BAC Information

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BAC

Clone NameB6Ng01-135L15
Chromosome10 (Build37)
Map Location 92,604,424 - 92,760,821
singlet/doubletdoublet
Overlap geneEG667314, Pctk2, Elk3
Upstream geneLOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik
Downstream geneLOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135L15.bB6Ng01-135L15.g
ACCDH935692DH935693
length9321,099
definitionDH935692|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L15, 5' end.DH935693|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,604,424 - 92,605,353)(92,759,699 - 92,760,821)
sequence
gaattcaacatgagcctctgcacccacaggtttaaccatgcgttggtagt
ttgtgtctgatcctatacatagggtcttgcctcttttctaagatttttgg
ctatacatatgggtaggggtggacatacatgtgttttcatgtgtgcatac
atgagtgtgtgtgtaggtcataggttgacatcggtgccttccttgattgc
tttctacctttgtattggtgttgaggatctctcttctctctctctctctc
tctctctctctctctctctctttctctctttgtctctgaactgagagtcc
ccccatttatgtagctagccagcttgccctgggcatctcgtgcctctgtt
tcccaagtgcaggaccataggcaggtcccatgcctgtcccagcaccagtg
ttaacactcactactcactcatccacctccctagtctcctttgtctttaa
aacaacttcagctgaacatggtgacgcacaccttcgattccagcactcag
gaggcagaagcaggcagatctctgtgagtttgaggccaacctggtctaca
ttgtgagttccagggctagaccctgtctcgaataataaaataaaaaacag
aaaatagcaaaagtatgtatttatacttcgtgtacatatgcatatttata
tgaaagtgcagttattgttactcattctagattatactagattctgcctg
gcaatcattatgaaacatggtcctttaagtctttgattcctcaaaataga
tgagtagaactaagtgataaagtagtttagtgcataattaaagctaagat
gtaagcttttgaattttatttaaaattttgtccaaacacaggattggatt
aaaacaacaccaacaacaacaaaaacttcaaattacttcaagttgaaatt
gtggctcagaccattgcagcagatttgagaga
gaattcctacctttttgcctcaggagtttccccttcccagaaagtcgcct
ctgcaacataatagaaggaagtcctgatttagaaaggtttcacagtttca
tcgacacaatgagagagctggaggatgctctggcaggaagcgccccagtt
gctggatgtggaaaaaccaccatcattgtgtgtcctgcagaagtgttctc
agcgtgctcggggcttgtgggtttttttttttttttttacttctaccagt
tgcctctttagcacaaagagtgttcaagtttatctgaaagattccagttt
tctgtctcttagaaggaagattgctttgatttttttttcttctcgtaaaa
ccatcttcaagtatcaaagtgaataaaccattcctaatcttaaatcaagc
atagatgttccagtgtttctccccgaattcacaagattgaatttactaac
attataagctagaacatttgggggaaaggtctgccaatccagccaaggtc
tctgaaatacacggatagaatgctgtgggaaggagtgctcactgctctct
acggaagctcagctcaaagaccgctggcaagatttgagtaagataaattg
tctgtgtctgtgtgatggaaagtcaccaaggatgctctgggtgccaggtc
ccttccaggggctgccacacacaggtcagaaactcccaggctgctgctct
ccccagaaggaacaattctcaggaatcatttctgagtactatgcaaacgt
ccatggggggtccggtgggggataggtttccacttccgtcttcaggttca
taatccttgcgtccacacgtcaaataaaagaccagtccctccatgtctga
gttctggaattcacaggaggcttatgtgctgagttttccattagaagcca
acttcagctaaggcctgtgacacaggcctgaaatcccagctactcagagc
tgtgacagtacaacttgaactttgcaagttcaaggtcactcagagtctga
ggattcagatcagcctgcactttactcagatttgattcaaatttaaagtg
aacaagctacaacagttgtggtcagtgccactctaattcaatgccatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92604424_92605353
seq2: B6Ng01-135L15.b_46_977

seq1  GAATTCAACATGAGCCTCTGCACCCACAGGTTTAACCATGCGTTGGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATGAGCCTCTGCACCCACAGGTTTAACCATGCGTTGGTAGT  50

seq1  TTGTGTCTGATCCTATACATAGGGTCTTGCCTCTTTTCTAAGATTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGATCCTATACATAGGGTCTTGCCTCTTTTCTAAGATTTTTGG  100

seq1  CTATACATATGGGTAGGGGTGGACATACATGTGTTTTCATGTGTGCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATATGGGTAGGGGTGGACATACATGTGTTTTCATGTGTGCATAC  150

