BAC Information

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BAC

Clone NameB6Ng01-136F05
Chromosome10 (Build37)
Map Location 113,713,826 - 113,884,884
singlet/doubletdoublet
Overlap geneTrhde
Upstream geneLOC100042655, LOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136F05.bB6Ng01-136F05.g
ACCDH936126DH936127
length1,1721,200
definitionDH936126|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F05, 5' end.DH936127|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,713,826 - 113,714,988)(113,883,681 - 113,884,884)
sequence
gaattcaggaacaaactcaactgaactcaactgcactgcattaaatgcat
ggactgaacagattcaactccactgcagtgaactcagttgaccctctatt
ttagtactgctctcaaatagcctttctttcctgtctgttctcatgggtgt
tggacatatcctatcaaatatttctgtcaaatctttctctgatttctcat
ttttgtctgccacttgaggcttggggttcagatcttaacttttcaaatgg
cattgtttgggatgaaagttgaatgctaagggcgtgtctgtgttccagcc
agaaggattaaaagttcatggcatatctgaatttctgatggatcacaaag
agctagaaggtatttgatatgatcagaacagccatgttgccagattaaaa
ttcctctatagttttcttcttcttacttccacacagaaagctaaataggt
cttgtgctggtaaccatggctgctatggtttataaattcaacatctctgt
catttccagaggatattatttttacagcagcctttccagacctctggcta
ttcaaatctccccacctccttttctgtgatatcccaagagccttgagggg
tggagtgtatgatataggcatgctaattagggctgaactctttgaagact
cttatttttttcttcttcactttttgccagttgtgggtttctctattaat
tgccaaccacatattacattcatgtatgggaaaaataaagaataaagttt
tctaaattgaaaactaaaactagaaatttttgtacgtgaattttagcttt
tgctctatcaccaatctgctcatagacatgtaaaaataaaagatattaat
attctttatatctgttatgcaatatttatttttatatgatgttccctctc
aaacaacccattcatagacacgggagttgagaaacagaggaaggatttgt
ctctaaataaggtgtccaagaaaggtagtggcctgtagtacaatatcagt
ttggaacatacctaggatacctcttcatctttaaaattaagttggacacc
aatgggtgtgttttgacatcataggatatttttcaatttaatatttggac
atttaacttactctcccttgtcacttactcccactctcatcaagggataa
gacctttactcttaatgcttga
gaattcaatgcacctccttaattaacaaggataagatcaacattgaggcc
aaagcccatccataattgggtccaaggggatacagggcagcaaacaacag
ataatccaggcagacacagaggcatgccatacattccaaaatggtacctg
actagattttctaagcttaaagtccaggaaaccaaaattttactgtcaag
agcacctaatcagattcaatggtcattttgaataatatcaggattaacta
cagctaatgagcttttgattccttgctttcttatcacaattaccttggtg
cactgtaaggttttcttcagatacttttaagaacctgtactgtgctttgt
gaagtcattccatgacttatgacatagtaagtctgtgacttgacactcac
aattgaaattattcaaagatgggttgtcagtgattcaatatatgattaga
accatccaggttgtctaatgctcatcacaggtgccttgttccttccttgt
tctcttacccaaagccttcatcaaagtgattccatcaatttacttttaaa
attgagaaaaatcatggcttgcctattcattgttgttagttttgcatatg
cccttagcaacagatgtacaaagaaatgtgtcatttgagttatgggatgt
ttatctgctagagaaaatcttatatttccccttttccctaacaaagaggt
gctgaagtatgaaactcctaaaaaggcaaaatacactcttgtgtatgctt
atacttttttaatactagagttttgttagatccctcacttacagtatatt
aaagtgatgttcttgctgtaattttagtgctatcattccttagacaaaat
tctaagatttgcattaaagtagggagagcatattttacataggcatttat
attttaaatgcatcattaagtgaacagatttttgaaattgtgatactata
ttactgtatgaaggtgttatgttcatccttttcttcagaatactggtcta
ttggctgggccggtctaacagcttttcattgagtagctttattgatgcaa
atatacaaataatagctggttccagttgaagagatggcccagaagattaa
attgcttggtgcttgtctgaagacctgcagttcaatacagcacctggttt
gcctagtagctcacaatctacccgaacactctagactcagtgatcggagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_113713826_113714988
seq2: B6Ng01-136F05.b_41_1212

