BAC Information

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BAC

Clone NameB6Ng01-136D09
Chromosome10 (Build37)
Map Location 64,309,170 - 64,423,726
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136D09.bB6Ng01-136D09.g
ACCDH936045DH936046
length1,1661,185
definitionDH936045|Mus musculus domesticus DNA, BAC clone: B6Ng01-136D09, 5' end.DH936046|Mus musculus domesticus DNA, BAC clone: B6Ng01-136D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,422,562 - 64,423,726)(64,309,170 - 64,310,375)
sequence
gaattcatacattaaagaaaacaacacaatcaaataaatgtctctctgga
atgtgattgtaacgattgagcttagactcaggtcagagatagagaatcaa
taatgattcgtttcctctctctgcccctgatgataacctttgcttttttt
gtaactgcatttacttcaagaacatcaatacattaagagaaagttcagtg
ctaggatgtagaaggatgagatgatgctaatacataaggatactggtaca
gcttcttaaaaagtgttccagtaatgtggcttcctaaattgttcatcacg
ctttaacttaaatttataatcttggtacatgtccttctcaaagtcactga
taactgaatccaatataggcatcaaatattattttattactgtgtctgca
ctagagaaataatctaatgttattaaaagatgagcacaaaccactgggca
ttatttctaccatgaaaatttaaaagcagattgaaactcaaggccaccaa
agaatttatgcaagttcccttaactaaaaatatttataatatactatttc
aaaaacaacatttagatttttttatctcaggcctgaaagttttgagttat
aaaactaaatatgtagaaaatggagactaataaatagtaataaaataatt
gaattaatgtatgcttttatattcccttattttaaaattttacagaactc
atttcagaattctctctgtacacattataaggtttaaaagctgttccata
tgactgtgaatttcttaaggtagtattcaaatgctgatatattgcttaat
ctctgaagttaaaaataatatatatatgcatatgtgtgtatatacatata
taagtatacacatacacacatgcactcacacacacataaatatgtatatt
aaaaatttttaaaaagaaacctagaaagtgttcttgcttaattacatata
ccttatactgtgacagagtttgtcctatgtaaattcatatgagaaagtac
tgagcacaccctggtgtctgtttttagtgtgttctggtgtgtaacagtgg
aagtaacagcagtacttcacagctgaatacgatgagttcttcccccagaa
tttggatctcctgcctttaacttgaactgcgaatttcagcctgggtggga
gaagaatttaatctgt
gaattcaacaaattcgcttctaaattggaataattttttttagtccttcc
atactttgtcttaaaatacattctggttttcctaatttatttaatttttt
ctagacttatctataatttctataatgtctactattaagaacttacatca
ggaaagattttggactaggctactatgataggaaaccaaagctagaataa
agtttgtgctccattttgcaaaacaaacaagcaaacaaacaaataaacaa
atggactgaagatttttcacagatgaaattataagattttattatcattt
ccagtgctaatcagtttgactaccaacaatagtcaacttatggtaaattt
ctttccatgatgaaatgttcctttgaaagttaggctcctcctcttctgaa
aaactggggaaattggagagaatgtggcatagctttcaaatgaatggttc
ccacctttcagagaaagacattaatatgctataaaatggacaagctttta
agaatatttgtttctcaaagaggcaaagaaataatttacaatcataaatg
taatagagtagagagtcccattgggaatgattgaaagtttattcatgctc
agggaagcataagtacattctagtcatgtccttagttcaggttctgacat
ggtctcctgcatcaggtcctggcattgtatctgtatccacttttattgcc
tctcattctctatcttaaactcaagtgatatttctaaaggcacttgatat
tttaccaccatacattgaaaataagactctgggtctgagtgccatttctt
gtgatgttcatattaaattcagcctacctctgccatgtgtaaggtacctc
tagatttgttgcttgcttctatcttccacatctcaggtcaactggttccc
tctagccccacctctttttaatatcagctgctattaggcgtttgacttct
ctcaagcatttatttacctgtgaaagtcatagtcacatcagtaccttttt
ttttttcttcctcaccagtaatacttaattcttccatagaattctaattg
ctcaggaatttcatattctaacagcctcctcaatcatgcacagtgataca
atatcttctagccatagcaatcattgtagcatgatctcatctgctttgac
ttaattaagttacctataacgtaatacagggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64422562_64423726
seq2: B6Ng01-136D09.b_49_1214 (reverse)

