BAC Information

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BAC

Clone NameB6Ng01-141I21
Chromosome10 (Build37)
Map Location 79,691,785 - 79,888,870
singlet/doubletdoublet
Overlap geneMum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a
Upstream geneAJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2
Downstream geneOnecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I21.bB6Ng01-141I21.g
ACCDH939984DH939985
length9181,026
definitionDH939984|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I21, 5' end.DH939985|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,887,954 - 79,888,870)(79,691,785 - 79,692,812)
sequence
gaattcactctgtagaccaggctggcctcaaactcagaaatccacctgcc
tctgcctcccaagtgctgggattaaaggtatgcaccaccgtctggctcgg
atcaactttaaaagacacattttaggccagttgtgggtgtatacctttaa
tctcagcactggggaggcagaggccagcctgttctacatggggaattcca
ggcctccagagtgctgtagtaagaccctgtctttaagaaaaagaaagaaa
agtacatcttttttgtttgttttgttttgtttcgagacagggtttctctg
tgtggccctgactgtcctggaactcactctgtagatcaggctggcctcga
actcagaaattcgactgcctctgcctcccaagtgctgggattaaaggcgt
gcaccaccacgtccggcagaaaaatacgtcttaagaagaatttctagctc
catattacatgatgacctgggatcacagagtcttgagtccccgtttctca
cagatgcaggacatagatgaagtagttactccagtaggagcctgaaactt
agggtttcttctcactgaatagggctgcccatacaccaccccacacaacc
cttgttggtttgtactcacacttttacataggaaggcttcactagcattt
tcatctctggagtaaaaagcggaagagcaggggacgctgagtcagacaac
agaagaacttggggaaggttcttacagtgaagaaatgcccccgagagctt
tccttctctaagaagctgtattgggggggtgtttcttttactttaggcat
ttcgtgtttttcctcatgtatatctgctgcacatgtggtcctcataccca
cagtggccagaagaggcgttcagatcccctgcatcttggatgggggtgct
ggggaactgatctggggc
gaattcttcctagatgttcagatactctcgctgaaggaaaagttaagtgt
gcttgtttttgtttttgttttcctaatactgtctctccccttctgtctga
ggtttctgatactcttctcacagaagaaagagaagcctgtttctgctggg
cttaggagttctctgcttctgtgtctccacgctgagaatcttagagggag
gacaatagattttatttgacacacatttcaggttggagattttagtctat
gaggtgcaggggagctgcaggaagcggggtctcaagggcagatagatagg
aattattcccagggatctatcctggggtctccgctcccaccaaggacttg
gttctgatctgcttgtgccagacccactgttccaagaagaaaaaagattt
tttttttttgtactggaaaggcagatgggcggcaggactctgttgtcttg
cacctggtgacccttaatgggtcaccagcaaggacaatgtgggtgtaggc
ctgtggtacggtccttccttctgaagagtccactggccgcttgtctcctg
ggtcccttcctgccactgtcttcagagccctccaccaggagagtccccag
cttcccactctccctgcggcagggaaggtaattgaatacttgagtttaaa
aggaaagcaagtcctttaaactaaaacgcgcctgctgggctgtaaacagc
tcttggtgacattagcggctactcggaaaacctaacaaaggagttatttt
gtgcagttgaaagtcgatttgcctcatgaaagtcccaatttgaatttatt
tttactcttaactccagccgaccttttctttcttaaagaggggcaaaatg
gaaaagagagggggcatacccactcttggtaggctgtccttgttctcttg
gcagcgtctgtccctgtccttcttcatggtgactttgggcgtgagtggaa
ggttgaagaggacatctggacagtgggttgcaggctgtggtgctgaccac
tcatttgtgctccaggatccaggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79887954_79888870
seq2: B6Ng01-141I21.b_48_965 (reverse)

seq1  GCCCCAGGATCAGTT-CCCAGCACCCACATACAAGATGCAGGGGATCTGA  49
      |||||| |||||||| |||||||||| ||| |||||||||||||||||||
seq2  GCCCCA-GATCAGTTCCCCAGCACCCCCATCCAAGATGCAGGGGATCTGA  49

seq1  TGCCCTCTTCTGGCCACCGTGGGTATGAGACACACATGTGAAGCAGATAT  99
         |||||||||||||| |||||||||||   |||||||| |||||||||
seq2  ACGCCTCTTCTGGCCACTGTGGGTATGAGGACCACATGTGCAGCAGATAT  99

