BAC Information

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BAC

Clone NameB6Ng01-141A19
Chromosome10 (Build37)
Map Location 26,788,987 - 26,840,557
singlet/doubletdoublet
Overlap geneLama2
Upstream geneC030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141A19.bB6Ng01-141A19.g
ACCDH939616DH939617
length1,1381,154
definitionDH939616|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A19, 5' end.DH939617|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,788,987 - 26,790,159)(26,839,402 - 26,840,557)
sequence
gaattcaatgtcaaaaaagaccgtatgtctttcctgaagagtataaagcc
cataacagatgtaatttgacaggactgtggaaaaaattgcacagacaggt
tgagtgtgaatcaaatattctgttgtttgttagagaagatatctcagcaa
agattgcctcacagtcatttaactattgagtgaatgagtgagtgagtgag
caagtgagcgagtgaagctctaggatggagcctaggatcttgtgtgcagt
aggtgagtcctctaccagagactcttgtcccagcacaagggctggtctaa
ccttgaacttgctcttctcttgcccattccacctccagcatccacaatgc
tatttacctataatgggatgctctgtgagaagatgtgtagatgaagaaag
tttaggagaatgagcaaattaaggagacagaattcaactatgaacatatg
gcaccttggaatgacagcatgtgtgtgggtccatgtgtagcaacaattgg
gaggaagatccaagccagactaacactaaggcatgagaccagagaaactg
gacaaagtaataagaaacaggtgacacttgaattaaatggcaatagttta
tatggacagccaccatgtttagaaacatcaataatatatcagagtagaaa
ttactttatgcacttttatgttttaaattaggaagataatacaagactat
tatgtaaatatttatagactttagaacctatttgtaaaagtgaagatttc
aggaacacttttctgccacatcttcctacctcactttttaatctgaagtt
tatttctaaaccatatcaaatggagtttggcagtgtaatgatttattaca
ctaaaaatttctgttttaatagatggaacaatgctgtagaaacagattaa
attataaaatgttgtctggtgaatttgaaagattaagtgtatgagcttgt
gagaaagtcacttgtatctatatatgtcatggttcacaatttcatttctt
taatggtgtggcatagtaccctccaatatatgctatgaccttatcataaa
gaaaatcagcgtactagcttccatcgttgctagctctggcttcattgaga
tctgagctttcgagggagcttgctcttctttataagcc
gaattctttttccagatgaaatctcacacagaacaccaacctatcatgca
gtttcttggcagagcagacatcatttgtagagtactcgacacacctgcag
aatcctaatattccaaagagcacagctagaaaccctgtttactgcattgt
acacacagactcctgggatgggctttattgctgaaggcatctttctagcc
taatctatttatttccctagaccgatgaatgtttcctcctttaaaacttg
aatatggcaaggctgtagaaatgtatgggcaggtccatgtttagtgagct
cacagcctagagtatttcctttctcggattctaaagctgatatgactggt
cagcaaggcaaaggagcttacatgttcagcgacatgatgttgaatcatat
atctcctactttttcctcttacctgaagagagattgagtctgttcattgt
ttatgtgccctccattacacacaataccttaataactatgttctcaaaag
gagtttagcctggagaacaatgacgatttttcctcttcattgctgactgc
cctggtacctgcctctggttctcaggaggagcaacctgggcaaggtgaaa
agaccaagtgttgaataccagtttcgcatgtgacattcttgttacttaat
tgacaaaatttcccttatctcctccccatagccataaatgaaaaagctgt
acaactaaatgaaaccttaggaaatcaagataagacagcagagagaaact
tggaggagcttcaaaaggaaatcgaccggatgctgaaggaactgagaagt
aaagatcttcaaacacagaaagaagttgctgaggatgagctcgtgtgagt
agacattcggggggcttttcacttgacaagtgaacggcattattatgtct
cctaagttctgtctcacagtgagcggagcacagtttttcatgtcttcaat
tacccctacatactttgctttaaaatcaactaaaatcatgtttgccttaa
tataaaataatagtaactgaacgttgatgttattttttatactaggctga
tgggcttgcctttctgtattggtgtaagaaaatgtttggaactatccata
agctagaagaattgaagaatagacttgctttctttaagggtggcttgcct
ttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_26788987_26790159
seq2: B6Ng01-141A19.b_43_1180