seq1  ACAGATTAAATTCTACTCCCACC--AGCTGAAAATCTGCAG-TCAAGTTA  47
      |||||||||||||| ||||||||   ||||||| || |||| ||||||||
seq2  ACAGATTAAATTCTTCTCCCACCCAGGCTGAAATTC-GCAGTTCAAGTTA  49

seq1  AA-GCA-GAGATCCAAAATCTGGGGGGAGAACTCATCGTA-TCAGCTGTG  94
      || ||| |||||||||| |||||||| ||||||||||||| |||||||||
seq2  AAGGCAGGAGATCCAAATTCTGGGGGAAGAACTCATCGTATTCAGCTGTG  99

seq1  -AGTACTGCCTGTTACTTCCACTGTTACACA-CAGAACACACTAGAAACA  142
       ||||||| |||||||||||||||||||||| |||||||||||| |||||
seq2  AAGTACTG-CTGTTACTTCCACTGTTACACACCAGAACACACTAAAAACA  148

seq1  GAACAACCAGGGTGTGGCTCAGTACTTTTCTCATATGAATTTAACATAGG  192
      ||   |||||||||| ||||||||| |||||||||||||||| |||||||
seq2  GA--CACCAGGGTGT-GCTCAGTAC-TTTCTCATATGAATTT-ACATAGG  193

seq1  ACAAACTCTGTCACAGTATAAGGTATATGTAATTAAGCAAGAACACCTTC  242
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAAACTCTGTCACAGTATAAGGTATATGTAATTAAGCAAGAACACTTTC  243

seq1  TAGGTTTCTTTTTAAAAATTTTTAATATACATATTTATGTGTGTGTGAGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCTTTTTAAAAATTTTTAATATACATATTTATGTGTGTGTGAGT  293

seq1  GCATGTGTGTATGTGTATACTTATATATGTATATACACACATATGCATAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTGTATGTGTATACTTATATATGTATATACACACATATGCATAT  343

seq1  ATATATTATTTTTAACTTCAGAGATTAAGCAATATATCAGCATTTGAATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATTTTTAACTTCAGAGATTAAGCAATATATCAGCATTTGAATA  393

seq1  CTACCTTAAGAAATTCACAGTCATATGGAACAGCTTTTAAACCTTATAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTAAGAAATTCACAGTCATATGGAACAGCTTTTAAACCTTATAAT  443

seq1  GTGTACAGAGAGAATTCTGAAATGAGTTCTGTAAAATTTTAAAATAAGGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGAGAGAATTCTGAAATGAGTTCTGTAAAATTTTAAAATAAGGG  493

seq1  AATATAAAAGCATACATTAATTCAATTATTTTATTACTATTTATTAGTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGCATACATTAATTCAATTATTTTATTACTATTTATTAGTCT  543

seq1  CCATTTTCTACATATTTAGTTTTATAACTCAAAACTTTCAGGCCTGAGAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTACATATTTAGTTTTATAACTCAAAACTTTCAGGCCTGAGAT  593

seq1  AAAAAAATCTAAATGTTGTTTTTGAAATAGTATATTATAAATATTTTTAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCTAAATGTTGTTTTTGAAATAGTATATTATAAATATTTTTAG  643

seq1  TTAAGGGAACTTGCATAAATTCTTTGGTGGCCTTGAGTTTCAATCTGCTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGAACTTGCATAAATTCTTTGGTGGCCTTGAGTTTCAATCTGCTT  693

seq1  TTAAATTTTCATGGTAGAAATAATGCCCAGTGGTTTGTGCTCATCTTTTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTCATGGTAGAAATAATGCCCAGTGGTTTGTGCTCATCTTTTA  743

