BAC Information

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BAC

Clone NameB6Ng01-141E16
Chromosome3 (Build37)10 (Build37)
Map Location 48,525,863 - 48,526,985104,053,636 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666202, LOC666208, 1700018B24Rik
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E16.bB6Ng01-141E16.g
ACCDH939786DH939787
length1,091875
definitionDH939786|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E16, 5' end.DH939787|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,525,863 - 48,526,985)(104,053,636 - 104,054,363)
sequence
gaattcatctttcaatgaaaagcagaacttttttttgagttataaaaaga
agaaaaaaattattaaaggttgatttttctgagaaaaagataatagcttt
gaaatgtagattcaaacttagcattttaattcaaatgagcatagctctat
gtaaaccaataactgcaggttataaatacctaaccaaaaagcaaacagtt
aaaatgagagaagagctgtcctctgtgaatttgtcaatatgtaggacatc
gacaacctgccaagctactacatgtctcaggagacattccgatgaacttc
aatttttatatgataattggagatttcagaacctactgttccaccagtta
gcaaagatagatctatacaaagatataataacagtttgaaaaatgttcag
gttagtgcatatctctggataaggtttagtgagttcaagtgacataaaat
tattgtaggaaataattatacaatatatggattctttcaattactcaact
gttgggaactttgccaggtttcaaaaatccagcaatttcatcaaaatcca
ttgggaagaaatatgaactagaaaaatacctctctggattctatcttaat
tttgtgggttttattaccacattaaagcatcaattgcttctagggatatt
tgcaagtctttataacattttacaatgttttaagttggaatacaagtata
tcatttcagtttcttatactcagagacaaaatattttttgttgtcagttg
ttagaatgttagtttcttcaatgtaattaaatatcagaatctggctagga
gtgaactgaatttctttttttacccctgccaattatctcatgttgtaact
tactgttaataaaacaaacaaaaaaaaacagtgagaagttttcattaaag
tttgcagtgtgtgttttatttggattctagaaatacagataggagctaag
atgtcataggttcatatgtcagacagagacactgttgtggttttcatgtt
ctcttcggatatgggaaatatctaatgttcatatgctgcttacttttgac
tcaggatccaagttatttcattgatcaacaggcctaggttg
gaattctcacctgatgaataccaaatggcacagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
accacctcacaccagtccgaatggctaagatcaaaagttcaggtgatagc
agatgctggcaaggatgtggaaaaagaggaacactcctccattgttggtg
ggattgcaagcttatacaaccactctggaaattagtctggtggttcctca
gaaaattggacatagtactactggaggatcctgcaatacctttcctgggc
atatatccaaaagatgttccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatatccagaagctggaaagagcccaggt
acccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactgctcatctattaaatagaatgaatttatgaaaatcctaggcaa
atgtatggacctggagggcatcatcctgagtgaggtaactcaatcacaaa
agaactcacacaataatgtactcactgataagtggatattagtccagaca
cttagaatacccaagatataagatacaatttgctaaacacatgaaaactc
aagaagaacgaagaccaaagtgtgaacactttgcccctttcttagaattg
ggaacaaaacacccatggaaggagttacagagacaaagttgtagctgagt
tgaaaggatggatcatctagagagtgccatggctgggtagacttttggga
tagcattgggaatataaatgaaataataaaaaaataaagaaagaaagtat
gtgctgcctaagtggtaggaacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48525863_48526985
seq2: B6Ng01-141E16.b_46_1136

seq1  GAATTCATCTTTCAATGAAAAGCAGAACTTTTTTTTGAGTTATAAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTCAATGAAAAGCAGAACTTTTTTTTGAGTTATAAAAAGA  50

seq1  AGAAAAAAATTATTAAAGGTTGATTTTTCTGAGAAAAAGATAATAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATTATTAAAGGTTGATTTTTCTGAGAAAAAGATAATAGCTTT  100

