BAC Information

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BAC

Clone NameB6Ng01-141I07
Chromosome10 (Build37)4 (Build37)
Map Location 104,053,500 - 104,054,36351,199,901 - 51,200,481
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I07.bB6Ng01-141I07.g
ACCDH939958DH939959
length967977
definitionDH939958|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I07, 5' end.DH939959|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,500 - 104,054,363)(51,199,901 - 51,200,481)
sequence
gaattctcacctgaggaatactcaatggcagagaatcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcatggatgtggagaaaacggaacactcctccattgttttgt
gattgcaggcttgtacaaccactctgttaatcagtctcgtggttcctcag
aaaattggataaagtactactggaggatccagcaatacctcttctgggca
tatatccagaagatgccccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaacgatcccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaat
tggatggaccaggagggcatcatcctgagtgaggtaacacattcacaaag
gaactcacacaatatatactcactgataagtggatattagcccaaaacct
aggacacccaaaatataagatacaatttgctaaacacatgaaactcaaga
aaaatgaatactgaagtgtggacactatgcccctccttagaagtgggaac
aaaacacccatggaaggatttacagagacaaagtttggagctgagaggaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgaataaataattattaatttatagattgttttaatag
gatccagctcaatcaattaatgagaatgatttctgctgtagggtatacag
atggcttattgaatggctctcggtgatagagaaatgaaacaaaatcagtc
attgtggctttagtcaa
gaattccaaatgacaataatggtcttttcataaacttaaatctcaatttt
cttattataatgtcatatactttttacattatgattcaggtgggtccagc
caggagtgcacagggcacaagaatttcagagcagctggtccttctggttg
ccatcagcacccaggagatagggctgtcccacagccctctgtgcatgggt
tctgccaggggcattctggtctcccaggagtgctgacacaggcttacagg
cccataggagggacaagttcctgccagagacaacaagacctactaacacc
acagataaaaaaaaatgacaaaagaaaagcacaagaacctttccaacaga
aactaagactatatggcatcatcagaaaccagttctccaacaacaagaag
tcctggataccccaacacaatggaaaaggaagatttggattgaaaaatga
catctcatgatgctgatagaggacttcgagaaatacataaaattccttaa
agaaatacaggagaacacaggtaaacaggtagaagcattatagaggaaac
acaaaaatcccttaaagaattacagaaaacacaagcaaacaggagaagga
attgaaaaaaatgatccaggatctaataatgaaagtagaaacaataaaga
aatcacaaatggaaacaactcaggagatagaaagcctacgaaagacatca
ggagtcatagattcaaacatcaacagcagaatacaggagatagaagggag
gctctcaggtgcagaagataccatagaaaacattcatacaacagtcaaag
aaagtgaagaatgcaaagagctcctaaccaaaacatctaggaaatccagg
aaacaatgagaagaccaaacctaaaggataataggtatagaagagagtga
agatttccagcttaaagtgtcagtaaataccatcaaaaaaaattaaagaa
gaaaacttccctaacctgaccaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053500_104054363
seq2: B6Ng01-141I07.b_48_697 (reverse)

seq1  TCTTGAGTTTAATGTGTTTAGCAAATTGTATCTTATATCTTGGGTATCCT  50
      |||||||||| ||||||||||||||||||||||||||| |||||| ||||
seq2  TCTTGAGTTTCATGTGTTTAGCAAATTGTATCTTATATTTTGGGTGTCCT  50

seq1  AAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGCGCGAGTT  100
      | |||| |||||||||||||||||||||||||||| |||||| | |||||
seq2  AGGTTT-TGGGCTAATATCCACTTATCAGTGAGTATATATTGTGTGAGTT  99

seq1  CCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCC  150
      ||||||||| || |||||| ||||||||||||| | |||| |||||||||
seq2  CCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCTGGTCCATCC  149

seq1  ATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACA  200
      | ||| ||||||||||||||||||||||||||||||||||          
seq2  AATTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGC----------  189

seq1  TTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAAT  250
                                                        
seq2  --------------------------------------------------  189

seq1  TTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAA  300
                                                        
seq2  --------------------------------------------------  189

seq1  ATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAAT  350
                                                        
seq2  --------------------------------------------------  189

seq1  TTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATT  400
          | ||||                             |||        
seq2  ----TGAGTA-----------------------------GTA--------  198

