BAC Information

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BAC

Clone NameB6Ng01-139P11
Chromosome10 (Build37)
Map Location 100,002,797 - 100,131,066
singlet/doubletdoublet
Overlap gene4930430F08Rik, 1700017N19Rik
Upstream geneLOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139P11.bB6Ng01-139P11.g
ACCDH938818DH938819
length1,0921,132
definitionDH938818|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P11, 5' end.DH938819|Mus musculus domesticus DNA, BAC clone: B6Ng01-139P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,129,972 - 100,131,066)(100,002,797 - 100,003,938)
sequence
gaattcattacatgatgtataactaattaggattactttttatgaaaatt
ttgcaaacaggagtctagcatggctgtcctctgagagtctgaacccagca
attgactctgaaagatacagacacccacagtctaatagtggatggagttt
ggggcctcttatgaaagaataagaggaaagattacaggcctggaggagat
agaaactccacaggaagatgaacagagtcaagtaacctggactgttgggg
atctcagagtctgaaccactagccaaagagcatacacaggctagacctag
acctctccacacatgaagctaatgggaagcttgaccttcacatgggtccc
gaacaactggaccagggactgttccaaaagctgttgcctgtgcatgggat
atgttattctagctgggcagccttgtctggcctcagtgtgagaggatgtg
gttagcttcatagacttgatgtgccagagtagggagatgcccatttggac
tccactcactcagaggagaaaaggaagagggaggggggaaaagattgtga
gagggactgtgagcaggatgtaaagtaaataattaattagttagttagtt
aatcaatttaaaacaataacagctagtggtaaaatagaacaattaaaaaa
gaaaaatttaaataaatgaataattaagaaaatacaactcaccaaaatta
atgataaatgatagaatgtgtagaaagaaaattctctcatagaacagcaa
ggagaggcaggttcagcagggagaggcatttgagtacaggtttgacaact
tgaatttagattcccaaatcccataagatatctagagaaagacaaacata
tctggaaataaacacacatgcacacacacacacacacacactcttaaata
agtatgataattataacttaattactaaaatgctaaacataagttccaga
tggacaaacaagaaaaaaaaaattaaaatgtaacttatctattctagacc
acaataacaagaagaaaatattcgaatattttttgggctgtaaggaatcc
aattgcttatttgaacaaaggacctttaggaatattagccag
gaattcaatatattttgaactttaggatgtatgctttatgtgaattgtca
tgagtttctttgtttaaagataagtgaaatttagtttactaatttttata
cagttaaaagaagatttaatattgttttctccatattacagtacaatttt
taaagcatattatttctccatagtttgaagactctacaggatcaatgcca
gaccccagcttgcctcttccaaaccaacttgaaattgctctaagaaaaat
taaggagaatattcaagtaattcttaaaacacaagcaacttgcaagtcac
tagaagaggtaattggaataatttgcattttgattagtatattactggga
atgtttttagaatttttaaaatatttatttacgttaattaattaaagtgg
cagagttttgctaattcctctctttattcttatatactatttctaatggc
tgataatagtccatgtagttaatttgaatttataattcatttgtttactt
cattctactttgagacatactaaataggtaataaaagttatttaattgaa
gctttataaacaatatattgccttttgttaactactattttcattgttac
ttatttttgtcacttattttacattatatgttatatatctttgctcattt
tctttgtgagtaaaaaaagttgaagcaaatgaaattatttaatctatgaa
ctgaatttcattaattgttggcaaatcagctcattaaattattcataaag
taatataaactgaatatcacttaaatttttagtttccacctaaacatatt
aattacaagtacatttacaaagaatttatcatatacaattttggcttttt
gatcagttcaggaaaactaatttaaaatttttggtttatatgagctacca
ctaattcatgtgttttaaaatatccgtctaatcttactgaagatgaaact
tctctgctttggcttggtaaacttccaatctcaacacatgatcactggcc
tgtgcccctgaaatcccaactgtgtctccagtgctctgcctagtgctctg
tgacatcagaggggtgatgggactgcactttcttccattaccaccaacca
ctcatgttaggttaactgcaggattaaagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100129972_100131066
seq2: B6Ng01-139P11.b_45_1136 (reverse)

seq1  CTTGCTAATTATCCCTAAAGGTCCTTTGTTCAAATAAAGCAATTGATTTC  50
      || ||||| ||| |||||||||||||||||||||| |||||||||  |||
seq2  CTGGCTAA-TATTCCTAAAGGTCCTTTGTTCAAAT-AAGCAATTGGATTC  48

seq1  CTTACAGCTCAGAAAATATTCGAATATTTTCTTCTTGTTATTGTGGTCTA  100
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGCCCAAAAAATATTCGAATATTTTCTTCTTGTTATTGTGGTCTA  98