seq1  ACATGCAGGAAAAACACGAAATGCATAAAGTAAAAGAAACACCCCCCCAA  149
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  ACATG-AGGAAAAACACGAAATGCCTAAAGTAAAAGAAACACCCCCCCAA  148

seq1  TACAGCTTCTTAGAGAAGG-AAGCTCTCGGGGGCATTTCTTCACTGTAAG  198
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACAGCTTCTTAGAGAAGGAAAGCTCTCGGGGGCATTTCTTCACTGTAAG  198

seq1  AACCTTCCCCAAGTTCTTCTGTTGTCTGACTCAGCGTCCCCTGCTCTTCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCCCAAGTTCTTCTGTTGTCTGACTCAGCGTCCCCTGCTCTTCC  248

seq1  GCTTTTTACTCCAGAGATGAAAATGCTAGTGAAGCCTTCCTATGT-AAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTTTTACTCCAGAGATGAAAATGCTAGTGAAGCCTTCCTATGTAAAAG  298

seq1  TGTGAGTACAAACCAACAAGGGTTGTGTGGGGTGGTGTATGGGCAGCCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTACAAACCAACAAGGGTTGTGTGGGGTGGTGTATGGGCAGCCCT  348

seq1  ATTCAGTGAGAAGAAACCCTAAGTTTCAGGCTCCTACTGGAGTAACTACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGAGAAGAAACCCTAAGTTTCAGGCTCCTACTGGAGTAACTACT  398

seq1  TCATCTATGTCCTGCATCTGTGAGAAACGGGGACTCAAGACTCTGTGATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATGTCCTGCATCTGTGAGAAACGGGGACTCAAGACTCTGTGATC  448

seq1  CCAGGTCATCATGTAATATGGAGCTAGAAATTCTTCTTAAGACGTATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCATCATGTAATATGGAGCTAGAAATTCTTCTTAAGACGTATTTT  498

seq1  TCTGCCGGACGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGGACGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAG  548

seq1  AGGCAGTCGAATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAGTGAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCGAATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAGTGAGTT  598

seq1  CCAGGACAGTCAGGGCCACACAGAGAAACCCTGTCTCGAAACAAAACAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGTCAGGGCCACACAGAGAAACCCTGTCTCGAAACAAAACAAA  648

seq1  ACAAACAAAAAAGATGTACTTTTCTTTCTTTTTCTTAAAGACAGGGTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAAGATGTACTTTTCTTTCTTTTTCTTAAAGACAGGGTCTT  698

seq1  ACTACAGCACTCTGGAGGCCTGGAATTCCCCATGTAGAACAGGCTGGCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCACTCTGGAGGCCTGGAATTCCCCATGTAGAACAGGCTGGCCT  748

seq1  CTGCCTCCCCAGTGCTGAGATTAAAGGTATACACCCACAACTGGCCTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCCAGTGCTGAGATTAAAGGTATACACCCACAACTGGCCTAAA  798

seq1  ATGTGTCTTTTAAAGTTGATCCGAGCCAGACGGTGGTGCATACCTTTAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTTTAAAGTTGATCCGAGCCAGACGGTGGTGCATACCTTTAAT  848

seq1  CCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGC  898

seq1  CTGGTCTACAGAGTGAATTC  917
      ||||||||||||||||||||
seq2  CTGGTCTACAGAGTGAATTC  918

seq1: chr10_79691785_79692812
seq2: B6Ng01-141I21.g_71_1096

seq1  GAATTCTTCCTAGATGTTCAGATACTCTCGCTGAAGGAAAAGTTAAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTAGATGTTCAGATACTCTCGCTGAAGGAAAAGTTAAGTGT  50

seq1  GCTTGTTTTTGTTTTTGTTTTCCTAATACTGTCTCTCCCCTTCTGTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTTTGTTTTTGTTTTCCTAATACTGTCTCTCCCCTTCTGTCTGA  100

seq1  GGTTTCTGATACTCTTCTCACAGAAGAAAGAGAAGCCTGTTTCTGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGATACTCTTCTCACAGAAGAAAGAGAAGCCTGTTTCTGCTGGG  150