seq1  ACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTC  450
                 |||||||||||| ||||||||||||||||||||| ||||
seq2  -----------CTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTC  237

seq1  CTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATA  500
      ||||||||||||||||||||| || |||||||| ||||||||||||||||
seq2  CTCTGTTGAGGGGCATCTGGGATCGTTCCAGCTTCTGGCTATTATAAATA  287

seq1  AGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCA  550
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  AGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCA  337

seq1  TCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTAC  600
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCAGTAGTAC  387

seq1  TATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTA  650
      | | ||||||||||||| ||||| | |||| ||||  |||||||||||||
seq2  TTTATCCAATTTTCTGAGGAACCACGAGACTGATTAACAGAGTGGTTGTA  437

seq1  CAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACAT  700
      ||||||||||||| ||  |||||||||||||||||||  |||||||||||
seq2  CAAGCCTGCAATCACA-AAACAATGGAGGAGTGTTCCGTTTTCTCCACAT  486

seq1  CCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGAC  750
      ||  |||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCATGCCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGAC  536

seq1  TGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGA  586

seq1  TTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCC  850
      |||||||||||||||||||||||||||| ||||||||||||  |||||||
seq2  TTAAGGATGTTGAACATTTTTTCAGGTGATTCTCTGCCATTGAGTATTCC  636

seq1  TCAGGTGAGAATTC  864
      ||||||||||||||
seq2  TCAGGTGAGAATTC  650

seq1: chr4_51199901_51200481
seq2: B6Ng01-141I07.g_70_650

seq1  GAATTCCAAATGACAATAATGGTCTTTTCATAAACTTAAATCTCAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGACAATAATGGTCTTTTCATAAACTTAAATCTCAATTTT  50

seq1  CTTATTATAATGTCATATACTTTTTACATTATGATTCAGGTGGGTCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATAATGTCATATACTTTTTACATTATGATTCAGGTGGGTCCAGC  100

seq1  CAGGAGTGCACAGGGCACAAGAATTTCAGAGCAGCTGGTCCTTCTGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGCACAGGGCACAAGAATTTCAGAGCAGCTGGTCCTTCTGGTTG  150

seq1  CCATCAGCACCCAGGAGATAGGGCTGTCCCACAGCCCTCTGTGCATGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCACCCAGGAGATAGGGCTGTCCCACAGCCCTCTGTGCATGGGT  200

seq1  TCTGCCAGGGGCATTCTGGTCTCCCAGGAGTGCTGACACAGGCTTACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGGGCATTCTGGTCTCCCAGGAGTGCTGACACAGGCTTACAGG  250

seq1  CCCATAGGAGGGACAAGTTCCTGCCAGAGACAACAAGACCTACTAACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGGAGGGACAAGTTCCTGCCAGAGACAACAAGACCTACTAACACC  300

seq1  ACAGATAAAAAAAAATGACAAAAGAAAAGCACAAGAACCTTTCCAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAAAAAAATGACAAAAGAAAAGCACAAGAACCTTTCCAACAGA  350

seq1  AACTAAGACTATATGGCATCATCAGAAACCAGTTCTCCAACAACAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGACTATATGGCATCATCAGAAACCAGTTCTCCAACAACAAGAAG  400

seq1  TCCTGGATACCCCAACACAATGGAAAAGGAAGATTTGGATTGAAAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATACCCCAACACAATGGAAAAGGAAGATTTGGATTGAAAAATGA  450

seq1  CATCTCATGATGCTGATAGAGGACTTCGAGAAATACATAAAATTCCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATGATGCTGATAGAGGACTTCGAGAAATACATAAAATTCCTTAA  500

seq1  AGAAATACAGGAGAACACAGGTAAACAGGTAGAAGCATTATAGAGGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACAGGAGAACACAGGTAAACAGGTAGAAGCATTATAGAGGAAAC  550

seq1  ACAAAAATCCCTTAAAGAATTACAGAAAACA  581
      |||||||||||||||||||||||||||||||
seq2  ACAAAAATCCCTTAAAGAATTACAGAAAACA  581