seq1  GAATAGATTAAGTTACATTTTAATTTTTTTTTTTCTTGTTTGTCCATCTG  150
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  GAATAGA-TAAGTTACATTTTAA-TTTTTTTTTTCTTGTTTGTCCATCTG  146

seq1  GAACTTATGTTTAGCATTTTAGTAATTAAGTTATAATTATCATACTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTATGTTTAGCATTTTAGTAATTAAGTTATAATTATCATACTTATT  196

seq1  TAAGAGTGTGTGTGTGTGTGTGTGTGCATGTGTGTTTATTTCCAGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGTGTGTGTGTGTGTGTGTGCATGTGTGTTTATTTCCAGATATG  246

seq1  TTTGTCTTTCTCTAGATATCTTATGGGATTTGGGAATCT-AATTCAAGTT  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTGTCTTTCTCTAGATATCTTATGGGATTTGGGAATCTAAATTCAAGTT  296

seq1  GTCAAACCTGTACTCAAATGCCTCTCCCTGCTGAACCTGCCTCTCCTTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACCTGTACTCAAATGCCTCTCCCTGCTGAACCTGCCTCTCCTTGC  346

seq1  TGTTCTATGAGAGAATTTTCTTTCTACACATTCTATCATTTATCATTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATGAGAGAATTTTCTTTCTACACATTCTATCATTTATCATTAAT  396

seq1  TTTGGTGAGTTGTATTTTCTTAATTATTCATTTATTTAAATTTTTCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGAGTTGTATTTTCTTAATTATTCATTTATTTAAATTTTTCTTTT  446

seq1  TTAATTGTTCTATTTTACCACTAGCTGTTATTGTTTTAAATTGATTAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTTCTATTTTACCACTAGCTGTTATTGTTTTAAATTGATTAACT  496

seq1  AACTAACTAATTAATTATTTACTTTACATCCTGCTCACAGTCCCTCTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTAATTAATTATTTACTTTACATCCTGCTCACAGTCCCTCTCAC  546

seq1  AATCTTTTCCCCCCTCCCTCTTCCTTTTCTCCTCTGAGTGAGTGGAGTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTCCCCCCTCCCTCTTCCTTTTCTCCTCTGAGTGAGTGGAGTCC  596

seq1  AAATGGGCATCTCCCTACTCTGGCACATCAAGTCTATGAAGCTAACCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCATCTCCCTACTCTGGCACATCAAGTCTATGAAGCTAACCACA  646

seq1  TCCTCTCACACTGAGGCCAGACAAGGCTGCCCAGCTAGAATAACATATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCACACTGAGGCCAGACAAGGCTGCCCAGCTAGAATAACATATCC  696

seq1  CATGCACAGGCAACAGCTTTTGGAACAGTCCCTGGTCCAGTTGTTCGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAGGCAACAGCTTTTGGAACAGTCCCTGGTCCAGTTGTTCGGGA  746

seq1  CCCATGTGAAGGTCAAGCTTCCCATTAGCTTCATGTGTGGAGAGGTCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGAAGGTCAAGCTTCCCATTAGCTTCATGTGTGGAGAGGTCTAG  796

seq1  GTCTAGCCTGTGTATGCTCTTTGGCTAGTGGTTCAGACTCTGAGATCCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCCTGTGTATGCTCTTTGGCTAGTGGTTCAGACTCTGAGATCCCC  846

seq1  AACAGTCCAGGTTACTTGACTCTGTTCATCTTCCTGTGGAGTTTCTATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCAGGTTACTTGACTCTGTTCATCTTCCTGTGGAGTTTCTATCT  896

seq1  CCTCCAGGCCTGTAATCTTTCCTCTTATTCTTTCATAAGAGGCCCCAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGCCTGTAATCTTTCCTCTTATTCTTTCATAAGAGGCCCCAAAC  946

seq1  TCCATCCACTATTAGACTGTGGGTGTCTGTATCTTTCAGAGTCAATTGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCACTATTAGACTGTGGGTGTCTGTATCTTTCAGAGTCAATTGCT  996

seq1  GGGTTCAGACTCTCAGAGGACAGCCATGCTAGACTCCTGTTTGCAAAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGACTCTCAGAGGACAGCCATGCTAGACTCCTGTTTGCAAAATT  1046

seq1  TTCATAAAAAGTAATCCTAATTAGTTATACATCATGTAATGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAAAGTAATCCTAATTAGTTATACATCATGTAATGAATTC  1092

seq1: chr10_100002797_100003938
seq2: B6Ng01-139P11.g_69_1200

seq1  GAATTCAATATATTTTGAACTTTAGGATGTATGCTTTATGTGAATTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATATTTTGAACTTTAGGATGTATGCTTTATGTGAATTGTCA  50