seq1  GAATTCAGGAACAAACTCAACTGAACTCAACTGCACTGCATTAAATGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAACAAACTCAACTGAACTCAACTGCACTGCATTAAATGCAT  50

seq1  GGACTGAACAGATTCAACTCCACTGCAGTGAACTCAGTTGACCCTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAACAGATTCAACTCCACTGCAGTGAACTCAGTTGACCCTCTATT  100

seq1  TTAGTACTGCTCTCAAATAGCCTTTCTTTCCTGTCTGTTCTCATGGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACTGCTCTCAAATAGCCTTTCTTTCCTGTCTGTTCTCATGGGTGT  150

seq1  TGGACATATCCTATCAAATATTTCTGTCAAATCTTTCTCTGATTTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATATCCTATCAAATATTTCTGTCAAATCTTTCTCTGATTTCTCAT  200

seq1  TTTTGTCTGCCACTTGAGGCTTGGGGTTCAGATCTTAACTTTTCAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTGCCACTTGAGGCTTGGGGTTCAGATCTTAACTTTTCAAATGG  250

seq1  CATTGTTTGGGATGAAAGTTGAATGCTAAGGGCGTGTCTGTGTTCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTGGGATGAAAGTTGAATGCTAAGGGCGTGTCTGTGTTCCAGCC  300

seq1  AGAAGGATTAAAAGTTCATGGCATATCTGAATTTCTGATGGATCACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATTAAAAGTTCATGGCATATCTGAATTTCTGATGGATCACAAAG  350

seq1  AGCTAGAAGGTATTTGATATGATCAGAACAGCCATGTTGCCAGATTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAAGGTATTTGATATGATCAGAACAGCCATGTTGCCAGATTAAAA  400

seq1  TTCCTCTATAGTTTTCTTCTTCTTACTTCCACACAGAAAGCTAAATAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTATAGTTTTCTTCTTCTTACTTCCACACAGAAAGCTAAATAGGT  450

seq1  CTTGTGCTGGTAACCATGGCTGCTATGGTTTATAAATTCAACATCTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTGGTAACCATGGCTGCTATGGTTTATAAATTCAACATCTCTGT  500

seq1  CATTTCCAGAGGATATTATTTTTACAGCAGCCTTTCCAGACCTCTGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAGAGGATATTATTTTTACAGCAGCCTTTCCAGACCTCTGGCTA  550

seq1  TTCAAATCTCCCCACCTCCTTTTCTGTGATATCCCAAGAGCCTTGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCTCCCCACCTCCTTTTCTGTGATATCCCAAGAGCCTTGAGGGG  600

seq1  TGGAGTGTATGATATAGGCATGCTAATTAGGGCTGAACTCTTTGAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTATGATATAGGCATGCTAATTAGGGCTGAACTCTTTGAAGACT  650

seq1  CTTATTTTTTTCTTCTTCAC-TTTTGCCAGTTGTGGGTTTCTCTATTAAT  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTATTTTTTTCTTCTTCACTTTTTGCCAGTTGTGGGTTTCTCTATTAAT  700

seq1  TGCCAACCACATATTACATTCATGTATGGGAAAAATAAAGAATAAAGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCACATATTACATTCATGTATGGGAAAAATAAAGAATAAAGTTT  750

seq1  TCTAAATTGAAAACTAAAACTAGAAATTTTTGTACGTGAATTTTAGCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTGAAAACTAAAACTAGAAATTTTTGTACGTGAATTTTAGCTTT  800

seq1  TGCTCTATCACCAATCTGCTCATAGACATGTAAAAATAAAAGAATATTAA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCTCTATCACCAATCTGCTCATAGACATGTAAAAATAAAAG-ATATTAA  849

