BAC Information

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BAC

Clone NameB6Ng01-135P04
Chromosome10 (Build37)
Map Location 100,646,566 - 100,788,546
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P04.bB6Ng01-135P04.g
ACCDH935858DH935859
length1,074801
definitionDH935858|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P04, 5' end.DH935859|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,787,511 - 100,788,546)(100,646,566 - 100,647,366)
sequence
gaattccaaagcttcatggtattgttagtgggtcattctctgtgttctac
ttgtagatctagatgtgaattataagttgtacccactgtcacatctttgt
tccaacatcattgacattaaccccatgtaaccataatctcaatccaaatg
ctttcttttataaatagccttgattattgaatagctaagtaactaagaaa
aatgttggtagccaggattcgtctatttctgtgacagacctgaacatttg
aggggttgttgcttgatgtgatttgttttgttagagaaatatggaagact
ttggtacttcagactaacaaaattgatgaacagtatatgcgggatttagt
gagccatacttgcagcatttttgaagatagtattgttgagacctgaggag
atgaggagattacggagaaccagccaaaagatttcagaaaggaaatatat
tagcaactgggctacagacaattttcatgatgttttagcaaagaaaatgg
ttgctttctaaccttatctaaattgcctgtaaaaaatttataataatcga
ctttagtgacctaggataaagccaaacactactggtataagtagtaacaa
caacaaacaacaataataatgccctctgatatcagacatgtagcacaggt
tttagtatttgctttgctgggttttagttggtttggtccagtaggcctga
tgccccatttattaatttatgaatgataatgaaacttctgtgtcactgtt
tgttataagaatgaatttttattttgcttctttaatttattggatgtcac
agatttccatgacacagtgtcaaggataaccatctggaggagtcccacta
cggatccaatattggcgatgtcacagaagcaaagatcttgaactggagca
atgattcatttcaatttaaattttctagtgatatatgtggacagaggaat
ataccatggtcagactgtaacatactacatcttcatgatgaaatgttttc
tgtgatttgtgatttctatagtttatgtttgtttgtgtttttcctcttat
tggggcagtttgcagatgagtaga
gaattctttccggaattctgggtttatgaagttaaaattaattttggaat
caataagtattatctcctttctcctttatatagacacatcactattcatg
acaaatggcacatttaccctccaaaatataaagttcaaaaagtttttccc
agtcttttatctatgaaagtttaatactagaattaattatttttaattgt
gtatttagaaggtgccttttacatgtagacaataacgtttgaaactgagt
ctcaaagcaccaattttagcttaattaggtcatgtatttgttcaatggag
agtttcaatgtctctgctgcattcccgaaattacatgtccttatctgtaa
aaacagaaaatgtaactcacacatattaaacagaattactcatggttgaa
agtgataacataatatgtgtgccagaagagaatttgaatttttattgtgt
ttggtcttcctgttgttagctgttcccatttgcagaaggatacatagagc
agcaggagcttagctttctgttggttaggttcacagtctcaattatgaca
tctaactgcttctagactttttcaatttcttgtgtttaagttcttttgga
aacttgaaaggaaactcctttctacctgttgggctatcatgtccaattat
gatctgttttttgcttgaacttatatatcattttgtcaggattggttgtt
atcactaataagcctgttcttttcgatggagaggaagaaagggagtggat
ttgcagtagagaggaggtaaggagggataaggaagagtagatggagggaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100787511_100788546
seq2: B6Ng01-135P04.b_95_1116 (reverse)

seq1  TCTACCCTTCATCCTTGCAAACTGCCCCCAAAATAAAGAGAAAAACACAA  50
      |||||   |||||  |||||||||||||   |||||   |||||||||||
seq2  TCTAC---TCATC--TGCAAACTGCCCC---AATAAGAGGAAAAACACAA  42