seq1  TGAGTTTCTTTGTTTAAAGATAAGTGAAATTTAGTTTACTAATTTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCTTTGTTTAAAGATAAGTGAAATTTAGTTTACTAATTTTTATA  100

seq1  CAGTTAAAAGAAGATTTAATATTGTTTTCTCCATATTACAGTACAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAAGAAGATTTAATATTGTTTTCTCCATATTACAGTACAATTTT  150

seq1  TAAAGCATATTATTTCTCCATAGTTTGAAGACTCTACAGGATCAATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATATTATTTCTCCATAGTTTGAAGACTCTACAGGATCAATGCCA  200

seq1  GACCCCAGCTTGCCTCTTCCAAACCAACTTGAAATTGCTCTAAGAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGCTTGCCTCTTCCAAACCAACTTGAAATTGCTCTAAGAAAAAT  250

seq1  TAAGGAGAATATTCAAGTAATTCTTAAAACACAAGCAACTTGCAAGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAATATTCAAGTAATTCTTAAAACACAAGCAACTTGCAAGTCAC  300

seq1  TAGAAGAGGTAATTGGAATAATTTGCATTTTGATTAGTATATTACTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGGTAATTGGAATAATTTGCATTTTGATTAGTATATTACTGGGA  350

seq1  ATGTTTTTAGAATTTTTAAAATATTTATTTACGTTAATTAATTAAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTAGAATTTTTAAAATATTTATTTACGTTAATTAATTAAAGTGG  400

seq1  CAGAGTTTTGCTAATTCCTCTCTTTATTCTTATATACTATTTCTAATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTTGCTAATTCCTCTCTTTATTCTTATATACTATTTCTAATGGC  450

seq1  TGATAATAGTCCATGTAGTTAATTTGAATTTATAATTCATTTGTTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAGTCCATGTAGTTAATTTGAATTTATAATTCATTTGTTTACTT  500

seq1  CATTCTACTTTGAGACATACTAAATAGGTAATAAAAGTTATTTAATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTACTTTGAGACATACTAAATAGGTAATAAAAGTTATTTAATTGAA  550

seq1  GCTTTATAAACAATATATTGCCTTTTGTTAACTACTATTTTCATTGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATAAACAATATATTGCCTTTTGTTAACTACTATTTTCATTGTTAC  600

seq1  TTATTTTTGTCACTTATTTTACATTATATGTTATATATCTTTGCTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGTCACTTATTTTACATTATATGTTATATATCTTTGCTCATTT  650

seq1  TCTTTGTGAGTAAAAAAAGTTGAAGCAAATGAAATTATTTAATCTATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGAGTAAAAAAAGTTGAAGCAAATGAAATTATTTAATCTATGAA  700

seq1  CTGAATTTCATTAATTGTTGGCAAATCAGCTCATTAAATTATTCATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCATTAATTGTTGGCAAATCAGCTCATTAAATTATTCATAAAG  750

seq1  TAATATAAACTGAATATCACTTAAATTTTTAGTTTCCACCTAAACATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAACTGAATATCACTTAAATTTTTAGTTTCCACCTAAACATATT  800

seq1  AATTACAAGTACATTTACAAAGAATTTATCATATACAATTTTGGCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAGTACATTTACAAAGAATTTATCATATACAATTTTGGCTTTTT  850

seq1  GATCAGTTCAGGAAAACTAATTTAAAATTTTTGGTTTATATGAGCTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTCAGGAAAACTAATTTAAAATTTTTGGTTTATATGAGCTACCA  900

seq1  CTAAATCATGTGTTTTAAAATATCCGTCTTAATCTTACTGAAGATGAAAC  950
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAATTCATGTGTTTTAAAATATCCGTC-TAATCTTACTGAAGATGAAAC  949

seq1  TTCTCTGCTTTGGCTTGGTAAACTTCCAATCTCAACACAATGATTCACTG  1000
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  TTCTCTGCTTTGGCTTGGTAAACTTCCAATCTCAACAC-ATGA-TCACTG  997

seq1  GCCTGTGCCCCTGAAATCCCAACTGTGTCTCCAGTGCTCTGCCTTAGTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCTGTGCCCCTGAAATCCCAACTGTGTCTCCAGTGCTCTGCC-TAGTGC  1046

seq1  TCTGTGACATCAGAGGGGTGATGGGACTGCACTTTCTTTCCAATTCTACC  1100
      |||||||||||||||||||||||||||||||||||| ||||| | | |||
seq2  TCTGTGACATCAGAGGGGTGATGGGACTGCACTTTC-TTCCATTACCACC  1095

seq1  ACCACCACTCATTGTTAGTTCTAAACTGCAGGATATAAGTAA  1142
      |  |||||||| ||||||   | |||||||||||  ||||||
seq2  A--ACCACTCA-TGTTAG--GTTAACTGCAGGATTAAAGTAA  1132