seq1  ATGAGTGTGTGTGTAGGTCATAGGTTGACATCGGTGCCTTCCTTGATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTGTGTGTAGGTCATAGGTTGACATCGGTGCCTTCCTTGATTGC  200

seq1  TTTCTACCTTTGTATTGGTGTTGAGGATCTCTCTTCTCTCTCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCTTTGTATTGGTGTTGAGGATCTCTCTTCTCTCTCTCTCTCTC  250

seq1  TCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTGTCTCTGAACTGAGAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTGTCTCTGAACTGAGAGTCC  300

seq1  CCCCATTTATGTAGCTAGCCAGCTTGCCCTGGGCATCTCGTGCCTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTATGTAGCTAGCCAGCTTGCCCTGGGCATCTCGTGCCTCTGTT  350

seq1  TCCCAAGTGCAGGACCATAGGCAGGTCCCATGCCTGTCCCAGCACCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCAGGACCATAGGCAGGTCCCATGCCTGTCCCAGCACCAGTG  400

seq1  TTAACACTCACTACTCACTCATCCACCTCCCTAGTCTCCTTTGTCTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTCACTACTCACTCATCCACCTCCCTAGTCTCCTTTGTCTTTAA  450

seq1  AACAACTTCAGCTGAACATGGTGACGCACACCTTCGATTCCAGCACTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTCAGCTGAACATGGTGACGCACACCTTCGATTCCAGCACTCAG  500

seq1  GAGGCAGAAGCAGGCAGATCTCTGTGAGTTTGAGGCCAACCTGGTCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAAGCAGGCAGATCTCTGTGAGTTTGAGGCCAACCTGGTCTACA  550

seq1  TTGTGAGTTCCAGGGCTAGACCCTGTCTCGAATAATAAAATAAAAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTTCCAGGGCTAGACCCTGTCTCGAATAATAAAATAAAAAACAG  600

seq1  AAAATAGCAAAAGTATGTATTTATACTTCGTGTACATATGCATATTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCAAAAGTATGTATTTATACTTCGTGTACATATGCATATTTATA  650

seq1  TGAAAGTGCAGTTATTGTTACTCATTCTAGATTATACTAGATTCTGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGCAGTTATTGTTACTCATTCTAGATTATACTAGATTCTGCCTG  700

seq1  GCAATCATTATGAAACATGGTCCTTTAAGTCTTTGATTCCTCAAAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATTATGAAACATGGTCCTTTAAGTCTTTGATTCCTCAAAATAGA  750

seq1  TGAGTAGAACTAAGTGATAAAGTAGTTTAGTGCATAATTAAAGCTAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGAACTAAGTGATAAAGTAGTTTAGTGCATAATTAAAGCTAAGAT  800

seq1  GTAAGCTTTTGAATTTTATTTAAAATTTTGTCCAAACACAGGATTGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTTTGAATTTTATTTAAAATTTTGTCCAAACACAGGATTGGATT  850

seq1  AAAACAACAACAACAACAACAAAAAC-TCAAAATAC-TCAAGTTGAAATT  898
      ||||||||| |||||||||||||||| ||||| ||| |||||||||||||
seq2  AAAACAACACCAACAACAACAAAAACTTCAAATTACTTCAAGTTGAAATT  900

seq1  GTGGCTCAGACCATTGCAGCAGATTTGAGAGA  930
      ||||||||||||||||||||||||||||||||
seq2  GTGGCTCAGACCATTGCAGCAGATTTGAGAGA  932

seq1: chr10_92759699_92760821
seq2: B6Ng01-135L15.g_69_1167 (reverse)

seq1  TAATGGGGTATTGAATCTAGGAGTCGCACTGGACCAACAACTGTTGATAG  50
      ||||  || ||||||| || |||| ||||| |||| |||||||||| |||
seq2  TAAT--GGCATTGAAT-TA-GAGTGGCACT-GACC-ACAACTGTTG-TAG  43

seq1  CTCTGTTCACTTTTTAAATTTTTGAGTCAAAATCTGAGTAAGGTGCAGGC  100
      || |||||||  ||||||  ||||| || |||||||||||| ||||||||
seq2  CT-TGTTCAC--TTTAAA--TTTGAATC-AAATCTGAGTAAAGTGCAGGC  87

seq1  TGATCCTGAATTCTCTACAGACTCTGAGTTGACCTTGAACTTGCAAGGTT  150
      |||| |||||| ||   ||||||||||| ||||||||||||||||| |||
seq2  TGAT-CTGAATCCT---CAGACTCTGAG-TGACCTTGAACTTGCAAAGTT  132

