BAC Information

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BAC

Clone NameB6Ng01-135H12
Chromosome10 (Build37)12 (Build37)
Map Location 104,054,161 - 104,054,84014,870,463 - 14,871,512
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H12.bB6Ng01-135H12.g
ACCDH935496DH935497
length1,0651,041
definitionDH935496|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H12, 5' end.DH935497|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,161 - 104,054,840)(14,870,463 - 14,871,512)
sequence
gaattcagtgacaattaggcaggaaaatcatttcttttaataccatttta
agtgaaatttctgctgaagaaatgagctccaggaaagtgagagatcctac
ctcaaaaactaaggaagcaagtaaagaagttagacatgaaatgccagact
ctggcttgcacattcgtacagatatccggtgtacacactgaaacacacaa
acggacaagcatatacatatacatgccatgggttcccctcctccatcact
gaatggcccacctaaaaaaggaatattgagcccattaccgttttatttta
aatactgagctagacaagtagaccaatggaatagaattgaagacccagaa
atgaacccacacacctatggtcacttgatcttcgacaagggaggtaaaac
catccagtggaagaaagacagcattttcaacaattggtgctggcacaact
ggttgttatcatgtagaagaatgcgaattgatccatacttatctccttgt
actaaggtcaaatctaagtggatcaaggaacctcacataaaaccagagac
actgaaacttatagaggagaaagtggggaaaagccttgaagatatgggca
caggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcg
agaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaa
agacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatct
ttacctatcctaaatcagataggggactaatatccaacatatataaagga
ctcaagaaaggtggacttcagaaaatcaaataactcccattaaaaaatgg
ggctcagaactgaacaaagaattctcacctgaggaataccgaatggcaga
gaaacacctgaaaaatgttcaacatccttaatcatcagggaaatgcaaat
caaaacaaccctgagattccacctcacaccagtcagaatggctaagatca
aaaattcaagtaacagcagatgctggcatggatgtggagaagagacactc
ctcattgttgtggga
gaattctccagacattttatggtgatcataccccttaaaaatattttaaa
aatatagaaaattattcatgtcatctttaatcaaggagaaactatgaaca
aacacacaaaaactaattgaaatattacacatggctgctgaggaaagact
tacaataaatgaagagcaataaaagatataagaactgatctgataaaata
atgaattatatatacaatctaaacaaaatctgcatgttgttctatgatct
ttttcttctagaatttcattaagatgcaattagcactcatcaattttgaa
tattatgaaaattctaatagaggctattctgaatgggtcttctctaacat
ttagattgcacaactagggacatgtgcagccagtcaaagtgattaacaca
agggagccagcagctgtgaaattctccctcatcaaaggcaagttgtggca
gcatatagagaagattctgaggggaaagtgttctggaactgtttaataac
ttgggggtagtagagatacatttaggccagtgtttttggtatagaatgta
atcattttgttctagtatactctctccaaacatcacatgtccttccatgg
ctcttgccttagcaaaataccacatgagtctgtgttaccagacatatcca
gaaacttctgcttcagtccttgaatttggtttacaagtatgtaattgcat
ctatactcatgaggaaagttggtcgataattccttctttatttagtcttt
atgcaatttgccgaagagtggcctcataaaatgaattggacaatattctt
ctctttttaattttgtagaataacctgaggagtattgacattggtccttc
tttgaaagtcaggtagaattctgtgctaacaccactgggcccagaatttt
ggttgaaagatttcaatgactgctttccatttagttggggtaaaatacag
gtctatttaaatcattttatctgaacttgatttacttggtaagtgtacct
atcaaaaaattatcactgctttagattttcatgatgatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054161_104054840
seq2: B6Ng01-135H12.b_438_1112 (reverse)

seq1  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCA  50
      ||||| ||||||| |||||||||  ||| ||||||||||||  |||||||
seq2  TCCCA-CAACAAT-GAGGAGTGT--CTC-TTCTCCACATCCATGCCAGCA  45

seq1  TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGT  100
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTTACTTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGT  95

seq1  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  145

seq1  GAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAA  200
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAACA-TTTTTCAGGTGTTTCTCTGCCATTCGGTATTCCTCAGGTGAGAA  194

seq1  TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATAGG-GTTATTTGATTTT  249
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGAGTTATTTGATTTT  244

seq1  CTGAAGTCCACC-TTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC  298
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  CTGAAGTCCACCTTTCTTGAGTCCTTTATATATGTTGGATATTAGTCCCC  294

seq1  TATCTGAATTAGGATAGGTAAAGATCCTTTCTCAATCTGTTGGTGGTCTT  348
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT  344

seq1  TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTAT  398
      ||||||||||||||||||||||||||||||||||| ||||| | ||| ||
seq2  TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT  394

seq1  GAGGTCCCATTTATCAACTCTCTATCTTACAGCACAAGCCATTGCTGTTC  448
       ||||||||||| |||| |||| |||||||||||||||||||||||||||
seq2  TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC  444

seq1  TATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACT  498
      | |||||||||||||||||||| ||||||||||| ||||||||||| |||
seq2  TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT  494

seq1  TTTTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAAT  548
      || |||||||||||||||||||||||||||||||||||  ||||||| ||
seq2  TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAGGTTCCTTGAT  544

seq1  CCACTTAGATTTTACCTTAGTACAAGGAGATAGTAATTGATCAATTCACA  598
      |||||||||||| |||||||||||||||||||   || ||||||||| ||
seq2  CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCAATTCGCA  594

