BAC Information

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BAC

Clone NameB6Ng01-140I21
Chromosome10 (Build37)
Map Location 127,394,940 - 127,547,497
singlet/doubletdoublet
Overlap geneLOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085
Upstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro
Downstream geneRbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140I21.bB6Ng01-140I21.g
ACCDH939252DH939253
length7151,030
definitionDH939252|Mus musculus domesticus DNA, BAC clone: B6Ng01-140I21, 5' end.DH939253|Mus musculus domesticus DNA, BAC clone: B6Ng01-140I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,394,940 - 127,395,650)(127,546,454 - 127,547,497)
sequence
gaattccaggagagacagctacacagagaagccaaccctaccccaaagac
agacaggaagagagaaagacagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagagagagagagagagagagagagagagagagagag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaggaggagggtggaagaaggaaggaaggaaagaagggagaaaag
aaggaaggaatcctgggtatttgtggtcccaggtcccagaactgatgagg
cagagacaggaggatctctcaactccctggccagccagtctagcccattt
aatgagttccagaccaatgaaagactctgtctctaaaaatgatagtgtct
gaggtatggtatctaaagttgctctttgccatccccacccccaccccccc
caggccacacacacatactcaccacaggagacagaagaccatgctcacaa
gactccagtaaaagatgacttttttcaatgtaactttttaaaatggatta
tttaagggaccagaaacttttgagaaatgtaattgaaaaataaacgccag
ccggggcggtggtggctcacgcctttaatcccagctcttgggatggcaga
ggcaggcggatttctgagttcaagggcagcttggtctatagaagtgagtt
ctaggacagccaggg
gaattctttccttggagggtctgactgaattctccagtccccacccacct
ctttgcttagtgcctacttggccctacagtggcaccagaagggacagcct
ccacctcactgccacatgcagatccagcactttgcactgagctaagaata
gaatttgcagtcaccacagtgacaagattccagctcagaaggctggggtt
agcccctccccataggcccaggagggtaatatgcagtaggtaaaaatctt
tgcatgaccagtgctgcagaaagaatctagctctaaaaacagttatcttt
gagtttgcaaaaaacaacaataaataaaagggactaagatactaagaagc
tgcaagcaggtgtatggttggggaaatcctacagcagggaggtaggtatg
tatttgtggaaatcccaatgaaatagaggggtttgtgtttatctccaagt
gtcctataactgacaggaggaaagcaagtacaagtcagaactgttctact
gcaaggaaggagaaagcatttgaaattggacttttaagcaaaatgatttg
aaatccagacaaatttagaatgttaattgatagaactgaggcaggaagac
tgtcaccagttcaaagccatcctgggtcagaaaaagcaattacccctaaa
gaaaacaaaaaagaaaaagaaaataacctcaacagcagcactttcatgta
gaatgataaatttctaggggaggccctgtccatcctacccttgggaacaa
ggacatgaggcagccccagcactcctcctgcacaagctaaaaacatggta
ccatgaccttcacccaccctcttcacctagtccaaaagttttttcattcc
taaaaacaactttcccagctgggcatggtggcacatgccctttaatccca
gcactcggaggcagagcagcagatttctgagtcgaagtcagcccgtctac
aacgtgattagttcaggacagcaaggctatacagagaaaccctgtctcaa
aaatcaaaacaaccgaaccaaaaacctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127394940_127395650
seq2: B6Ng01-140I21.b_50_764

seq1  GAATTCCAGGAGAGACAGCTACACAGAGAAGCCAACCCTACCCCAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGAGACAGCTACACAGAGAAGCCAACCCTACCCCAAAGAC  50

seq1  AGACAGGAAGAGAGAAAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAGAGAGAAAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  100

seq1  AAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  200

seq1  AGAAAGAGGAGGAGGGTGGAAGAAGGAAGGAAGGAAAGAAGGGAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAGGAGGGTGGAAGAAGGAAGGAAGGAAAGAAGGGAGAAAAG  250

seq1  AAGGAAGGAATCCTGGGTATTTGTGGTCCCAGGTCCCAGAACTGATGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAATCCTGGGTATTTGTGGTCCCAGGTCCCAGAACTGATGAGG  300

seq1  CAGAGACAGGAGGATCTCTCAACTCCCTGGCCAGCCAGTCTAGCCCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGGAGGATCTCTCAACTCCCTGGCCAGCCAGTCTAGCCCATTT  350

seq1  AATGAGTTCCAGACCAATGAAAGACTCTGTCTCTAAAAATGATAGTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTCCAGACCAATGAAAGACTCTGTCTCTAAAAATGATAGTGTCT  400

seq1  GAGGTATGGTATCTAAAGTTGCTCTTTGCCATCCCCACCCCCACCCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGGTATCTAAAGTTGCTCTTTGCCATCCCCACCCCCACCCCCCC  450

seq1  CAGGCCACACACACATACTCACCACAGGAGACAGAAGACCATGCTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACACACACATACTCACCACAGGAGACAGAAGACCATGCTCACAA  500

seq1  GACTCCAGTAAAAGATGACTTTTTTCAATGTAACTTTTTAAAATGGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGTAAAAGATGACTTTTTTCAATGTAACTTTTTAAAATGGATTA  550

seq1  TTTAAGGGACCAGAAACTTTTGAGAAATGTAATTGAAAAATAAACGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGGACCAGAAACTTTTGAGAAATGTAATTGAAAAATAAACGCCAG  600

seq1  CCGGG--CGTGGTGGCTCACGCCTTTAATCCCAGCACTTGGGA-GGCAGA  647
      |||||   ||||||||||||||||||||||||||| ||||||| ||||||
seq2  CCGGGGCGGTGGTGGCTCACGCCTTTAATCCCAGCTCTTGGGATGGCAGA  650