seq1  TATTCTTTATATCTGTTATGCAATATTTA-TTTTATATGATGTT-CCTCT  897
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  TATTCTTTATATCTGTTATGCAATATTTATTTTTATATGATGTTCCCTCT  899

seq1  CAAACAACCCATTCATAGACACGGGAGTTGAGATACAGAGGAAGAATTTG  947
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  CAAACAACCCATTCATAGACACGGGAGTTGAGAAACAGAGGAAGGATTTG  949

seq1  TC-CTAAATAAGGTGTCAAGAAAAGTTAGTGG-CTGTAGTACAATATCAG  995
      || |||||||||||||| |  |||| |||||| |||||||||||||||||
seq2  TCTCTAAATAAGGTGTCCAAGAAAGGTAGTGGCCTGTAGTACAATATCAG  999

seq1  TTTGGAACATACTAAGAATATCATCTCATCTTTAAAATTAAGTTGTACA-  1044
      ||||||||||||  || ||| |   |||||||||||||||||||| ||| 
seq2  TTTGGAACATACCTAGGATACCTCTTCATCTTTAAAATTAAGTTGGACAC  1049

seq1  CAAT-GGTGTGTTTTGACATTATAGGTATA-TTTTCAATTAAATATTT-G  1091
      |||| ||||||||||||||| ||||| ||| ||||||||| ||||||| |
seq2  CAATGGGTGTGTTTTGACATCATAGG-ATATTTTTCAATTTAATATTTGG  1098

seq1  ACATTTTATCATACT-TCCCTTGTCACTTACTCCAACTCATA-CAAGGGA  1139
      ||| |||| | |||| |||||||||||||||||| ||||  | |||||||
seq2  ACA-TTTAACTTACTCTCCCTTGTCACTTACTCCCACTCTCATCAAGGGA  1147

seq1  TAAAGACACTTACTCT--ATGCTTGA  1163
      | |||||  |||||||  ||||||||
seq2  T-AAGACCTTTACTCTTAATGCTTGA  1172

seq1: chr10_113883681_113884884
seq2: B6Ng01-136F05.g_67_1266 (reverse)

seq1  CCTCCGATCAACTCTAGCTAGAGTTGTCGG--TGATTGTGAGCTACCTAA  48
      ||||||||| |||    |||||||  ||||   |||||||||||| ||| 
seq2  CCTCCGATC-ACTGAGTCTAGAGTGTTCGGGTAGATTGTGAGCTA-CTAG  48

seq1  GCCAAATACAGGTGCTGGTAATTGAACTGCAGTCCTTCAGACAAGCACCA  98
      ||  ||  |||||||||   ||||||||||||  ||||||||||||||||
seq2  GC--AAACCAGGTGCTG--TATTGAACTGCAGGTCTTCAGACAAGCACCA  94

seq1  AGCAATTTTAATC-TCTGGGCAATTCTCTTCAACTGGAA-CAACTAATAT  146
      ||||| ||||||| ||||||| | ||||||||||||||| || ||| |||
seq2  AGCAA-TTTAATCTTCTGGGCCA-TCTCTTCAACTGGAACCAGCTATTAT  142

seq1  TTGTATATTTTGCATCAATAAAGGCTACTCAATGAAAAGCTGTTAGACCG  196
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTATA-TTTGCATCAATAAA-GCTACTCAATGAAAAGCTGTTAGACCG  190

seq1  GCCCAGCCAATAGACCAGTATTCTGGAAGAGAGGATGAACATAACACTTT  246
      ||||||||||||||||||||||||| |  | |||||||||||||||| ||
seq2  GCCCAGCCAATAGACCAGTATTCTGAAGAAAAGGATGAACATAACACCTT  240

seq1  CATACAGTAATATAGTATCACAATTTCAAAAATCTGTTCACCTAATGATG  296
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATACAGTAATATAGTATCACAATTTCAAAAATCTGTTCACTTAATGATG  290

seq1  CATTT-AAATATCAATGCCTATGTAAAATATGCTCTCCCTTACTTTAATG  345
      ||||| |||||| |||||||||||||||||||||||||| ||||||||||
seq2  CATTTAAAATATAAATGCCTATGTAAAATATGCTCTCCC-TACTTTAATG  339

