BAC Information

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BAC

Clone NameB6Ng01-141D04
Chromosome19 (Build37)10 (Build37)
Map Location 45,135,375 - 45,136,439104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneErlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3
Downstream geneKazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D04.bB6Ng01-141D04.g
ACCDH939714DH939715
length1,055758
definitionDH939714|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D04, 5' end.DH939715|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,135,375 - 45,136,439)(104,053,903 - 104,054,363)
sequence
gaattcctgatcttcctgcctctaccccccaaatgctgggattgtagata
tgagctaccatgaaagagaaatccagagaaatccactgttctttagggat
aggtgaatatggaatcccaaagcactctcaaaccttacctacatgttgac
tctaggtatggtcgtgaacactgtggttctcagtctagttcacatctcag
caaacctaaaagaatgacacataagagatagcgaggttcacagccctggt
gattacaggatggaacagcagcgtctcccttcagcaagcatgtcagattc
tcggaggacagtggtatttgagaagtcccctggccaacatgaagctcata
cctagatgagacaggcagcaaagggatgaattccgctctcttcacagatg
tctagaatcgagtgcaggataaggtggggtgggcatcacctatggaaaag
ccatgggttggtcctagggataaaaccgaggtcatcaggcttcaggccaa
gcgtcccaaatggctgagctatctcgtcagccctttaattatatttttta
attagcttaccaagtagtgggttttcataaggcttctcatacatctttag
ttctgatcactttccctctgttcccacttcccctcccccatccccactaa
agcctttctgcccctcatcccttatcctatccctttatgtttatatctct
gtcttctaccattcccttcccctcttaaggccaagcctcgggccccacat
ggtggaaagagagcgccaactcttataaattattagaattctcatctcta
cacctacctatgttgaagatcttaaatgaccgcacgtgtacatgcatgta
aaataaatgtaaaaaattaaagagctagggctggagaggtggttcagagg
ttaagacattgactgctcttccagagatcctgggttcaattcccagcaac
cacatggtgtctcacacatctgtaatggatccgatgcctcttctagtatg
tctgagcagtgacagtgtactcattacattagtaaataataaaatctttt
aaaaa
gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatgactaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttacgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattcactcagaaaa
tagtatagcgagatataaggtacaatatgcaaaacatatgacactgaaga
agaacgaagaccaaagtgtggacactttgctcattcttagaattggaaac
aatcacccatggaaggagttacagagacaaagtttggagctgagacaaag
gatggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45135375_45136439
seq2: B6Ng01-141D04.b_49_1103

seq1  GAATTCCTGATCTTCCTGCCTCTACCCCCCAAATGCTGGGATTGTAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTCCTGCCTCTACCCCCCAAATGCTGGGATTGTAGATA  50

seq1  TGAGCTACCATGAAAGAGAAATCCAGAGAAATCCACTGTTCTTTAGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACCATGAAAGAGAAATCCAGAGAAATCCACTGTTCTTTAGGGAT  100

seq1  AGGTGAATATGGAATCCCAAAGCACTCTCAAACCTTACCTACATGTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATATGGAATCCCAAAGCACTCTCAAACCTTACCTACATGTTGAC  150

seq1  TCTAGGTATGGTCGTGAACACTGTGGTTCTCAGTCTAGTTCACATCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTATGGTCGTGAACACTGTGGTTCTCAGTCTAGTTCACATCTCAG  200

seq1  CAAACCTAAAAGAATGACACATAAGAGATAGCGAGGTTCACAGCCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTAAAAGAATGACACATAAGAGATAGCGAGGTTCACAGCCCTGGT  250

seq1  GATTACAGGATGGAACAGCAGCGTCTCCCTTCAGCAAGCATGTCAGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGGATGGAACAGCAGCGTCTCCCTTCAGCAAGCATGTCAGATTC  300