seq1  ATCTTCTACATGATAACAGCCAGTTGTGCCAGCATGATTTGTTGAAAATG  648
       ||||||||||||||||| |||||||||||||||  | ||||||||||||
seq2  TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG  644

seq1  CTGTCTTTTTTTCCACTGGATAGTTTTAGCTC  680
      ||||| ||| ||||||||||| |||||| |||
seq2  CTGTC-TTTCTTCCACTGGATGGTTTTACCTC  675

seq1: chr12_14870463_14871512
seq2: B6Ng01-135H12.g_66_1106

seq1  GAATTCTCCAGACATTTTATGGTGATCATACCCCTTAAAAATATTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGACATTTTATGGTGATCATACCCCTTAAAAATATTTTAAA  50

seq1  AATATAGAAAATTATTCATGTCATCTTTAATCAAGGAGAAACTATGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAAAATTATTCATGTCATCTTTAATCAAGGAGAAACTATGAACA  100

seq1  AACACACAAAAACTAATTGAAATATTACACATGGCTGCTGAGGAAAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAAAAACTAATTGAAATATTACACATGGCTGCTGAGGAAAGACT  150

seq1  TACAATAAATGAAGAGCAATAAAAGATATAAGAACTGATCTGATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAATGAAGAGCAATAAAAGATATAAGAACTGATCTGATAAAATA  200

seq1  ATGAATTATATATACAATCTAAACAAAATCTGCATGTTGTTCTATGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATATATACAATCTAAACAAAATCTGCATGTTGTTCTATGATCT  250

seq1  TTTTCTTCTAGAATTTCATTAAGATGCAATTAGCACTCATCAATTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTAGAATTTCATTAAGATGCAATTAGCACTCATCAATTTTGAA  300

seq1  TATTATGAAAATTCTAATAGAGGCTATTCTGAATGGGTCTTCTCTAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGAAAATTCTAATAGAGGCTATTCTGAATGGGTCTTCTCTAACAT  350

seq1  TTAGATTGCACAACTAGGGACATGTGCAGCCAGTCAAAGTGATTAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGCACAACTAGGGACATGTGCAGCCAGTCAAAGTGATTAACACA  400

seq1  AGGGAGCCAGCAGCTGTGAAATTCTCCCTCATCAAAGGCAAGTTGTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCAGCAGCTGTGAAATTCTCCCTCATCAAAGGCAAGTTGTGGCA  450

seq1  GCATATAGAGAAGATTCTGAGGGGAAAGTGTTCTGGAACTGTTTAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAGAGAAGATTCTGAGGGGAAAGTGTTCTGGAACTGTTTAATAAC  500

seq1  TTGGGGGTAGTAGAGATACATTTAGGCCAGTGTTTTTGGTATAGAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTAGTAGAGATACATTTAGGCCAGTGTTTTTGGTATAGAATGTA  550

seq1  ATCATTTTGTTCTAGTATACTCTCTCCAAACATCACATGTCCTTCCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTGTTCTAGTATACTCTCTCCAAACATCACATGTCCTTCCATGG  600

seq1  CTCTTGCCTTAGCAAAATACCACATGAGTCTGTGTTACCAGACATATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTTAGCAAAATACCACATGAGTCTGTGTTACCAGACATATCCA  650

seq1  GAAACTTCTGCTTCAGTCCTTGAATTTGGTTTACAAGTATGTAATTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCTGCTTCAGTCCTTGAATTTGGTTTACAAGTATGTAATTGCAT  700

seq1  CTATACTCATGAGGAAAGTTGGTCGATAATTCCTTCTTTATTTAGTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTCATGAGGAAAGTTGGTCGATAATTCCTTCTTTATTTAGTCTTT  750

seq1  ATGCAATTTGCCGAAGAGTGGCCTCATAAAATGAATTGGACAATATTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTTGCCGAAGAGTGGCCTCATAAAATGAATTGGACAATATTCTT  800

seq1  CTCTTTTTAATTTTGTAGAATAACCTGAGGAGTATTGACATTGGTCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTAATTTTGTAGAATAACCTGAGGAGTATTGACATTGGTCCTTC  850

seq1  TTTGAAAGTCAGGTAGAATTCTGTGCTAACACCACTGGGCCCAGAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGTCAGGTAGAATTCTGTGCTAACACCACTGGGCCCAGAATTTT  900

seq1  GGTTGAAAGAATTTCAATGACTGCTTCCATTTTAGTTGGGGTTACATACA  950
      ||||||||| |||||||||||||||| |  |||||||||||| | |||||
seq2  GGTTGAAAG-ATTTCAATGACTGCTTTCCATTTAGTTGGGGTAAAATACA  949

seq1  GGTCTATTTAAATCA-TGTATCTGAACTTGATTTAACTTTGGTAAGTTGT  999
      ||||||||||||||| | |||||||||||||||||   |||||||| |||
seq2  GGTCTATTTAAATCATTTTATCTGAACTTGATTTA--CTTGGTAAG-TGT  996

seq1  ACCTATCAAAAAATTATTCACTGCTTTTAGATTTTCCAATTTGATGATGT  1049
      |||||||||||||||| ||||||| |||||||||||     |||||||||
seq2  ACCTATCAAAAAATTA-TCACTGC-TTTAGATTTTC----ATGATGATGT  1040

seq1  A  1050
      |
seq2  A  1041