seq1  GGCAGGCGGATTTCTGAGTTCAAGGCCAGCTTGGTCTAAAG-AGTGAGTT  696
      ||||||||||||||||||||||||| |||||||||||| || ||||||||
seq2  GGCAGGCGGATTTCTGAGTTCAAGGGCAGCTTGGTCTATAGAAGTGAGTT  700

seq1  CCAGGACAGCCAGGG  711
      | |||||||||||||
seq2  CTAGGACAGCCAGGG  715

seq1: chr10_127546454_127547497
seq2: B6Ng01-140I21.g_68_1097 (reverse)

seq1  GAAAGGTTTTTTTGTTTCGTTTTGTTTTTTGATTTTTTGAGACAGGGTTT  50
      ||||||  |||||| |||| |   | |||||| |||||||||||||||||
seq2  GAAAGG--TTTTTGGTTCGGT---TGTTTTGA-TTTTTGAGACAGGGTTT  44

seq1  CTCTGTATAGCCTTGGCTGTCCTGGAACTAATTCACGTTGTAGACCGGGC  100
      |||||||||||||| |||||||| ||||||| |||||||||||| |||||
seq2  CTCTGTATAGCCTT-GCTGTCCT-GAACTAA-TCACGTTGTAGA-CGGGC  90

seq1  TGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGAT  150
      || | ||| ||||||||||||| ||| |||||||| ||||||||||||||
seq2  TGACTTCG-ACTCAGAAATCTG-CTG-CTCTGCCT-CCGAGTGCTGGGAT  136

seq1  TAAA-GGCATGTGCCACCATGCCCAGCTTGGAAAGTTGTTTTTAGGAATG  199
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAAGGGCATGTGCCACCATGCCCAGCTGGGAAAGTTGTTTTTAGGAATG  186

seq1  AAAAAACTTTTGGACTAGGTGAAGAGGGTGGGTGAAGGTCATGGTAACCA  249
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAAAACTTTTGGACTAGGTGAAGAGGGTGGGTGAAGGTCATGGT-ACCA  235

seq1  TGTTTTTAGCTTGTGCAGGAGGAGTGCTGGGGCTGCCTCATGTCCTTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAGCTTGTGCAGGAGGAGTGCTGGGGCTGCCTCATGTCCTTGTT  285

seq1  CCCAAGGGTAGGATGGACAGGGCCTCCCCTAGAAATTTATCATTCTACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGTAGGATGGACAGGGCCTCCCCTAGAAATTTATCATTCTACAT  335

seq1  GAAAGTGCTGCTGTTGAGGTTATTTTCTTTTTCTTTTTTGTTTTCTTTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCTGCTGTTGAGGTTATTTTCTTTTTCTTTTTTGTTTTCTTTAG  385

seq1  GGGTAATTGCTTTTTCTGACCCAGGATGGCTTTGAACTGGTGACAGTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTGCTTTTTCTGACCCAGGATGGCTTTGAACTGGTGACAGTCTT  435

seq1  CCTGCCTCAGTTCTATCAATTAACATTCTAAATTTGTCTGGATTTCAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCAGTTCTATCAATTAACATTCTAAATTTGTCTGGATTTCAAAT  485

seq1  CATTTTGCTTAAAAGTCCAATTTCAAATGCTTTCTCCTTCCTTGCAGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTTAAAAGTCCAATTTCAAATGCTTTCTCCTTCCTTGCAGTAG  535

seq1  AACAGTTCTGACTTGTACTTGCTTTCCTCCTGTCAGTTATAGGACACTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCTGACTTGTACTTGCTTTCCTCCTGTCAGTTATAGGACACTTG  585

seq1  GAGATAAACACAAACCCCTCTATTTCATTGGGATTTCCACAAATACATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAACACAAACCCCTCTATTTCATTGGGATTTCCACAAATACATAC  635

seq1  CTACCTCCCTGCTGTAGGATTTCCCCAACCATACACCTGCTTGCAGCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCCTGCTGTAGGATTTCCCCAACCATACACCTGCTTGCAGCTTC  685

seq1  TTAGTATCTTAGTCCCTTTTATTTATTGTTGTTTTTTGCAAACTCAAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCTTAGTCCCTTTTATTTATTGTTGTTTTTTGCAAACTCAAAGA  735

seq1  TAACTGTTTTTAGAGCTAGATTCTTTCTGCAGCACTGGTCATGCAAAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTTTAGAGCTAGATTCTTTCTGCAGCACTGGTCATGCAAAGAT  785

seq1  TTTTACCTACTGCATATTACCCTCCTGGGCCTATGGGGAGGGGCTAACCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTACTGCATATTACCCTCCTGGGCCTATGGGGAGGGGCTAACCC  835

seq1  CAGCCTTCTGAGCTGGAATCTTGTCACTGTGGTGACTGCAAATTCTATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCTGAGCTGGAATCTTGTCACTGTGGTGACTGCAAATTCTATTC  885

seq1  TTAGCTCAGTGCAAAGTGCTGGATCTGCATGTGGCAGTGAGGTGGAGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCAGTGCAAAGTGCTGGATCTGCATGTGGCAGTGAGGTGGAGGCT  935

seq1  GTCCCTTCTGGTGCCACTGTAGGGCCAAGTAGGCACTAAGCAAAGAGGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCTGGTGCCACTGTAGGGCCAAGTAGGCACTAAGCAAAGAGGTG  985

seq1  GGTGGGGACTGGAGAATTCAGTCAGACCCTCCAAGGAAAGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGACTGGAGAATTCAGTCAGACCCTCCAAGGAAAGAATTC  1030