATTAAAATGTGGTGGCTTTCTGTGTATGCCTGAGCCCCTTGA-GT  1092

seq1  TTAG  1103
      ||||
seq2  TTAG  1096

seq1: chr10_36857000_36857561
seq2: B6Ng01-135H09.g_69_630 (reverse)

seq1  ACCCCACCCTGCCTAGCCGGGCCCTGCCCGCAGGCCGAGGCGCCCCCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCCTGCCTAGCCGGGCCCTGCCCGCAGGCCGAGGCGCCCCCGAG  50

seq1  CTGGGGATCGCGCAGCCCGGGAGTCCGCAAACAAAGCTCAGGTGGCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATCGCGCAGCCCGGGAGTCCGCAAACAAAGCTCAGGTGGCTGCC  100

seq1  CCGGTCGGCCTCTCCGAGGCTCGGCAACCAGCAGGGCTGGGGAAAACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCGGCCTCTCCGAGGCTCGGCAACCAGCAGGGCTGGGGAAAACCCA  150

seq1  TTATGTCTGAAGTCTGGCCTCCGCTTCCACGCCCACCTTCGCCCATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTGAAGTCTGGCCTCCGCTTCCACGCCCACCTTCGCCCATCATT  200

seq1  CTGCAAATTGGGGTGCGCCCGGGCAGCTCCTTTTTGCATTTTTAACGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATTGGGGTGCGCCCGGGCAGCTCCTTTTTGCATTTTTAACGGGT  250

seq1  TTAAAGGCTCTTGACAGAGCACGTCTTGCCCCGGTAGGTTTAGAGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCTCTTGACAGAGCACGTCTTGCCCCGGTAGGTTTAGAGCAGGC  300

seq1  CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTCTAGGAAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTCTAGGAAAAGAG  350

seq1  GCGTGGTGGGTGCTCGCTGTTTGGAAAGCAGCCACCCATGGCCGACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGGGTGCTCGCTGTTTGGAAAGCAGCCACCCATGGCCGACCTCT  400

seq1  TGAGCCCACCCAACCATGGCTCTCTGCCTGGGTCGCAGCAGCACTGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCACCCAACCATGGCTCTCTGCCTGGGTCGCAGCAGCACTGAGGC  450

seq1  AATCCTCGAGGGTGGCCAAGGTGCCACTCACACGAACAGTCCAGACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCGAGGGTGGCCAAGGTGCCACTCACACGAACAGTCCAGACCAAA  500

seq1  ACACCAGAACTGCTCCCTTCTTGGCAGGCAGGAAAGGGTCTTCAAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAACTGCTCCCTTCTTGGCAGGCAGGAAAGGGTCTTCAAAAACC  550

seq1  CACTGAGAATTC  562
      | ||||||||||
seq2  CTCTGAGAATTC  562