seq1  C-AATCTTAGAATTTTGTCTAAGGAATGATAGCACTAAAATTACAGCAAG  394
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTAGAATTTTGTCTAAGGAATGATAGCACTAAAATTACAGCAAG  389

seq1  AACATCACTTAAATATACTGTAAGTGAGGGATCTAACAAAACTCTAGTAT  444
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACATCACTTTAATATACTGTAAGTGAGGGATCTAACAAAACTCTAGTAT  439

seq1  T-AAAAAGTATAAGCATACACAAGAGTGTATTTTGCCTTTTTAGGAGTTT  493
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGTATAAGCATACACAAGAGTGTATTTTGCCTTTTTAGGAGTTT  489

seq1  CATACTTCAGCACCTCTTTGTTAGGGAAAAGGGGAAATATAAGATTTTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTCAGCACCTCTTTGTTAGGGAAAAGGGGAAATATAAGATTTTCT  539

seq1  CTAGCAGATAAACATCCCATAACTCAAATGACACATTTCTTTGTACATCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGATAAACATCCCATAACTCAAATGACACATTTCTTTGTACATCT  589

seq1  GTTGCTAAGGGCATATGCAAAACTAACAACAATGAATAGGCAAGCCATGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAAGGGCATATGCAAAACTAACAACAATGAATAGGCAAGCCATGA  639

seq1  TTTTTCTCAATTTTAAAAGTAAATTGATGGAATCACTTTGATGAAGGCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAATTTTAAAAGTAAATTGATGGAATCACTTTGATGAAGGCTT  689

seq1  TGGGTAAGAGAACAAGGAAGGAACAAGGCACCTGTGATGAGCATTAGACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAGAGAACAAGGAAGGAACAAGGCACCTGTGATGAGCATTAGACA  739

seq1  ACCTGGATGGTTCTAATCATATATTGAATCACTGACAACCCATCTTTGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATGGTTCTAATCATATATTGAATCACTGACAACCCATCTTTGAA  789

seq1  TAATTTCAATTGTGAGTGTCAAGTCACAGACTTACTATGTCATAAGTCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAATTGTGAGTGTCAAGTCACAGACTTACTATGTCATAAGTCAT  839

seq1  GGAATGACTTCACAAAGCACAGTACAGGTTCTTAAAAGTATCTGAAGAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGACTTCACAAAGCACAGTACAGGTTCTTAAAAGTATCTGAAGAAA  889

seq1  ACCTTACAGTGCACCAAGGTAATTGTGATAAGAAAGCAAGGAATCAAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACAGTGCACCAAGGTAATTGTGATAAGAAAGCAAGGAATCAAAAG  939

seq1  CTCATTAGCTGTAGTTAATCCTGATATTATTCAAAATGACCATTGAATCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGCTGTAGTTAATCCTGATATTATTCAAAATGACCATTGAATCT  989

seq1  GATTAGGTGCTCTTGACAGTAAAATTTTGGTTTCCTGGACTTTAAGCTTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGTGCTCTTGACAGTAAAATTTTGGTTTCCTGGACTTTAAGCTTA  1039

seq1  GAAAATCTAGTCAGGTACCATTTTGGAATGTATGGCATGCCTCTGTGTCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTAGTCAGGTACCATTTTGGAATGTATGGCATGCCTCTGTGTCT  1089

seq1  GCCTGGATTATCTGTTGTTTGCTGCCCTGTATCCCCTTGGACCCAATTAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGATTATCTGTTGTTTGCTGCCCTGTATCCCCTTGGACCCAATTAT  1139

seq1  GGATGGGCTTTGGCCTCAATGTTGATCTTATCCTTGTTAATTAAGGAGGT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGCTTTGGCCTCAATGTTGATCTTATCCTTGTTAATTAAGGAGGT  1189

seq1  GCATTGAATTC  1204
      |||||||||||
seq2  GCATTGAATTC  1200