seq1  GAAATGTAGATTCAAACTTAGCATTTTAATTCAAATGAGCATAGCTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGATTCAAACTTAGCATTTTAATTCAAATGAGCATAGCTCTAT  150

seq1  GTAAACCAATAACTGCAGGTTATAAATACCTAACCAAAAAGCAAACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAATAACTGCAGGTTATAAATACCTAACCAAAAAGCAAACAGTT  200

seq1  AAAATGAGAGAAGAGCTGTCCTCTGTGAATTTGTCAATATGTAGGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGAGAAGAGCTGTCCTCTGTGAATTTGTCAATATGTAGGACATC  250

seq1  GACAACCTGCCAAGCTACTACATGTCTCAGGAGACATTCCGATGAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTGCCAAGCTACTACATGTCTCAGGAGACATTCCGATGAACTTC  300

seq1  AATTTTTATATGATAATTGGAGATTTCAGAACCTACTGTTCCACCAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATATGATAATTGGAGATTTCAGAACCTACTGTTCCACCAGTTA  350

seq1  GCAAAGATAGATCTATACAAAGATATAATAACAGTTTGAAAAATGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATAGATCTATACAAAGATATAATAACAGTTTGAAAAATGTTCAG  400

seq1  GTTAGTGCATATCTCTGGATAAGGTTTAGTGAGTTCAAGTGACATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGCATATCTCTGGATAAGGTTTAGTGAGTTCAAGTGACATAAAAT  450

seq1  TATTGTAGGAAATAATTATACAATATATGGATTCTTTCAATTACTCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGGAAATAATTATACAATATATGGATTCTTTCAATTACTCAACT  500

seq1  GTTGGGAACTTTGCCAGGTTTCAAAAATCCAGCAATTTCATCAAAATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAACTTTGCCAGGTTTCAAAAATCCAGCAATTTCATCAAAATCCA  550

seq1  TTGGGAAGAAATATGAACTAGAAAAATACCTCTCTGGATTCTATCTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAAATATGAACTAGAAAAATACCTCTCTGGATTCTATCTTAAT  600

seq1  TTTGTGGGTTTTATTACCACATTAAAGCATCAATTGCTTCTAGGGATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGTTTTATTACCACATTAAAGCATCAATTGCTTCTAGGGATATT  650

seq1  TGCAAGTCTTTATAACATTTTACAATGTTTTAAGTTGGAATACAAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCTTTATAACATTTTACAATGTTTTAAGTTGGAATACAAGTATA  700

seq1  TCATTTCAGTTTCTTATACTCAGAGACAAAATATTTTTTGTTGTCAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAGTTTCTTATACTCAGAGACAAAATATTTTTTGTTGTCAGTTG  750

seq1  TTAGAATGTTAGTTTCTTCAATGTAATTAAATATCAGAATCTGGCTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTTAGTTTCTTCAATGTAATTAAATATCAGAATCTGGCTAGGA  800

seq1  GTGAAACTGAATTTCTTTTTTTAACCCCTGCCAATTATCTCATGTTGTAA  850
      ||| |||||||||||||||||| ||||||||||||||||||||||||| |
seq2  GTG-AACTGAATTTCTTTTTTT-ACCCCTGCCAATTATCTCATGTTGT-A  847

seq1  ACTTACTGTTAATAAAAACAAAACAAAAAAAAAACAGTGAGAAGTTTTTC  900
      ||||||||||||| ||||||||   ||||||||||||||||||| |||||
seq2  ACTTACTGTTAAT-AAAACAAA--CAAAAAAAAACAGTGAGAAG-TTTTC  893

seq1  ATTTAAAGTTTGCAGTGTGTGTTTTTAATTTTGGATTCTAGAAATACAAG  950
      | |||||||||||||||||||||||    |||||||||||||||||||  
seq2  A-TTAAAGTTTGCAGTGTGTGTTTT---ATTTGGATTCTAGAAATACA--  937

