BAC Information

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BAC

Clone NameB6Ng01-140L16
Chromosome10 (Build37)
Map Location 5,659,404 - 5,660,568
singlet/doubletsinglet
Overlap geneEsr1
Upstream geneVip, Myct1, Syne1
Downstream geneLOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140L16.bB6Ng01-140L16.g
ACCDH939375DH939376
length8011,142
definitionDH939375|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L16, 5' end.DH939376|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgataacagctctgatcaacaagggctccacctaagattcac
taatcttagaagccagggtcaagggcttcgtgtccttgccatagttccta
ttttagtctcttgtatagtccaccttccccttaggccattgtaaatacgt
gtgtgtgtgtgtgtgtgtgtgtgtgtatgggtgtaactctgttatagtat
ctattctggtttctcctttggtctgaaacttccttcttccttagtgatgg
taaattcctgtgtaagggagtgacttagcttttacaatcttgctgaattc
taaacccttgatcttggtcaaggacgcccttggactgttggaacactggt
ggaaagctttagccatgtcagaattcaattttaaaaagcacttataatag
gaaaatactgaaagagagcacgtagatccatacactagactaacgcggga
atggaactcgggagtgaaaaattactgtatgggtagggaacgctagactc
caggaagagagcttccttgaaactcttttgcctcatgagtgactttttaa
gcctcttggcttgtccagttgactcgaccggagagcgtagcacaagagca
atgtaaggaagaaaggaactgatttgttttatggtttgagggtccagtct
ctcatagacagggatgtcatggtgacagaggctgtggatgtcacatgcaa
agtcaggaagaagagctgataacagtgctcatttgctcaggtctgggact
tcggctcacagaatggtctgcccattgtcagggtaggtcttttctcatta
a
gaattctatacacacacacacacacacacacacacacacacacacacaca
cacacgcacacacaccacctcccatagtcacatccttctaggattccaca
tccccacaatcccccattcaaatcttttctagccacacacacactccgcc
ctgctcttttgagcatcagccctcaacgtacgtgtccaggaaaattctca
attcacctcttctttccaatctccaaagccataatcctaaccaatgctca
catttgaaacctgtaaaagaagaaagaaaaacagcaacaaagaaaaaaaa
aaaaaacagcaaagcctcatagctggctgggcatgtctctgggtttctcg
tcctcagagctagcctccacacaaggctggatttgacctttctcagaagc
catttatacccaattaccattttggattttacgaaggttgcataaaactt
aaatatcctccaactaacccatcaacttttctcatgtatgaaaatctctt
ctctaaccaaaccacatttaatctctgcatccatgttcataaaaacccct
tactactcctgcagaacaatcattctctctgctggacaagcaatcctttc
agtcctggcctggcctcaggaaaccgaggacagctgctgctctaccatct
gtctacataacacacctcaggtgccattgctgttgcctaaaatcctctcc
acactgaactgatgtccaggggccagtctgcctctcagtcctgtggtttc
tgattgtttctctttcatcccaagcatccaagactattatctgttctctg
ttgtgtcctctgcataggtgacaaaggcttctggctcctgttgttgggtc
ccttcttgcttgaacttcttgacgccattctcttaagtctccccagtctg
acccttcatactggcaatcaaaatggcccagtcaccctggctccttctgg
aatttaaagtgtctcaccacccactcatatttactggctctgaccacacc
actgctatcagaccatacaaatcagaatatcttctgcgaccagacttctt
ggacttgttctttggggagtatcgggtctggcatgaatcagactctgtac
attcgcctttcaatttgttctaactcactgctctagacagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5659404_5660568
seq2: B6Ng01-140L16.g_68_1209

seq1  GAATTCTATACACACACACACACACACACACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACACACACACACACACACACACACACACACACACACACACA  50

seq1  CACACGCACACACACCACCTCCCATAGTCACATCCTTCTAGGATTCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCACACACACCACCTCCCATAGTCACATCCTTCTAGGATTCCACA  100

seq1  TCCCCACAATCCCCCATTCAAATCTTTTCTAGCCACACACACACTCCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAATCCCCCATTCAAATCTTTTCTAGCCACACACACACTCCGCC  150

seq1  CTGCTCTTTTGAGCATCAGCCCTCAACGTACGTGTCCAGGAAAATTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTTGAGCATCAGCCCTCAACGTACGTGTCCAGGAAAATTCTCA  200

seq1  ATTCACCTCTTCTTTCCAATCTCCAAAGCCATAATCCTAACCAATGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTCTTCTTTCCAATCTCCAAAGCCATAATCCTAACCAATGCTCA  250

