BAC Information

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BAC

Clone NameB6Ng01-141J03
Chromosome10 (Build37)
Map Location 113,971,971 - 114,129,460
singlet/doubletdoublet
Overlap geneTrhde
Upstream geneLOC100042655, LOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141J03.bB6Ng01-141J03.g
ACCDH939996DH939997
length676915
definitionDH939996|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J03, 5' end.DH939997|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,128,792 - 114,129,460)(113,971,971 - 113,972,884)
sequence
gaattctgctaaaaacagctttttaagaatgttcagaactcatagactaa
agtatatatcactttaataaagcaaattatctattagtgaaataatatat
taggagctttgaaattttcttcctggtaaaagtaatcatacatagccact
gcaagaaacatggaaagagtcgggcgtggtggcgcaggcctttaatccca
gcactgaggccagcctggtctacagagtgagttccaggacagccagggct
acacagagaagccctgtctcaaaaagcaaaaaaaaaaaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaacatggaaa
gaaaaactgaagaaacaagtctgaaaagtcgcagcagcaataccatgagg
acatacccaactcttgcaaacgcgttttcatcatagatgtttataagtta
attagatggcagataggatgactggcacaatattttgttactcaccttat
ttaggtttcaattaattatggcagatagtcttctgtttccctttgcggct
gctctgtaatttgtaaatcgatgtttcctaaaggagtttgcttgattgct
tcttattcaaggcacagcgcattttgccttttatggggaaattcattacc
ctgccccgccacaaaatgcgattggg
gaattcaataaaaaaattgaaaggattgattatccaatcaaaaattaaat
tacatttgatatcgtagaaaaactaaacagtaacaaatataccaatgatt
tgatctttaaagacatcaatatacagaatagaaaagtttaaaaatattag
gagaagacatgagagaatagctttataatttggtcataacaaatgacctt
aaaaactaaagtataatgtcgaaaaagaaaatggacagaccaaacctaaa
tttaaaaatctgtctgataaaagacacaaaaaattatttatcttactagc
aactaacaactagcttgaagaatacagaaagaaatctctctttactgatt
aaaaaggataagcaaactgattaaaaatacaaaaaaattactggaaaatt
gtaaatagatataaactggaaactcaagaaatattaaacacataaggaga
atttgatgaataagaaaatgtaaattaaaactgtataataataatgtaca
gccataaagcagctgaaataaagaaagtacttaataacagtgacaactta
gaatagggtcccctgatcttggtccgggacccgccgaacttaggaaatta
gtctgaacaggtgagagggtgcgccagagaacctgacagcttctggaaca
ggcagaagcacagaggcgctgaggcagcaccctgtgtgggccggggacag
ccggccaccttccggaccggaggacaggtgcccgcccggctggggaggcg
gcctaagccacagcagcagcggtcgccatcttggtccgagacccaccgaa
cttaggaaattagtctgaacaggtgagagggtgcgccagagaacctgaca
gcttctggaacaggcagaggcacagaggcgctgaggcagcaccctgtggt
gggccggggacagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114128792_114129460
seq2: B6Ng01-141J03.b_48_722 (reverse)

seq1  CCAATCGCATTCTGTGGC-GGGCA-GGTAATGAA-TTCCCCAT-AAAGGC  46
      ||||||||||| |||||| ||||| ||||||||| |||||||| ||||||
seq2  CCAATCGCATTTTGTGGCGGGGCAGGGTAATGAATTTCCCCATAAAAGGC  50

seq1  -AAATGCGCTGTGCCTTGAA-AAGAAGCAATCAAGCAAACTCCTTTAGGA  94
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAATGCGCTGTGCCTTGAATAAGAAGCAATCAAGCAAACTCCTTTAGGA  100

seq1  AACATCGATTTACAAATTACAGAGCAGCCGCAAAGGGAAACAGAAGACTA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCGATTTACAAATTACAGAGCAGCCGCAAAGGGAAACAGAAGACTA  150

seq1  TCTGCCATAATTAATTGAAACCTAAATAAGGTGAGTAACAAAATATTGTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATAATTAATTGAAACCTAAATAAGGTGAGTAACAAAATATTGTG  200

seq1  CCAGTCATCCTATCTGCCATCTAATTAACTTATAAACATCTATGATGAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCATCCTATCTGCCATCTAATTAACTTATAAACATCTATGATGAAA  250

seq1  ACGCGTTTGCAAGAGTTGGGTATGTCCTCATGGTATTGCTGCTGCGACTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGTTTGCAAGAGTTGGGTATGTCCTCATGGTATTGCTGCTGCGACTT  300

seq1  TTCAGACTTGTTTCTTCAGTTTTTCTTTCCATGTTTCTTTCTTTCTTTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTTGTTTCTTCAGTTTTTCTTTCCATGTTTCTTTCTTTCTTTCT  350