seq1  GAATTCAATGTCAAAAAAGACCGTATGTCTTTCCTGAAGAGTATAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCAAAAAAGACCGTATGTCTTTCCTGAAGAGTATAAAGCC  50

seq1  CATAACAGATGTAATTTGACAGGACTGTGGAAAAAATTGCACAGACAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGATGTAATTTGACAGGACTGTGGAAAAAATTGCACAGACAGGT  100

seq1  TGAGTGTGAATCAAATATTCTGTTGTTTGTTAGAGAAGATATCTCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGAATCAAATATTCTGTTGTTTGTTAGAGAAGATATCTCAGCAA  150

seq1  AGATTGCCTCACAGTCATTTAACTATTGAGTGAATGAGTGAGTGAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCTCACAGTCATTTAACTATTGAGTGAATGAGTGAGTGAGTGAG  200

seq1  CAAGTGAGCGAGTGAAGCTCTAGGATGGAGCCTAGGATCTTGTGTGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGCGAGTGAAGCTCTAGGATGGAGCCTAGGATCTTGTGTGCAGT  250

seq1  AGGTGAGTCCTCTACCAGAGACTCTTGTCCCAGCACAAGGGCTGGTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTCCTCTACCAGAGACTCTTGTCCCAGCACAAGGGCTGGTCTAA  300

seq1  CCTTGAACTTGCTCTTCTCTTGCCCATTCCACCTCCAGCATCCACAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTGCTCTTCTCTTGCCCATTCCACCTCCAGCATCCACAATGC  350

seq1  TATTTACCTATAATGGGATGCTCTGTGAGAAGATGTGTAGATGAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCTATAATGGGATGCTCTGTGAGAAGATGTGTAGATGAAGAAAG  400

seq1  TTTAGGAGAATGAGCAAATTAAGGAGACAGAATTCAACTATGAACATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGAATGAGCAAATTAAGGAGACAGAATTCAACTATGAACATATG  450

seq1  GCACCTTGGAATGACAGCATGTGTGTGGGTCCATGTGTAGCAACAATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGGAATGACAGCATGTGTGTGGGTCCATGTGTAGCAACAATTGG  500

seq1  GAGGAAGATCCAAGCCAGACTAACACTAAGGCATGAGACCAGAGAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGATCCAAGCCAGACTAACACTAAGGCATGAGACCAGAGAAACTG  550

seq1  GACAAAGTAATAAGAAACAGGTGACACTTGAATTAAATGGCAATAGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTAATAAGAAACAGGTGACACTTGAATTAAATGGCAATAGTTTA  600

seq1  TATGGACAGCCACCATGTTTAGAAACATCAATAATATATCAGAGTAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACAGCCACCATGTTTAGAAACATCAATAATATATCAGAGTAGAAA  650

seq1  TTACTTTATGCACTTTTATGTTTTAAATTAGGAAGATAATACAAGACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATGCACTTTTATGTTTTAAATTAGGAAGATAATACAAGACTAT  700

seq1  TATGTAAATATTTATAGACTTTAGAACCTATTTGTAAAAGTGAAGATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAATATTTATAGACTTTAGAACCTATTTGTAAAAGTGAAGATTTC  750

seq1  AGGAACACTTTTCTGCCACATCTTCCTACCTCACTTTTTAATCTGAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACTTTTCTGCCACATCTTCCTACCTCACTTTTTAATCTGAAGTT  800

seq1  TATTTCTAAAACCATATCAAATGGAGTTTGGCAGTGTAATGATTTATTAC  850
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCT-AAACCATATCAAATGGAGTTTGGCAGTGTAATGATTTATTAC  849