seq1  ATAACATTAGATTATTTCTCTAGTGCAGACACAGTAATAAAATAATATTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTAGATTATTTCTCTAGTGCAGACACAGTAATAAAATAATATTT  793

seq1  GATGCCTATATTGGATTCAGTTATCAGTGACTTTGAGAAGGACATGTACC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTATATTGGATTCAGTTATCAGTGACTTTGAGAAGGACATGTACC  843

seq1  AAGATTATAAATTTAAGTTAAAGCGTGATGAACAATTTAGGAAGCCACAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATAAATTTAAGTTAAAGCGTGATGAACAATTTAGGAAGCCACAT  893

seq1  TACTGGAACACTTTTTAAGAAGCTGTACCAGTATCCTTATGTATTAGCAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAACACTTTTTAAGAAGCTGTACCAGTATCCTTATGTATTAGCAT  943

seq1  CATCTCATCCTTCTACATCCTAGCACTGAACTTTCTCTTAATGTATTGAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATCCTTCTACATCCTAGCACTGAACTTTCTCTTAATGTATTGAT  993

seq1  GTTCTTGAAGTAAATGCAGTTACAAAAAAAGCAAAGGTTATCATCAGGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAAGTAAATGCAGTTACAAAAAAAGCAAAGGTTATCATCAGGGG  1043

seq1  CAGAGAGAGGAAACGAATCATTATTGATTCTCTATCTCTGACCTGAGTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGGAAACGAATCATTATTGATTCTCTATCTCTGACCTGAGTCT  1093

seq1  AAGCTCAATCGTTACAATCACATTCCAGAGAGACATTTATTTGATTGTGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAATCGTTACAATCACATTCCAGAGAGACATTTATTTGATTGTGT  1143

seq1  TGTTTTCTTTAATGTATGAATTC  1165
      |||||||||||||||||||||||
seq2  TGTTTTCTTTAATGTATGAATTC  1166

seq1: chr10_64309170_64310375
seq2: B6Ng01-136D09.g_68_1252

seq1  GAATTCAACAAATTCGCTTCTAAATTGGAATAATTTTTTTTAGTCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAATTCGCTTCTAAATTGGAATAATTTTTTTTAGTCCTTCC  50

seq1  ATACTTTGTCTTAAAATACATTCTGGTTTTCCTAATTTATTTAATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGTCTTAAAATACATTCTGGTTTTCCTAATTTATTTAATTTTTT  100

seq1  CTAGACTTATCTATAATTTCTATAATGTCTACTATTAAGAACTTACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTATCTATAATTTCTATAATGTCTACTATTAAGAACTTACATCA  150

seq1  GGAAAGATTTTGGACTAGGCTACTATGATAGGAAACCAAAGCTAGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATTTTGGACTAGGCTACTATGATAGGAAACCAAAGCTAGAATAA  200

seq1  AGTTTGTGCTCCATTTTGCAAAACAAACAAGCAAACAAACAAATAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGCTCCATTTTGCAAAACAAACAAGCAAACAAACAAATAAACAA  250

seq1  ATGGACTGAAGATTTTTCACAGATGAAATTATAAGATTTTATTATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGAAGATTTTTCACAGATGAAATTATAAGATTTTATTATCATTT  300

seq1  CCAGTGCTAATCAGTTTGACTACCAACAATAGTCAACTTATGGTAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTAATCAGTTTGACTACCAACAATAGTCAACTTATGGTAAATTT  350

seq1  CTTTCCATGATGAAATGTTCCTTTGAAAGTTAGGCTCCTCCTCTTCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGATGAAATGTTCCTTTGAAAGTTAGGCTCCTCCTCTTCTGAA  400

seq1  AAACTGGGGAAATTGGAGAGAATGTGGCATAGCTTTCAAATGAATGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGGAAATTGGAGAGAATGTGGCATAGCTTTCAAATGAATGGTTC  450

