BAC Information

Click to search

BAC

Clone NameB6Ng01-139L04
Chromosome10 (Build37)
Map Location 42,390,631 - 42,554,665
singlet/doubletdoublet
Overlap geneOstm1, Sec63
Upstream geneEG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389
Downstream geneScml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139L04.bB6Ng01-139L04.g
ACCDH938618DH938619
length1,161649
definitionDH938618|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L04, 5' end.DH938619|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,390,631 - 42,391,781)(42,554,019 - 42,554,665)
sequence
gaattcttctgacaaatagagattccccacagatactttaaagaacagcc
aagttatactcatgcaagaatttatcaaggcctaggaaatagggggtttg
tggtattgcattattcatgagaaggtctgctagagcagaaccccctagtg
ctagctttcacaaggctcaaaggagtagcacaaattgtgactagggtgtg
aaatccttacctgtcattagctgaccctaggcagggctgttttatcttta
ctgtaaatattacctggttcttgtaagtccttttgaagtcattcctctgt
tttgtgtcagataacttcaatgtattttgcctgccgtgacattctacccc
tttgttttctgtattatataagactggtgttcactttgtgaaaatacact
cagattctacacactctctcgtgtctcttctgtttgtcattcgctgactc
cttcgcccacttgccaccagagacccgttccacacagataggagacccaa
aaagggaatagtctgcggcaacatcacagatgacaacccaagagaagttg
tgtcacagaaccccacttttacttaaagtttgcttcctggaaactctgac
atcccccaatatcacttgcagtagcggggtttagagaaagagcaattagg
agtaatgctggactcacaatatggggccctgtgacccaaccctccgtcct
tctattagagagcatcactagctccattaccatccccacaggcctagcta
tcactacactgtttagctggactagttgccatggctacagagccactgtc
taatccaagatggtagtcatgttatgccccaaggaaaaatcgatactata
gcattaatacatttataactcacaaattcagcatgggcatggagaaaaag
aaacttggctgtgcacaccatgtcgggatgagctgcagctgcaaaatctc
caaagcaatgggggtctctcggtggtctgaaagctcctggtgataagcca
gaaccagccttcttcaatatgagctgtgtgtcttgcatatttgttacagt
aacagatgttagacatgctaagagagcggccatagactgaacagactagt
caccagtgtgagacttcccaccaagcaccctgaattagaaagccagggtg
catcatctgtt
gaattctactccacccttagtactgctaaacttaaaactccatgtgaaaa
atgcgctcctgaggtgtctgtcactcctgacatttggtgggataccctgt
cattaagtcagaacacttgaaagacacaggggcttgtcttgtgcaaagaa
atactgcagtagatcataacaccagtctcacccccactctcaaaggcact
tctcagataatcacattaatcctgataatttccatcataatagatgcaga
cctgtgaataggggtggggaggtggggcaggcgctcctagggatcgtggg
aaaacttacccacaagttctgaagccggagctttgagccaaagagggtgc
cttgaagcctgtcacatgggcatttctcctgccctctccattctccttgc
cactgccctgtgtgtttaatgtgttgtcaagaggaacagtaagcttttga
agggaagtgactagagtcccaagaatgtggcagagaatcaaggaattaag
aagctggagaacctttgcatgtgattgtgaagacagacaagttaacagga
tggggatgaaggttggcagtgcatggcattgaggaggtacggtccccccc
atgcctcttactggatgccatattccccctgagaaattctccaacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42390631_42391781
seq2: B6Ng01-139L04.b_70_1209

seq1  ATTCCCCACAGATACTTTAAAGAACAGCCAAGTTATACTCATGCAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCACAGATACTTTAAAGAACAGCCAAGTTATACTCATGCAAGAAT  50

seq1  TTATCAAGGCCTAGGAAATAGGGGGTTTGTGGTATTGCATTATTCATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGGCCTAGGAAATAGGGGGTTTGTGGTATTGCATTATTCATGAG  100

seq1  AAGGTCTGCTAGAGCAGAACCCCCTAGTGCTAGCTTTCACAAGGCTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGCTAGAGCAGAACCCCCTAGTGCTAGCTTTCACAAGGCTCAAA  150