seq1  ACTAAAAATTTCTGTTTTAAATAGATGGAACAATGCTGTAGAAACAAGAT  900
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  ACTAAAAATTTCTGTTTT-AATAGATGGAACAATGCTGTAGAAAC-AGAT  897

seq1  TAAAATTATAAAATGTTGTCTGGTGAAATTTGAAAAGATTAAGTGTTATG  950
      | ||||||||||||||||||||||| |||||| |||||||||||| ||||
seq2  T-AAATTATAAAATGTTGTCTGGTG-AATTTG-AAAGATTAAGTG-TATG  943

seq1  AGGCTTGTGAGAAAAGTCACTTGTATTCTATATATGTCATGGTTCACAAT  1000
      | ||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  A-GCTTGTGAG-AAAGTCACTTGTA-TCTATATATGTCATGGTTCACAAT  990

seq1  TTCATTTCTTTTAATGGTGTGGCATAGTACCCTCCCAATATAATGCTATG  1050
      |||||||| |||||||||||||||||||||||| ||||||| ||||||||
seq2  TTCATTTC-TTTAATGGTGTGGCATAGTACCCT-CCAATAT-ATGCTATG  1037

seq1  AACCTTATCATTATAGAAACATCAGCCGTACTAACCTTTCACATCGTTTG  1100
       ||||||||| || ||||| ||||| ||||||| |  ||| ||||| |||
seq2  -ACCTTATCA-TAAAGAAA-ATCAG-CGTACTAGC--TTC-CATCG-TTG  1079

seq1  CTAGCTTCTTGGCTTCATTGAGGATCCTGAAGCTTTTCTGAAGGGAGCCT  1150
      ||||||   |||||||||||| ||| ||| |||||   |  |||||||  
seq2  CTAGCT--CTGGCTTCATTGA-GAT-CTG-AGCTT---TCGAGGGAGC--  1119

seq1  TTGGCATCTTCTTTTAATAAGCC  1173
      |||   ||||||||  |||||||
seq2  TTG--CTCTTCTTT--ATAAGCC  1138

seq1: chr10_26839402_26840557
seq2: B6Ng01-141A19.g_65_1218 (reverse)

seq1  GTAAA-GCAAGCCACCACTAA--GAAGCAAGTC-ATATCTCCAGTCTTCT  46
      ||||| ||||||||||  |||   ||||||||| ||   || | ||||||
seq2  GTAAAGGCAAGCCACCCTTAAAGAAAGCAAGTCTATTCTTCAATTCTTCT  50

seq1  GAGCTTATTGATAGTT-CAAACA-TTTCTAACACCAATAACAGACAAAGC  94
       ||||||| ||||||| |||||| ||||| |||||||| ||||| || ||
seq2  -AGCTTATGGATAGTTCCAAACATTTTCTTACACCAAT-ACAGA-AAGGC  97

seq1  AAGCCCATCAGCCTAGTTATAAAAAATAACACTCCAACGTTCAGTTACTT  144
      |||||||||||||||| ||||||||||||||   |||||||||||||| |
seq2  AAGCCCATCAGCCTAG-TATAAAAAATAACA--TCAACGTTCAGTTAC-T  143

seq1  ATTATTTTATATATAGGCAAACATGATTTTAGTTGATTTTAAAGCAAAGT  194
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTATATTAAGGCAAACATGATTTTAGTTGATTTTAAAGCAAAGT  193

seq1  ATGTAGGGGTAATTGAAGACATGAAAAACTGTGCTCCGCTCACCTGTGGG  244
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  ATGTAGGGGTAATTGAAGACATGAAAAACTGTGCTCCGCTCA-CTGTGAG  242

seq1  ACAGAACTTAGGAGACATAATAATGCCGTTCACTTGTCAAGTGAAAAGCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTAGGAGACATAATAATGCCGTTCACTTGTCAAGTGAAAAGCC  292