seq1  CCACCTTTCAGAGAAAGACATTAATATGCTATAAAATGGACAAGCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCAGAGAAAGACATTAATATGCTATAAAATGGACAAGCTTTTA  500

seq1  AGAATATTTGTTTCTCAAAGAGGCAAAGAAATAATTTACAATCATAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTGTTTCTCAAAGAGGCAAAGAAATAATTTACAATCATAAATG  550

seq1  TAATAGAGTAGAGAGTCCCATTGGGAATGATTGAAAGTTTATTCATGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGTAGAGAGTCCCATTGGGAATGATTGAAAGTTTATTCATGCTC  600

seq1  AGGGAAGCATAAGTACATTCTAGTCATGTCCTTAGTTCAGGTTCTGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCATAAGTACATTCTAGTCATGTCCTTAGTTCAGGTTCTGACAT  650

seq1  GGTCTCCTGCATCAGGTCCTGGCATTGTATCTGTATCCACTTTTATTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTGCATCAGGTCCTGGCATTGTATCTGTATCCACTTTTATTGCC  700

seq1  TCTCATTCTCTATCTTAAACTCAAGTGATATTTCTAAAGGCACTTGATA-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTCATTCTCTATCTTAAACTCAAGTGATATTTCTAAAGGCACTTGATAT  750

seq1  TTTACCACCATACATTGAAAATAAGACTCTGGGTCTGAGTGCCATTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACCATACATTGAAAATAAGACTCTGGGTCTGAGTGCCATTTCTT  800

seq1  GTGATGTTCATATTAAATTCAGCCTACCTCTGCCATGTGTAAGGTACCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTTCATATTAAATTCAGCCTACCTCTGCCATGTGTAAGGTACCTC  850

seq1  TAGATTTGTTGCTTGCTTCTATCTTCCACATCTCAGGTCAACTGGTTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGTTGCTTGCTTCTATCTTCCACATCTCAGGTCAACTGGTTCCC  900

seq1  TCTAGCCCCACCTCTTTCT-ATATCAGCTGCTATTAGGCGTTTGACTTCC  948
      ||||||||||||||||| | |||||||||||||||||||||||||||| |
seq2  TCTAGCCCCACCTCTTTTTAATATCAGCTGCTATTAGGCGTTTGACTT-C  949

seq1  TCTCAAGCATTTATCTACCTGTGAAGGTCATAGTCACATCAGTACC-TTT  997
      |||||||||||||| |||||||||| |||||||||||||||||||| |||
seq2  TCTCAAGCATTTATTTACCTGTGAAAGTCATAGTCACATCAGTACCTTTT  999

seq1  TTTTTTTCTTCCTCACCAGTAAATACTT-ATTCTTCCATAGAATTCTACA  1046
      |||||||||||||||||||| ||||||| ||||||||||||||||||| |
seq2  TTTTTTTCTTCCTCACCAGT-AATACTTAATTCTTCCATAGAATTCTA-A  1047

seq1  TTGGCTCA-GAATTTCATATCTAAACAGCCTCACTCAATCATGCACCAGT  1095
      || ||||| |||||||||||   ||||||||| |||||||||||| ||||
seq2  TT-GCTCAGGAATTTCATATTCTAACAGCCTC-CTCAATCATGCA-CAGT  1094

seq1  GATACAAATATCTTCATAG-CATAGCATTCATTGTTAGCATGGAATTTCT  1144
      ||||| ||||||||| ||| ||||||| |||||| |||||||     |||
seq2  GATAC-AATATCTTC-TAGCCATAGCAATCATTG-TAGCATG----ATCT  1137

seq1  CATTCTGGCTTTTGAACTCTAAATTAGAGTTTACTCTATTAACCTATTAA  1194
      || ||||   |||||   || ||||| || |||| ||| ||||    |||
seq2  CA-TCTG--CTTTGA---CTTAATTA-AG-TTAC-CTA-TAAC---GTAA  1174

seq1  TACAAGGGAGCA  1206
      ||| ||||||||
seq2  TAC-AGGGAGCA  1185