BAC Information

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BAC

Clone NameB6Ng01-140P04
Chromosome10 (Build37)
Map Location 20,274,962 - 20,276,071
singlet/doubletsinglet
Overlap genePde7b
Upstream geneIfngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140P04.bB6Ng01-140P04.g
ACCDH939542DH939543
length1,2411,098
definitionDH939542|Mus musculus domesticus DNA, BAC clone: B6Ng01-140P04, 5' end.DH939543|Mus musculus domesticus DNA, BAC clone: B6Ng01-140P04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactctgcctgtgccatgcctgcctggatactgccatgctcc
caccttgatgataatggactaaatctctgaacctgtaaaccagtcccaat
taaatgttgtttttataagacttgccttggtcatggtgcctgttcacagc
agtaaaagtctaagacaagtactttctctagctcctccattgggggccct
gtgatccatccaatagctgactgtgagcatccacttatgtgtttgctagg
ccctggcatagtttatgtgtgtgtggtatgtgcctgtgtgtgtatgtgtg
cctgtgcatgtgtatctgtggaacttaccaagctggatggagagatttca
gagctctgagtcagagagtctccatgagatgagaacaggccagccatgcc
caccagtgcctggccagtgccagatagcatgaattgcatctttttgtaat
atttcctgcaacaggtggcaaaccaacatgctgggcaagaatccactaga
aatgtaagattattagcctgagagttagagttttatttactaagtgagag
aaaggcagtgctgggacgagtcacgtggactcaagcatgagaaacttgaa
acaaagaaagagagctctgaggtccccagctgtggaaagagacaagatgg
ctgccctgagtcagagaaccagagaatggaagctgcctacatcttgggga
agatattgatttaactgtgaatttataaaattgggattatttgcttttag
gatagatttatttacaaattttgtctgaatcatgtggggaattttgcccg
cagtttggaactataatagagaaaattagtcactgacttccagtagagag
ggcagtggtaattacctgctatgatcaggtattaattataaatgtctgtg
gctccaggcagagagttgacagataggtggtataacaggatggctgctct
aggcagagagcttaacagtaaagattgcctgcttctacaagcagatatta
gtcaaagtttgaataatggctttaagatggtataagaatatatgcttcta
ataagtcttacaggatactcaatcagtctagcgtgggggctccatggaaa
ttgggatttagtcagatgacaaccctggcctgctttatagaaatttatat
tatgttggatagaagttggatcatgctagatggttagtaaagtcattaga
gaacctgaattctcactattggctcgtctacgggcgattgc
gaattcaaaggctcagaaccttgctatattctaaccatggcaaaagtaag
atgggctctctaaccatactaagaagtgtgaaggagtagaagaaaatgct
taagcgagccgggcagtggtggtgcatccctttaatcccagcacttggga
ggcagaggcaggcggatttctgagttcgaggccagcctggtctacagagt
gagttccagaacagccagggctattcagagaaaccctgtctcaaaaacaa
caacaacaacaacaataataataatatgcttaagcgaaagaggaattgga
aaaccgacccaagttttgctgtacatttgatgagaacagacattaaaaga
aaaaagactgaaaacagtgtttggttataaagttgaagaccatggtggat
gcagtggtttatatttaacagccagccttttccttaaagctctgccgtaa
cagcaaccatcacgaccaaagagtgaaacaaaattgagaagccaagctgt
agtttgataccatgaacaactctggattcggccctagttcttgtgttcac
ggtttccagttgcttgtttcccttaagagtcgtcagcatgacttgaaaac
tcctacccaggcagacagaagacgctgtcacgtgggagtctcctagcctt
ttactcagaatgtggttcttgtcacggccaagaaaaatgtgaagatgtaa
agtttgtttcctatcctcacttggacctttccaaatgaagatctgcatgt
taggactggagagggatggtgggtaagagcatttgtgtcagaagcattcg
gtctctagcatatacagctatgtgtgggccatgtccactcatgtagtctc
agtatgaaaggaggtagaaataagataccttgggcttgctagccagtcag
cctggatgtagattcagtagagctctaacttaaagagtaagcagagaggg
tgaagcaaacattggaagtcctcatctacttcatacatgctatgtaccac
gtgccaacacatgtacatacatgcaatattcatcccctcaacactcacac
aatatatttgccaccaaatgggtgtgtacactcataccatattgaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20274962_20276071
seq2: B6Ng01-140P04.g_69_1166 (reverse)

seq1  TGTTCAAATATGTGTATGAGTGTACACA-CCATGTGTGTGCAAATATATG  49
      ||||| |||||| ||||||||||||||| |||| ||   |||||||||| 
seq2  TGTTC-AATATG-GTATGAGTGTACACACCCATTTGGTGGCAAATATAT-  47