seq1  CAAGTTTGTACCTGTCACAGCCTTCTGAGTAGCTGGGATTTCAGGCCTGT  200
      |||| ||||| ||||||||||  |||||||||||||||||||||||||||
seq2  CAAG-TTGTA-CTGTCACAGC--TCTGAGTAGCTGGGATTTCAGGCCTGT  178

seq1  GTCACCAGGCC-TAGCTTGAGGTTGGCTCTTAATGGAAAACTCAGCACAT  249
      |||| |||||| |||| ||| |||||||  ||||||||||||||||||||
seq2  GTCA-CAGGCCTTAGC-TGAAGTTGGCTTCTAATGGAAAACTCAGCACAT  226

seq1  AAGCCT-CTGTGAATTCCAGAACTCAGACATGGAGGGACTGGTCCTTTTA  298
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGCCTCCTGTGAATTCCAGAACTCAGACATGGAGGGACTGGT-CTTTTA  275

seq1  TTTGACGTGTGGACGCAAGGATTATGGAACCTGAAGACGGAAGTGGAAAC  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGACGTGTGGACGCAAGGATTAT-GAACCTGAAGACGGAAGTGGAAAC  324

seq1  CTATCCCCCACCGGACCCCCCATGGACGTTTGCATAGTACTCAGAAATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCCCACCGGACCCCCCATGGACGTTTGCATAGTACTCAGAAATGA  374

seq1  TTCCTGAGAATTGTTCCTTCTGGGGAGAGCAGCAGCCTGGGAGTTTCTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGAATTGTTCCTTCTGGGGAGAGCAGCAGCCTGGGAGTTTCTGA  424

seq1  CCTGTGTGTGGCAGCCCCTGGAAGGGACCTGGCACCCAGAGCATCCTTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGTGGCAGCCCCTGGAAGGGACCTGGCACCCAGAGCATCCTTGG  474

seq1  TGACTTTCCATCACACAGACACAGACAATTTATCTTACTCAAATCTTGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCCATCACACAGACACAGACAATTTATCTTACTCAAATCTTGCC  524

seq1  AGCGGTCTTTGAGCTGAGCTTCCGTAGAGAGCAGTGAGCACTCCTTCCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTCTTTGAGCTGAGCTTCCGTAGAGAGCAGTGAGCACTCCTTCCCA  574

seq1  CAGCATTCTATCCGTGTATTTCAGAGACCTTGGCTGGATTGGCAGACCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCTATCCGTGTATTTCAGAGACCTTGGCTGGATTGGCAGACCTT  624

seq1  TCCCCCAAATGTTCTAGCTTATAATGTTAGTAAATTCAATCTTGTGAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAAATGTTCTAGCTTATAATGTTAGTAAATTCAATCTTGTGAATT  674

seq1  CGGGGAGAAACACTGGAACATCTATGCTTGATTTAAGATTAGGAATGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGAAACACTGGAACATCTATGCTTGATTTAAGATTAGGAATGGTT  724

seq1  TATTCACTTTGATACTTGAAGATGGTTTTACGAGAAGAAAAAAAAATCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTTTGATACTTGAAGATGGTTTTACGAGAAGAAAAAAAAATCAA  774

seq1  AGCAATCTTCCTTCTAAGAGACAGAAAACTGGAATCTTTCAGATAAACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTTCCTTCTAAGAGACAGAAAACTGGAATCTTTCAGATAAACTT  824

seq1  GAACACTCTTTGTGCTAAAGAGGCAACTGGTAGAAGTAAAAAAAAAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTCTTTGTGCTAAAGAGGCAACTGGTAGAAGTAAAAAAAAAAAAA  874

seq1  AAAACCCACAAGCCCCGAGCACGCTGAGAACACTTCTGCAGGACACACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCACAAGCCCCGAGCACGCTGAGAACACTTCTGCAGGACACACAA  924

seq1  TGATGGTGGTTTTTCCACATCCAGCAACTGGGGCGCTTCCTGCCAGAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGGTTTTTCCACATCCAGCAACTGGGGCGCTTCCTGCCAGAGCA  974

seq1  TCCTCCAGCTCTCTCATTGTGTCGATGAAACTGTGAAACCTTTCTAAATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGCTCTCTCATTGTGTCGATGAAACTGTGAAACCTTTCTAAATC  1024

seq1  AGGACTTCCTTCTATTATGTTGCAGAGGCGACTTTCTGGGAAGGGGAAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCCTTCTATTATGTTGCAGAGGCGACTTTCTGGGAAGGGGAAAC  1074

seq1  TCCTGAGGCAAAAAGGTAGGAATTC  1123
      |||||||||||||||||||||||||
seq2  TCCTGAGGCAAAAAGGTAGGAATTC  1099