seq1  ACAAACATAAACTATAAGAAATCCAACAAATCACAGAAAACATTTCATCA  100
      ||||||||||||||| |||||||  |||||||||||||||||||||||||
seq2  ACAAACATAAACTAT-AGAAATC--ACAAATCACAGAAAACATTTCATCA  89

seq1  TGGAAGATGTAGTATGTTACAGTCTGACCCATGGTATATTCCTCTGTCCA  150
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  T-GAAGATGTAGTATGTTACAGTCTGA-CCATGGTATATTCCTCTGTCCA  137

seq1  CATATATTCACTAGAAAATTTAAATTGAAATGAATCATTGCTCCAGTTCA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATATA-TCACTAGAAAATTTAAATTGAAATGAATCATTGCTCCAGTTCA  186

seq1  AGATCTTTGCTTCTGTGACATCGCCAATATTGGATCCGTAGTGGGACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTGCTTCTGTGACATCGCCAATATTGGATCCGTAGTGGGACTCC  236

seq1  TCCAGATGGTTATCCTTGACACTGTGTCATGGAAATCTGTGACATCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGGTTATCCTTGACACTGTGTCATGGAAATCTGTGACATCCAAT  286

seq1  AAATTAAAGAAGCAAAATAAAAATTCATTCTTATAACAAACAGTGACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGAAGCAAAATAAAAATTCATTCTTATAACAAACAGTGACACA  336

seq1  GAAGTTTCATTATCATTCATAAATTAATAAATGGGGCATCAGGCCTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCATTATCATTCATAAATTAATAAATGGGGCATCAGGCCTACTG  386

seq1  GACCAAACCAACTAAAACCCAGCAAAGCAAATACTAAAACCTGTGCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAACCAACTAAAACCCAGCAAAGCAAATACTAAAACCTGTGCTACA  436

seq1  TGTCTGATATCAGAGGGCATTATTATTGTTGTTTGTTGTTGTTACTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATATCAGAGGGCATTATTATTGTTGTTTGTTGTTGTTACTACTT  486

seq1  ATACCAGTAGTGTTTGGCTTTATCCTAGGTCACTAAAGTCGATTATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGTAGTGTTTGGCTTTATCCTAGGTCACTAAAGTCGATTATTATA  536

seq1  AATTTTTTACAGGCAATTTAGATAAGGTTAGAAAGCAACCATTTTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTACAGGCAATTTAGATAAGGTTAGAAAGCAACCATTTTCTTTG  586

seq1  CTAAAACATCATGAAAATTGTCTGTAGCCCAGTTGCTAATATATTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACATCATGAAAATTGTCTGTAGCCCAGTTGCTAATATATTTCCTT  636

seq1  TCTGAAATCTTTTGGCTGGTTCTCCGTAATCTCCTCATCTCCTCAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATCTTTTGGCTGGTTCTCCGTAATCTCCTCATCTCCTCAGGTCT  686

seq1  CAACAATACTATCTTCAAAAATGCTGCAAGTATGGCTCACTAAATCCCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATACTATCTTCAAAAATGCTGCAAGTATGGCTCACTAAATCCCGC  736

seq1  ATATACTGTTCATCAATTTTGTTAGTCTGAAGTACCAAAGTCTTCCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGTTCATCAATTTTGTTAGTCTGAAGTACCAAAGTCTTCCATAT  786

seq1  TTCTCTAACAAAACAAATCACATCAAGCAACAACCCCTCAAATGTTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAACAAAACAAATCACATCAAGCAACAACCCCTCAAATGTTCAGG  836

seq1  TCTGTCACAGAAATAGACGAATCCTGGCTACCAACATTTTTCTTAGTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACAGAAATAGACGAATCCTGGCTACCAACATTTTTCTTAGTTAC  886

seq1  TTAGCTATTCAATAATCAAGGCTATTTATAAAAGAAAGCATTTGGATTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATTCAATAATCAAGGCTATTTATAAAAGAAAGCATTTGGATTGA  936