seq1  GGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAGC  200

seq1  TGACCCTAGGCAGGGCTGTTTTATCTTTACTGTAAATATTACCTGGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTAGGCAGGGCTGTTTTATCTTTACTGTAAATATTACCTGGTTCT  250

seq1  TGTAAGTCCTTTTGAAGTCATTCCTCTGTTTTGTGTCAGATAACTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTCCTTTTGAAGTCATTCCTCTGTTTTGTGTCAGATAACTTCAAT  300

seq1  GTATTTTGCCTGCCGTGACATTCTACCCCTTTGTTTTCTGTATTATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGCCTGCCGTGACATTCTACCCCTTTGTTTTCTGTATTATATAA  350

seq1  GACTGGTGTTCACTTTGTGAAAATACACTCAGATTCTACACACTCTCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGTTCACTTTGTGAAAATACACTCAGATTCTACACACTCTCTCG  400

seq1  TGTCTCTTCTGTTTGTCATTCGCTGACTCCTTCGCCCACTTGCCACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCTGTTTGTCATTCGCTGACTCCTTCGCCCACTTGCCACCAGA  450

seq1  GACCCGTTCCACACAGATAGGAGACCCAAAAAGGGAATAGTCTGCGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGTTCCACACAGATAGGAGACCCAAAAAGGGAATAGTCTGCGGCAA  500

seq1  CATCACAGATGACAACCCAAGAGAAGTTGTGTCACAGAACCCCACTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGATGACAACCCAAGAGAAGTTGTGTCACAGAACCCCACTTTTA  550

seq1  CTTAAAGTTTGCTTCCTGGAAACTCTGACATCCCCCAATATCACTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTTGCTTCCTGGAAACTCTGACATCCCCCAATATCACTTGCAG  600

seq1  TAGCGGGGTTTAGAGAAAGAGCAATTAGGAGTAATGCTGGACTCACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGGGTTTAGAGAAAGAGCAATTAGGAGTAATGCTGGACTCACAATA  650

seq1  TGGGGCCCTGTGACCCAACCCTCCGTCCTTCTATTAGAGAGCATCACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCCTGTGACCCAACCCTCCGTCCTTCTATTAGAGAGCATCACTAG  700

seq1  CTCCATTACCATCCCCACAGGCCTAGCTATCACTACACTGTTTAGCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTACCATCCCCACAGGCCTAGCTATCACTACACTGTTTAGCTGGA  750

seq1  CTAGTTGCCATGGCTACAGAGCCACTGTCTAATCCAAGATGGTAGTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGCCATGGCTACAGAGCCACTGTCTAATCCAAGATGGTAGTCATG  800

seq1  TTATGCCCCAAGGAAAAATCGATACTATAGCATTAATACATTTATAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCCCAAGGAAAAATCGATACTATAGCATTAATACATTTATAACTC  850

seq1  ACAAATTCAGCATGGGCATGGAGAAAAAGAAACTTGGCTGTGCACACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAGCATGGGCATGGAGAAAAAGAAACTTGGCTGTGCACACCAT  900

seq1  GTCGGGATGAGCTGCAGCTGCCACAATCTCCAAAGCAAT-GGGGTCTCTC  949
      |||||||||||||||||||| || ||||||||||||||| ||||||||||
seq2  GTCGGGATGAGCTGCAGCTG-CAAAATCTCCAAAGCAATGGGGGTCTCTC  949

seq1  GGTGGTCTGAAAGCTCCCTGGTGATAAGCCAGAACAAGCCTTC-TCAATA  998
      ||||||||||||||| ||||||||||||||||||| ||||||| ||||||
seq2  GGTGGTCTGAAAGCT-CCTGGTGATAAGCCAGAACCAGCCTTCTTCAATA  998

seq1  TGAGCTGGTGTGTCTTGCATATTTGTTACAGTAACAGATGTAGAACATTG  1048
      |||||| ||||||||||||||||||||||||||||||||||   ||| ||
seq2  TGAGCT-GTGTGTCTTGCATATTTGTTACAGTAACAGATGTTAGACA-TG  1046

