BAC Information

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BAC

Clone NameB6Ng01-137N22
Chromosome14 (Build37)10 (Build37)
Map Location 23,442,216 - 23,443,317104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap gene1700112E06Rik
Upstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075, EG435392
Downstream geneLOC665068, Kcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137N22.bB6Ng01-137N22.g
ACCDH937273DH937274
length1,078978
definitionDH937273|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N22, 5' end.DH937274|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,442,216 - 23,443,317)(104,053,903 - 104,054,363)
sequence
gaattcacatcatcggattggattcacatcactttaccatcagagtaggt
ctatatgttgggaagtgggacatagaggagaaagggaattggtaaataaa
agagaagcctggtggttagggaagatgaataaatgtcttctctcgattcc
tcggacttgtgatttcaaggccatgaacatggagaactgcttaaaaagct
gagtcaactgtctttgacccagagctccctctggatggcctgtgtcttgg
taaccctgtagttggcaagagttctcagggagcctgcttcttactaaatc
catttcttcagcatcttcccaagtcaagtcaactgaagagtagctctgtt
tatatttattttgctatttgctcttgtgtctgtgcaggtacacatgcata
tgcaagccacagggtgacatttgctctcttccttagtcacttcctacctt
aaatgttgaggtagcttctttcactgagtctgaaactcatcagtttagct
aggttatctgagcagcaagcttcagggtcctcctgtctcttcttccataa
caatcaagtcgcagttgtgtgctgccatgcctggcttgggtgctgccatg
cctggcttgggtgctgccatgcctggcttgggtgctgccatgcctggctt
gggtgctgccatgcctggcttgggtgctgccatgcctggcttgggtgctg
ccatgcctggcttgggtgctgccatgcctggcttgggtgctgccatgcct
ggcttgggtgctgccatgcctggcttgggtgctgccatgcctggcttggg
tgctgccatgcttggctttttgcatgggtgctgtacatccaaatccaggt
cctttggcttgtatagcacacactttcctgatccgtctcccctgagggtt
ccttagattaaataagtcagatgcaggatgttcacattgtctttgggagg
tatctagtatacattggaaataatgaaatagttttgcagaaaagagctgt
cagacatgatctaccacatctgagcaatagcatctttctgctatgtctgc
tagctgacatctgaaaagaaatgctcta
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccacttg
tcttataatagccagaagctggaaagaacccagatgcccctcaacagagg
aatggatacagaaaatgtggtacatctacacaatggagtactactcagct
attaaaaagaatgaatttatgaaattcctagccaaatggatggacctgga
ggacatcatcctgagtgaggtaacacattcacaaaggaactcacacaata
tgtactcactgataagtggatattagcccaaaacctaggatacccaagat
ataagatacaatttgctaaacacatgaaactcaagaaaaatgaagactga
agtgtggacactatgcccctccttagaagtgggaacaaaacaccctggga
aggagttacagagacaaagtttggagctgagatgaaaggatggtccatgt
agagactgccatatccagggatccaccccataatcagcatccaaacgctg
acaccattgcatacactagctagattttatcgaaaggacccagatgtagc
tgtctcttgtgagactatgcccggggcctagcaacacagaagtggatgct
cacagtcagctaatggatggatcacagggctcccaatggaggagctagag
aagtactcaggagctaaagggatctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_23442216_23443317
seq2: B6Ng01-137N22.b_47_1124

seq1  GAATTCACATCATCGGATTGGATTCACATCACTTTACCATCAGAGTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCATCGGATTGGATTCACATCACTTTACCATCAGAGTAGGT  50

seq1  CTATATGTTGGGAAGTGGGACATAGAGGAGAAAGGGAATTGGTAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTGGGAAGTGGGACATAGAGGAGAAAGGGAATTGGTAAATAAA  100

seq1  AGAGAAGCCTGGTGGTTAGGGAAGATGAATAAATGTCTTCTCTCGATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCCTGGTGGTTAGGGAAGATGAATAAATGTCTTCTCTCGATTCC  150

seq1  TCGGACTTGTGATTTCAAGGCCATGAACATGGAGAACTGCTTAAAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACTTGTGATTTCAAGGCCATGAACATGGAGAACTGCTTAAAAAGCT  200

seq1  GAGTCAACTGTCTTTGACCCAGAGCTCCCTCTGGATGGCCTGTGTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACTGTCTTTGACCCAGAGCTCCCTCTGGATGGCCTGTGTCTTGG  250