seq1  CCCCGAATGTCTACTCACACGAGCTCATCCTCAGCAACTTCCTTCTGTGT  344
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCCGAATGTCTACTCACACGAGCTCATCCTCAGCAACTTCTTTCTGTGT  342

seq1  TTGAAGATCTTTACTTCTCAGTTCCTTCAGCATCCGGTCGATTTCCTTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATCTTTACTTCTCAGTTCCTTCAGCATCCGGTCGATTTCCTTTT  392

seq1  GAAGCTCCTCCAAGTTTCTCTCTGCTGTCTTATCTTGATTTCCTAAGGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCTCCAAGTTTCTCTCTGCTGTCTTATCTTGATTTCCTAAGGTT  442

seq1  TCATTTAGTTGTACAGCTTTTTCATTTATGGCTATGGGGAGGAGATAAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTTGTACAGCTTTTTCATTTATGGCTATGGGGAGGAGATAAGG  492

seq1  GAAATTTTGTCAATTAAGTAACAAGAATGTCACATGCGAAACTGGTATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTGTCAATTAAGTAACAAGAATGTCACATGCGAAACTGGTATTC  542

seq1  AACACTTGGTCTTTTCACCTTGCCCAGGTTGCTCCTCCTGAGAACCAGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGGTCTTTTCACCTTGCCCAGGTTGCTCCTCCTGAGAACCAGAG  592

seq1  GCAGGTACCAGGGCAGTCAGCAATGAAGAGGAAAAATCGTCATTGTTCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTACCAGGGCAGTCAGCAATGAAGAGGAAAAATCGTCATTGTTCTC  642

seq1  CAGGCTAAACTCCTTTTGAGAACATAGTTATTAAGGTATTGTGTGTAATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAAACTCCTTTTGAGAACATAGTTATTAAGGTATTGTGTGTAATG  692

seq1  GAGGGCACATAAACAATGAACAGACTCAATCTCTCTTCAGGTAAGAGGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACATAAACAATGAACAGACTCAATCTCTCTTCAGGTAAGAGGAA  742

seq1  AAAGTAGGAGATATATGATTCAACATCATGTCGCTGAACATGTAAGCTCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGAGATATATGATTCAACATCATGTCGCTGAACATGTAAGCTCC  792

seq1  TTTGCCTTGCTGACCAGTCATATCAGCTTTAGAATCCGAGAAAGGAAATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTGCTGACCAGTCATATCAGCTTTAGAATCCGAGAAAGGAAATA  842

seq1  CTCTAGGCTGTGAGCTCACTAAACATGGACCTGCCCATACATTTCTACAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGCTGTGAGCTCACTAAACATGGACCTGCCCATACATTTCTACAG  892

seq1  CCTTGCCATATTCAAGTTTTAAAGGAGGAAACATTCATCGGTCTAGGGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCATATTCAAGTTTTAAAGGAGGAAACATTCATCGGTCTAGGGAA  942

seq1  ATAAATAGATTAGGCTAGAAAGATGCCTTCAGCAATAAAGCCCATCCCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGATTAGGCTAGAAAGATGCCTTCAGCAATAAAGCCCATCCCAG  992

seq1  GAGTCTGTGTGTACAATGCAGTAAACAGGGTTTCTAGCTGTGCTCTTTGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGTGTGTACAATGCAGTAAACAGGGTTTCTAGCTGTGCTCTTTGG  1042

seq1  AATATTAGGATTCTGCAGGTGTGTCGAGTACTCTACAAATGATGTCTGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAGGATTCTGCAGGTGTGTCGAGTACTCTACAAATGATGTCTGCT  1092

seq1  CTGCCAAGAAACTGCATGATAGGTTGGTGTTCTGTGTGAGATTTCATCTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGAAACTGCATGATAGGTTGGTGTTCTGTGTGAGATTTCATCTG  1142

seq1  GAAAAAGAATTC  1156
      ||||||||||||
seq2  GAAAAAGAATTC  1154