seq1  CTACAGAGAAGCGGCCATTAGACTGAACCAGACTAAGTCACACAGTGTGA  1098
      ||| |||| |||||||| ||||||||| |||||| |||||| ||||||||
seq2  CTA-AGAG-AGCGGCCA-TAGACTGAA-CAGACT-AGTCAC-CAGTGTGA  1090

seq1  GACTTCCCACC-AGCACCCCTGGATTTAGAAAAGCCAGGGTGCACTCATC  1147
      ||||||||||| |||||||   || |||| |||||||||||||| |||||
seq2  GACTTCCCACCAAGCACCC--TGAATTAG-AAAGCCAGGGTGCA-TCATC  1136

seq1  TGTT  1151
      ||||
seq2  TGTT  1140

seq1: chr10_42554019_42554665
seq2: B6Ng01-139L04.g_69_717 (reverse)

seq1  ACAGGTTGGAGGATTTCTCA-GGGGAATATGGCATCCAGTAAGAGGCCT-  48
      ||||||||||| |||||||| |||||||||||||||||||||||||| | 
seq2  ACAGGTTGGAGAATTTCTCAGGGGGAATATGGCATCCAGTAAGAGGCATG  50

seq1  GGGGTGACCGTACCTCCTCATTGCCATGCACTGCCAACCTTCATCCCCAT  98
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGGGGACCGTACCTCCTCAATGCCATGCACTGCCAACCTTCATCCCCAT  100

seq1  CCTGTTAACTTGTCTGTCTTCACAATCACATGCAAAGGTTCTCCAGCTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAACTTGTCTGTCTTCACAATCACATGCAAAGGTTCTCCAGCTTC  150

seq1  TTAATTCCTTGATTCTCTGCCACATTCTTGGGACTCTAGTCACTTCCCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCTTGATTCTCTGCCACATTCTTGGGACTCTAGTCACTTCCCTT  200

seq1  CAAAAGCTTACTGTTCCTCTTGACAACACATTAAACACACAGGGCAGTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTTACTGTTCCTCTTGACAACACATTAAACACACAGGGCAGTGG  250

seq1  CAAGGAGAATGGAGAGGGCAGGAGAAATGCCCATGTGACAGGCTTCAAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGAATGGAGAGGGCAGGAGAAATGCCCATGTGACAGGCTTCAAGG  300

seq1  CACCCTCTTTGGCTCAAAGCTCCGGCTTCAGAACTTGTGGGTAAGTTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTTTGGCTCAAAGCTCCGGCTTCAGAACTTGTGGGTAAGTTTTC  350

seq1  CCACGATCCCTAGGAGCGCCTGCCCCACCTCCCCACCCCTATTCACAGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGATCCCTAGGAGCGCCTGCCCCACCTCCCCACCCCTATTCACAGGT  400

seq1  CTGCATCTATTATGATGGAAATTATCAGGATTAATGTGATTATCTGAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTATTATGATGGAAATTATCAGGATTAATGTGATTATCTGAGAA  450

seq1  GTGCCTTTGAGAGTGGGGGTGAGACTGGTGTTATGATCTACTGCAGTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTGAGAGTGGGGGTGAGACTGGTGTTATGATCTACTGCAGTATT  500

seq1  TCTTTGCACAAGACAAGCCCCTGTGTCTTTCAAGTGTTCTGACTTAATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCACAAGACAAGCCCCTGTGTCTTTCAAGTGTTCTGACTTAATGA  550

seq1  CAGGGTATCCCACCAAATGTCAGGAGTGACAGACACCTCAGGAGCGCATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATCCCACCAAATGTCAGGAGTGACAGACACCTCAGGAGCGCATT  600

seq1  TTTCACATGGAGTTTTAAGTTTAGCAGTACTAAGGGTGGAGTAGAATTC  647
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATGGAGTTTTAAGTTTAGCAGTACTAAGGGTGGAGTAGAATTC  649