seq1  AATAGGAGCTAAGATGTCCATAGGGTTCATAATGTCAGACAGAGACACTG  1000
       |||||||||||||||| |||| ||||||| |||||||||||||||||||
seq2  GATAGGAGCTAAGATGT-CATA-GGTTCAT-ATGTCAGACAGAGACACTG  984

seq1  TTGTGGTTTTTCCATGTTCTCTTCCAGATAAATGGGAAATATCTAATGTT  1050
      ||||||||||  ||||||||||| | |||  |||||||||||||||||||
seq2  TTGTGGTTTT--CATGTTCTCTT-CGGAT--ATGGGAAATATCTAATGTT  1029

seq1  CATATGGCTGCTTTACTTTTGTAACTCAGGATCTCAAAGTTCTATTCATT  1100
      ||||| ||||| |||||||||  ||||||||  || ||||| | ||||||
seq2  CATAT-GCTGC-TTACTTTTG--ACTCAGGA--TCCAAGTTAT-TTCATT  1072

seq1  GATCAACACAAGCCACTAGGTTG  1123
      |||||||   || | ||||||||
seq2  GATCAAC---AGGC-CTAGGTTG  1091

seq1: chr10_104053636_104054363
seq2: B6Ng01-141E16.g_67_582 (reverse)

seq1  CTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCTCCATTTACATTTAATTTAATTAATGTAATTACAATTAATTAATTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTAATTAAATAATTTAATAATTTAATTGATAAATTAATTTAATTAATTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTAATTAATTAAATTAAATAATAATTTAATAATAAATTAAATATTTTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTAATAATAATTTTATAAGTAAATA-ATTTAATTAATGTAATTTAAT  249
                      |  | ||  ||| ||||   ||  | | ||| | 
seq2  ---------------CTCCAGGTCCATACATTTGCCTA--GGATTTTCA-  32

seq1  TAATGTAATTACATTACATTTAATAG----------CTCCATTGTGTAAA  289
           ||| | ||||  |||||||||          ||||||||||||||
seq2  -----TAAATTCATTCTATTTAATAGATGAGCAGTACTCCATTGTGTAAA  77

seq1  TGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCT  339
      |||||||||||||||||||| ||||||||||||||||| | ||||| |||
seq2  TGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGTACCTGGGCTCT  127

seq1  TTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCA  389
      |||||||| |||| |||||||||||||||||||||||| |||||||||||
seq2  TTCCAGCTTCTGGATATTATAAATAAGGCTGCTATGAACATAGTGGAGCA  177

seq1  TGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAG  439
      ||||||||||||||| |||||  |||||| ||||||||||||||| | ||
seq2  TGTGTCCTTCTTACCAGTTGGAACATCTTTTGGATATATGCCCAGGAAAG  227

seq1  GTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGC  489
      ||||||| ||||||||| |||||||||||||||||||||||| ||||| |
seq2  GTATTGCAGGATCCTCCAGTAGTACTATGTCCAATTTTCTGAGGAACCAC  277

seq1  CAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATG  539
      |||||  |||||||||||||||||| |||| |||||||||||||||||||
seq2  CAGACTAATTTCCAGAGTGGTTGTATAAGCTTGCAATCCCACCAACAATG  327

seq1  GAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTG  589
      ||||||||||||||||| |||||||||| ||||||||||||| |||||||
seq2  GAGGAGTGTTCCTCTTTTTCCACATCCTTGCCAGCATCTGCTATCACCTG  377

seq1  AATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTT  639
      || |||||||||||||||||| |||||||||||||||| |||||||||||
seq2  AACTTTTGATCTTAGCCATTCGGACTGGTGTGAGGTGGTATCTCAGGGTT  427

seq1  GTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAG  477

seq1  GTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  728
      |||||||| ||||||| ||||||| ||||||||||||||
seq2  GTGCTTCTGTGCCATTTGGTATTCATCAGGTGAGAATTC  516