seq1  CTTAGGAGTTCTCTGCTTCTGTGTCTCCACGCTGAGAATCTTAGAGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGTTCTCTGCTTCTGTGTCTCCACGCTGAGAATCTTAGAGGGAG  200

seq1  GACAATAGATTTTATTTGACACACATTTCAGGTTGGAGATTTTAGTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGATTTTATTTGACACACATTTCAGGTTGGAGATTTTAGTCTAT  250

seq1  GAGGTGCAGGGGAGCTGCAGGAAGCGGGGTCTCAAGGGCAGATAGATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCAGGGGAGCTGCAGGAAGCGGGGTCTCAAGGGCAGATAGATAGG  300

seq1  AATTATTCCCAGGGATCTATCCTGGGGTCTCCGCTCCCACCAAGGACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCCCAGGGATCTATCCTGGGGTCTCCGCTCCCACCAAGGACTTG  350

seq1  GTTCTGATCTGCTTGTGCCAGACCCACTGTTCCAAGAAGAAAAAAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATCTGCTTGTGCCAGACCCACTGTTCCAAGAAGAAAAAAGATTT  400

seq1  TTTTTTTTTGTACTGGAAAGGCAGATGGGCGGCAGGACTCTGTTGTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTACTGGAAAGGCAGATGGGCGGCAGGACTCTGTTGTCTTG  450

seq1  CACCTGGTGACCCTTAATGGGTCACCAGCAAGGACAATGTGGGTGTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTGACCCTTAATGGGTCACCAGCAAGGACAATGTGGGTGTAGGC  500

seq1  CTGTGGTACGGTCCTTCCTTCTGAAGAGTCCACTGGCCGCTTGTCTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTACGGTCCTTCCTTCTGAAGAGTCCACTGGCCGCTTGTCTCCTG  550

seq1  GGTCCCTTCCTGCCACTGTCTTCAGAGCCCTCCACCAGGAGAGTCCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTCCTGCCACTGTCTTCAGAGCCCTCCACCAGGAGAGTCCCCAG  600

seq1  CTTCCCACTCTCCCTGCGGCAGGGAAGGTAATTGAATACTTGAGTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACTCTCCCTGCGGCAGGGAAGGTAATTGAATACTTGAGTTTAAA  650

seq1  AGGAAAGCAAGTCCTTTAAACTAAAACGCGCCTGCTGGGCTGTAAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCAAGTCCTTTAAACTAAAACGCGCCTGCTGGGCTGTAAACAGC  700

seq1  TCTTGGTGACATTAGCGGCTACTCGGAAAACCTAACAAAGGAGTTA-TTT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTTGGTGACATTAGCGGCTACTCGGAAAACCTAACAAAGGAGTTATTTT  750

seq1  GTGCAGTTGAAAGTCGATTTGCCTCATGAAAGTCCCAATTTGAATTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTTGAAAGTCGATTTGCCTCATGAAAGTCCCAATTTGAATTTATT  800

seq1  TTTACTCTTAACTCCAGCCGACCTTTTCTTTCTTAAAAGAGGGGCAAAAA  849
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TTTACTCTTAACTCCAGCCGACCTTTTCTTTCTT-AAAGAGGGGC-AAAA  848

seq1  TGGAAAAGAGAGGGGGCATACCCAC-CCTGGTAGGCTGTCCCTGTTCCCT  898
      ||||||||||||||||||||||||| | ||||||||||||| ||||| ||
seq2  TGGAAAAGAGAGGGGGCATACCCACTCTTGGTAGGCTGTCCTTGTTCTCT  898

seq1  TGGCAGCGTCTGTCCCTGTCCTTCCTTCATGGTGACTTTGGGCGTGAGTG  948
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGCAGCGTCTGTCCCTGTCCTT-CTTCATGGTGACTTTGGGCGTGAGTG  947

seq1  GAAGGTTGAGAGGGACATCTGGACAGTTGGGTTGCAGGCTGTGGTGCTGA  998
      |||||||||   |||||||||||||| |||||||||||||||||||||||
seq2  GAAGGTTGAAGAGGACATCTGGACAG-TGGGTTGCAGGCTGTGGTGCTGA  996

seq1  CCACTCATTGTTGTCGCAGGATCCAGGTTA  1028
      |||||||||  ||   ||||||||||||||
seq2  CCACTCATTTGTGCTCCAGGATCCAGGTTA  1026