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTGC  400

seq1  TTTTTGAGACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  450

seq1  CTGTAGACCAGGCTGGCCTCAGTGCTGGGATTAAAGGCCTGCGCCACCAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACCAGGCTGGCCTCAGTGCTGGGATTAAAGGCCTGCGCCACCAC  500

seq1  GCCCGACTCTTTCCATGTTTCTTGCAGTGGCTATGTATGATTACTTTTAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGACTCTTTCCATGTTTCTTGCAGTGGCTATGTATGATTACTTTTAC  550

seq1  CAGGAAGAAAATTTCAAAGCTCCTAATATATTATTTCACTAATAGATAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAAAATTTCAAAGCTCCTAATATATTATTTCACTAATAGATAAT  600

seq1  TTGCTTTATTAAAGTGATATATACTTTAGTCTATGAGTTCTGAACATTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATTAAAGTGATATATACTTTAGTCTATGAGTTCTGAACATTCT  650

seq1  TAAAAAGCTGTTTTTAGCAGAATTC  669
      |||||||||||||||||||||||||
seq2  TAAAAAGCTGTTTTTAGCAGAATTC  675

seq1: chr10_113971971_113972884
seq2: B6Ng01-141J03.g_65_979

seq1  GAATTCAATAAAAAAATTGAAAGGATTGATTATCCAATCAAAAATTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAAAAATTGAAAGGATTGATTATCCAATCAAAAATTAAAT  50

seq1  TACATTTGATATCGTAGAAAAACTAAACAGTAACAAATATACCAATGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGATATCGTAGAAAAACTAAACAGTAACAAATATACCAATGATT  100

seq1  TGATCTTTAAAGACATCAATATACAGAATAGAAAAGTTTAAAAATATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTAAAGACATCAATATACAGAATAGAAAAGTTTAAAAATATTAG  150

seq1  GAGAAGACATGAGAGAATAGCTTTATAATTTGGTCATAACAAATGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACATGAGAGAATAGCTTTATAATTTGGTCATAACAAATGACCTT  200

seq1  AAAAACTAAAGTATAATGTCGAAAAAGAAAATGGACAGACCAAACCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAAGTATAATGTCGAAAAAGAAAATGGACAGACCAAACCTAAA  250

seq1  TTTAAAAATCTGTCTGATAAAAGACACAAAAAATTATTTATCTTACTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCTGTCTGATAAAAGACACAAAAAATTATTTATCTTACTAGC  300

seq1  AACTAACAACTAGCTTGAAGAATACAGAAAGAAATCTCTCTTTACTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACAACTAGCTTGAAGAATACAGAAAGAAATCTCTCTTTACTGATT  350

seq1  AAAAAGGATAAGCAAACTGATTAAAAATACAAAAAAATTACTGGAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGATAAGCAAACTGATTAAAAATACAAAAAAATTACTGGAAAATT  400

seq1  GTAAATAGATATAAACTGGAAACTCAAGAAATATTAAACACATAAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGATATAAACTGGAAACTCAAGAAATATTAAACACATAAGGAGA  450

seq1  ATTTGATGAATAAGAAAATGTAAATTAAAACTGTATAATAATAATGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGAATAAGAAAATGTAAATTAAAACTGTATAATAATAATGTACA  500

seq1  GCCATAAAGCAGCTGAAATAAAGAAAGTACTTAATAACAGTGACAACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAAGCAGCTGAAATAAAGAAAGTACTTAATAACAGTGACAACTTA  550

seq1  GAATAGGGTCCCCTGATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGGTCCCCTGATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTA  600

seq1  GTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACA  650

seq1  GGCAGAAGCACAGAGGCGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGCACAGAGGCGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAG  700

seq1  CCGGCCACCTTCCGGACCAGAGGACAGGTGCCCGCCCGGCTGGGGAGGCG  750
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCGGCCACCTTCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCG  750

seq1  GCCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAA  800
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  GCCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGAGACCCACCGAA  800

seq1  CTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCTCCAGAGAACCTGACA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACA  850

seq1  GCTTCTGGAACAGGCAGAAGCACAGAGGCGCTGAGGCAGCACCCTGT-GT  899
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GCTTCTGGAACAGGCAGAGGCACAGAGGCGCTGAGGCAGCACCCTGTGGT  900

seq1  GGGCCGGGGACAGCC  914
      |||||||||||||||
seq2  GGGCCGGGGACAGCC  915