seq1  GATTATGGTTACATGGGGTTAATGTCAATGATGTTGGAACAAAGATGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGGTTACATGGGGTTAATGTCAATGATGTTGGAACAAAGATGTGA  986

seq1  CAGTGGGTACAACTTATAATTCACATCTAGATCTAC  1036
      ||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTACAACTTATAATTCACATCTAGATCTAC  1022

seq1: chr10_100646566_100647366
seq2: B6Ng01-135P04.g_67_867

seq1  GAATTCTTCCCGGAATTCTGGGTTTATGAAGTTAAAATTAATTTTGGAAT  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCGGAATTCTGGGTTTATGAAGTTAAAATTAATTTTGGAAT  50

seq1  CAATAAGTATTATCTCCTTTCTCCTTTATATAGACACATCACTATTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGTATTATCTCCTTTCTCCTTTATATAGACACATCACTATTCATG  100

seq1  ACAAATGGCACATTTACCCTCCAAAATATAAAGTTCAAAAAGTTTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCACATTTACCCTCCAAAATATAAAGTTCAAAAAGTTTTTCCC  150

seq1  AGTCTTTTATCTATGAAAGTTTAATACTAGAATTAATTATTTTTAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTATCTATGAAAGTTTAATACTAGAATTAATTATTTTTAATTGT  200

seq1  GTATTTAGAAGGTGCCTTTTACATGTAGACAATAACGTTTGAAACTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGAAGGTGCCTTTTACATGTAGACAATAACGTTTGAAACTGAGT  250

seq1  CTCAAAGCACCAATTTTAGCTTAATTAGGTCATGTATTTGTTCAATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCACCAATTTTAGCTTAATTAGGTCATGTATTTGTTCAATGGAG  300

seq1  AGTTTCAATGTCTCTGCTGCATTCCCGAAATTACATGTCCTTATCTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAATGTCTCTGCTGCATTCCCGAAATTACATGTCCTTATCTGTAA  350

seq1  AAACAGAAAATGTAACTCACACATATTAAACAGAATTACTCATGGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAATGTAACTCACACATATTAAACAGAATTACTCATGGTTGAA  400

seq1  AGTGATAACATAATATGTGTGCCAGAAGAGAATTTGAATTTTTATTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAACATAATATGTGTGCCAGAAGAGAATTTGAATTTTTATTGTGT  450

seq1  TTGGTCTTCCTGTTGTTAGCTGTTCCCATTTGCAGAAGGATACATAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTCCTGTTGTTAGCTGTTCCCATTTGCAGAAGGATACATAGAGC  500

seq1  AGCAGGAGCTTAGCTTTCTGTTGGTTAGGTTCACAGTCTCAATTATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGCTTAGCTTTCTGTTGGTTAGGTTCACAGTCTCAATTATGACA  550

seq1  TCTAACTGCTTCTAGACTTTTTCAATTTCTTGTGTTTAAGTTCTTTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTGCTTCTAGACTTTTTCAATTTCTTGTGTTTAAGTTCTTTTGGA  600

seq1  AACTTGAAAGGAAACTCCTTTCTACCTGTTGGGCTATCATGTCCAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAAGGAAACTCCTTTCTACCTGTTGGGCTATCATGTCCAATTAT  650

seq1  GATCTGTTTTTTGCTTGAACTTATATATCATTTTGTCAGGATTGGTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTTTTTGCTTGAACTTATATATCATTTTGTCAGGATTGGTTGTT  700

seq1  ATCACTAATAAGCCTGTTCTTTTCGATGGAGAGGAAGAAAGGGAGTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAATAAGCCTGTTCTTTTCGATGGAGAGGAAGAAAGGGAGTGGAT  750

seq1  TTGCAGTAGAGAGGAGGTAAGGAGGGATAAGGAAGAGTAGATGGAGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTAGAGAGGAGGTAAGGAGGGATAAGGAAGAGTAGATGGAGGGAA  800

seq1  A  801
      |
seq2  A  801