seq1  TCGGAGGACAGTGGTATTTGAGAAGTCCCCTGGCCAACATGAAGCTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGGACAGTGGTATTTGAGAAGTCCCCTGGCCAACATGAAGCTCATA  350

seq1  CCTAGATGAGACAGGCAGCAAAGGGATGAATTCCGCTCTCTTCACAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGAGACAGGCAGCAAAGGGATGAATTCCGCTCTCTTCACAGATG  400

seq1  TCTAGAATCGAGTGCAGGATAAGGTGGGGTGGGCATCACCTATGGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCGAGTGCAGGATAAGGTGGGGTGGGCATCACCTATGGAAAAG  450

seq1  CCATGGGTTGGTCCTAGGGATAAAACCGAGGTCATCAGGCTTCAGGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTTGGTCCTAGGGATAAAACCGAGGTCATCAGGCTTCAGGCCAA  500

seq1  GCGTCCCAAATGGCTGAGCTATCTCGTCAGCCCTTTAATTATATTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCAAATGGCTGAGCTATCTCGTCAGCCCTTTAATTATATTTTTTA  550

seq1  ATTAGCTTACCAAGTAGTGGGTTTTCATAAGGCTTCTCATACATCTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTACCAAGTAGTGGGTTTTCATAAGGCTTCTCATACATCTTTAG  600

seq1  TTCTGATCACTTTCCCTCTGTTCCCACTTCCCCTCCCCCATCCCCACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCACTTTCCCTCTGTTCCCACTTCCCCTCCCCCATCCCCACTAA  650

seq1  AGCCTTTCTGCCCCTCATCCCTTATCCTATCCCTTTATGTTTATATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTGCCCCTCATCCCTTATCCTATCCCTTTATGTTTATATCTCT  700

seq1  GTCTTCTACCATTCCCTTCCCCTCTTAAGGCCAAGCCTCGGGCCCCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTACCATTCCCTTCCCCTCTTAAGGCCAAGCCTCGGGCCCCACAT  750

seq1  GGTGGAAAGAGAGCGCCAACTCTTATAAATTATTAGAATTCTCATCTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAGAGAGCGCCAACTCTTATAAATTATTAGAATTCTCATCTCTA  800

seq1  CACCTACCTATGTTGAAGATCTTAAATGACCGCACGTGTACATGCATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCTATGTTGAAGATCTTAAATGACCGCACGTGTACATGCATGTA  850

seq1  AAATAAATGTAAAAAATTAAAGAGCTAGGGCTGGAGAGGTGGTTCAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGTAAAAAATTAAAGAGCTAGGGCTGGAGAGGTGGTTCAGAGG  900

seq1  TTAAGAACATTGACTGCTCTTCCAGAGATCCTGGGTTCAATTCCCAGCAA  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAG-ACATTGACTGCTCTTCCAGAGATCCTGGGTTCAATTCCCAGCAA  949

seq1  CCACATGGTGTCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTA  1000
      |||||||||||||||||  |||||||||| |||||||||| |||||||||
seq2  CCACATGGTGTCTCACA--CATCTGTAAT-GGATCCGATG-CCTCTTCTA  995

seq1  GTATGTCTGAAGGCAGTGACAGTGTACTCATTACATTAAGTAAATAAATA  1050
      ||||||||||  ||||||||||||||||||||||||| |||||||||   
seq2  GTATGTCTGA--GCAGTGACAGTGTACTCATTACATT-AGTAAATAA--T  1040

seq1  AAAATCTTTTAAAAA  1065
      |||||||||||||||
seq2  AAAATCTTTTAAAAA  1055

seq1: chr10_104053903_104054363
seq2: B6Ng01-141D04.g_67_537 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||| ||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTTTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||| |||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| |||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  TCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGTCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCT  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||| ||||| ||| ||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGTTTCTCAGCCTTTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      ||||||||| |||||||||||
seq2  GTATTCCTCGGGTGAGAATTC  471