seq1  CATTTGAAACCTGTAAAAGAAGAAAGAAAAACAGCAACAAAGAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAACCTGTAAAAGAAGAAAGAAAAACAGCAACAAAGAAAAAAAA  300

seq1  AAAAAACAGCAAAGCCTCATAGCTGGCTGGGCATGTCTCTGGGTTTCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAGCAAAGCCTCATAGCTGGCTGGGCATGTCTCTGGGTTTCTCG  350

seq1  TCCTCAGAGCTAGCCTCCACACAAGGCTGGATTTGACCTTTCTCAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAGCTAGCCTCCACACAAGGCTGGATTTGACCTTTCTCAGAAGC  400

seq1  CATTTATACCCAATTACCATTTTGGATTTTACGAAGGTTGCATAAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACCCAATTACCATTTTGGATTTTACGAAGGTTGCATAAAACTT  450

seq1  AAATATCCTCCAACTAACCCATCAACTTTTCTCATGTATGAAAATCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCTCCAACTAACCCATCAACTTTTCTCATGTATGAAAATCTCTT  500

seq1  CTCTAACCAAACCACATTTAATCTCTGCATCCATGTTCATAAAAACCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACCAAACCACATTTAATCTCTGCATCCATGTTCATAAAAACCCCT  550

seq1  TACTACTCCTGCAGAACAATCATTCTCTCTGCTGGACAAGCAATCCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTCCTGCAGAACAATCATTCTCTCTGCTGGACAAGCAATCCTTTC  600

seq1  AGTCCTGGCCTGGCCTCAGGAAACCGAGGACAGCTGCTGCTCTACCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGCCTGGCCTCAGGAAACCGAGGACAGCTGCTGCTCTACCATCT  650

seq1  GTCTACATAACACACCTCAGGTGCCATTGCTGTTGCCTAAAATCCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATAACACACCTCAGGTGCCATTGCTGTTGCCTAAAATCCTCTCC  700

seq1  ACACTGAACTGATGTCCAGGGGCCAGTCTGCCTCTCAGTCCTGTGGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAACTGATGTCCAGGGGCCAGTCTGCCTCTCAGTCCTGTGGTTTC  750

seq1  TGATTGTTTCTCTTTCATCCCAAGCATCCAAGACTATTATCTGTTCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATTGTTTCTCTTTCATCCCAAGCATCCAAGACTATTATCTGTT-CTCT  799

seq1  GTTGTGTCCTCTGCATAGGTGACAAAGGCTTCTGGCTCCTGTTGTTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCCTCTGCATAGGTGACAAAGGCTTCTGGCTCCTGTTGTTGGGT  849

seq1  CCCTTCTTGCTTTGAACTTCTTGACGCCATTCTCTTAAGTCTCCCCAGTC  900
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  CCCTTCTTGC-TTGAACTTCTTGACGCCATTCTCTTAAGTCTCCCCAGT-  897

seq1  CTGACCCTTCATACTGGCAATCAAAATGGCCCAGTCACCCTGGCTCCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGACCCTTCATACTGGCAATCAAAATGGCCCAGTCACCCTGGCT-CCTT  946

seq1  CTGGAATTTAAAGTGTTCTCA-CACCCACTCATATTTAACTGGCTTCCTG  999
      ||||||||||||||| ||||| ||||||||||||||| |||||||  |||
seq2  CTGGAATTTAAAGTG-TCTCACCACCCACTCATATTT-ACTGGCT--CTG  992

seq1  ACCACACCACTGCCTATCCAGACCATACAAATCCAGAATATCTTCTGGCC  1049
      |||||||||||| |||| |||||||||||||| ||||||||||||||   
seq2  ACCACACCACTG-CTAT-CAGACCATACAAAT-CAGAATATCTTCTG---  1036

seq1  AGACCAGACTTCTCTGGACCTGTCCTTTGGGGAGGTCATCTGAGTCCTGG  1099
       |||||||||||| ||||| ||| ||||||||||   ||| | || ||||
seq2  CGACCAGACTTCT-TGGACTTGTTCTTTGGGGAG--TATC-GGGT-CTGG  1081

seq1  CATG-ATCAGACCTTCTGTACCATCTCAGCCTATCATTTTGTTCTCTACC  1148
      |||| |||||||  |||||||  ||   |||| ||| ||||||||  || 
seq2  CATGAATCAGAC--TCTGTACATTC---GCCTTTCAATTTGTTCT-AACT  1125

seq1  CACTGCTCTAGACAGCA  1165
      |||||||||||||||||
seq2  CACTGCTCTAGACAGCA  1142