seq1  TAACCCTGTAGTTGGCAAGAGTTCTCAGGGAGCCTGCTTCTTACTAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGTAGTTGGCAAGAGTTCTCAGGGAGCCTGCTTCTTACTAAATC  300

seq1  CATTTCTTCAGCATCTTCCCAAGTCAAGTCAACTGAAGAGTAGCTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTCAGCATCTTCCCAAGTCAAGTCAACTGAAGAGTAGCTCTGTT  350

seq1  TATATTTATTTTGCTATTTGCTCTTGTGTCTGTGCAGGTACACATGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATTTTGCTATTTGCTCTTGTGTCTGTGCAGGTACACATGCATA  400

seq1  TGCAAGCCACAGGGTGACATTTGCTCTCTTCCTTAGTCACTTCCTACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCACAGGGTGACATTTGCTCTCTTCCTTAGTCACTTCCTACCTT  450

seq1  AAATGTTGAGGTAGCTTCTTTCACTGAGTCTGAAACTCATCAGTTTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGAGGTAGCTTCTTTCACTGAGTCTGAAACTCATCAGTTTAGCT  500

seq1  AGGTTATCTGAGCAGCAAGCTTCAGGGTCCTCCTGTCTCTTCTTCCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCTGAGCAGCAAGCTTCAGGGTCCTCCTGTCTCTTCTTCCATAA  550

seq1  CAATCAAGTCGCAGTTGTGTGCTGCCATGCCTGGCTTGGGTGCTGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGTCGCAGTTGTGTGCTGCCATGCCTGGCTTGGGTGCTGCCATG  600

seq1  CCTGGCTTGGGTGCTGCCATGCCTGGCTTGGGTGCTGCCATGCCTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTGGGTGCTGCCATGCCTGGCTTGGGTGCTGCCATGCCTGGCTT  650

seq1  GGGTGCTGCCATGCCTGGCTTGGGTGCTGCCATGCCTGGCTTGGGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGCCATGCCTGGCTTGGGTGCTGCCATGCCTGGCTTGGGTGCTG  700

seq1  CCATGCCTGGCTTGGGTGCTGCCATGCCTGGCTTGGGTGCTGCCATGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGGCTTGGGTGCTGCCATGCCTGGCTTGGGTGCTGCCATGCCT  750

seq1  GGCTTGGGTGCTGCCATGCCTGGCTTGGGTGCTGCCATGCCTGGCTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGTGCTGCCATGCCTGGCTTGGGTGCTGCCATGCCTGGCTTGGG  800

seq1  TGCTGCCATGCTTGGCTTTTTGCATGGGTGCTGTACATCCAAATCCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCATGCTTGGCTTTTTGCATGGGTGCTGTACATCCAAATCCAGGT  850

seq1  CCTTTGGCTTGTATAGCACACACTTTCCTGATCCGTCTCCCCTGAGGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCTTGTATAGCACACACTTTCCTGATCCGTCTCCCCTGAGGGTT  900

seq1  CCTTAGATTAAATAAGGTCAGATGCAGGATGTTCCACATTGTCTTTGGGA  950
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  CCTTAGATTAAATAA-GTCAGATGCAGGATGTT-CACATTGTCTTTGGGA  948

seq1  GGTATCTAGTATACATTGGAAAATTAATGAAAATAAGTTTTGCAAGAAAA  1000
      ||||||||||||||||||||||  ||||||||   |||||||| ||||||
seq2  GGTATCTAGTATACATTGGAAA--TAATGAAA--TAGTTTTGC-AGAAAA  993

seq1  GAAGCTGTCAGGACCATGATTCCTACCCACATCTGAGCACATAGCATCCT  1050
      | |||||||||   ||||||  ||| ||||||||||||| ||||||| ||
seq2  G-AGCTGTCAG--ACATGAT--CTA-CCACATCTGAGCA-ATAGCAT-CT  1035

seq1  TTCTGCTAATGTCTGCTAGCCTGAACATTCCTGAGAAAGGAGAAATGCTC  1100
      ||||||| ||||||||||| ||| ||||  |||| |    ||||||||||
seq2  TTCTGCT-ATGTCTGCTAG-CTG-ACAT--CTGAAA----AGAAATGCTC  1076

seq1  TA  1102
      ||
seq2  TA  1078

seq1: chr10_104053903_104054363
seq2: B6Ng01-137N22.g_67_522 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      ||||   |               |||||||||||||||||||||||| ||
seq2  ATAAGACA---------------AGTGGAGCATGTGTCCTTCTTACCAGT  135

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  185

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  235

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  285

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  335

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  385

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  435

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  456