seq1  TGTGTGAGTGTTTGAGGGGATGGATATGTGCATGTATGTACATGTGTGTG  99
      |||||||||| ||||||||||| |||| |||||||||||||||||||  |
seq2  TGTGTGAGTG-TTGAGGGGATGAATAT-TGCATGTATGTACATGTGTTGG  95

seq1  CACGTGTGTACATAGGCATGTATGGAGGTTAGATGAGGACTTCCAATGTT  149
      |||||| ||||||| ||||||||| ||  ||||||||||||||||||| |
seq2  CACGTG-GTACATA-GCATGTATGAAG--TAGATGAGGACTTCCAATG-T  140

seq1  TTGCTTCACCCCTCTCTGCTTACTCCTTTAAGTTAGAGGCTCTTACTGAA  199
      |||||||| ||||||||||||||| |||||||||||| |||| |||||||
seq2  TTGCTTCA-CCCTCTCTGCTTACT-CTTTAAGTTAGA-GCTC-TACTGAA  186

seq1  TCTACATCCAGGCTGACTGGCTAGCAAGCCCAAGGTATCTTATTTCTACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCCAGGCTGACTGGCTAGCAAGCCCAAGGTATCTTATTTCTACC  236

seq1  TCCTTTCATACTGAGACTACATGAGTGGACATGG-CCACACATAGCTGTA  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCTTTCATACTGAGACTACATGAGTGGACATGGCCCACACATAGCTGTA  286

seq1  TATGCTAGAGACCGAATGCTTCTGACACAAATGCTCTTACCCACCATCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGAGACCGAATGCTTCTGACACAAATGCTCTTACCCACCATCCC  336

seq1  TCTCCAGTCCTAACATGCAGATCTTCATTTGGAAAGGTCCAAGTGAGGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTCCTAACATGCAGATCTTCATTTGGAAAGGTCCAAGTGAGGAT  386

seq1  AGGAAACAAACTTTACATCTTCACATTTTTCTTGGCCGTGACAAGAACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAAACTTTACATCTTCACATTTTTCTTGGCCGTGACAAGAACCA  436

seq1  CATTCTGAGTAAAAGGCTAGGAGACTCCCACGTGACAGCGTCTTCTGTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAGTAAAAGGCTAGGAGACTCCCACGTGACAGCGTCTTCTGTCT  486

seq1  GCCTGGGTAGGAGTTTTCAAGTCATGCTGACGACTCTTAAGGGAAACAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTAGGAGTTTTCAAGTCATGCTGACGACTCTTAAGGGAAACAAG  536

seq1  CAACTGGAAACCGTGAACACAAGAACTAGGGCCGAATCCAGAGTTGTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAAACCGTGAACACAAGAACTAGGGCCGAATCCAGAGTTGTTCA  586

seq1  TGGTATCAAACTACAGCTTGGCTTCTCAATTTTGTTTCACTCTTTGGTCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAAACTACAGCTTGGCTTCTCAATTTTGTTTCACTCTTTGGTCG  636

seq1  TGATGGTTGCTGTTACGGCAGAGCTTTAAGGAAAAGGCTGGCTGTTAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTGCTGTTACGGCAGAGCTTTAAGGAAAAGGCTGGCTGTTAAAT  686

seq1  ATAAACCACTGCATCCACCATGGTCTTCAACTTTATAACCAAACACTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCACTGCATCCACCATGGTCTTCAACTTTATAACCAAACACTGTT  736

seq1  TTCAGTCTTTTTTCTTTTAATGTCTGTTCTCATCAAATGTACAGCAAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTTTTTTCTTTTAATGTCTGTTCTCATCAAATGTACAGCAAAAC  786

seq1  TTGGGTCGGTTTTCCAATTCCTCTTTCGCTTAAGCATATTATTATTATTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCGGTTTTCCAATTCCTCTTTCGCTTAAGCATATTATTATTATTG  836

seq1  TTGTTGTTGTTGTTGTTTTTGAGACAGGGTTTCTCTGAATAGCCCTGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTTTTGAGACAGGGTTTCTCTGAATAGCCCTGGCT  886

seq1  GTTCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCG  936

seq1  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGGATGCACCACCACTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGGATGCACCACCACTGC  986

seq1  CCGGCTCGCTTAAGCATTTTCTTCTACTCCTTCACACTTCTTAGTATGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCGCTTAAGCATTTTCTTCTACTCCTTCACACTTCTTAGTATGGT  1036

seq1  TAGAGAGCCCATCTTACTTTTGCCATGGTTAGAATATAGCAAGGTTCTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCCCATCTTACTTTTGCCATGGTTAGAATATAGCAAGGTTCTGA  1086

seq1  GCCTTTGAATTC  1110
      ||||||||||||
seq2  GCCTTTGAATTC  1098