BAC Information

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BAC

Clone NameB6Ng01-141N14
Chromosome10 (Build37)
Map Location 18,550,290 - 18,695,468
singlet/doubletdoublet
Overlap genePerp
Upstream geneTxlnb, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300
Downstream geneTnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N14.bB6Ng01-141N14.g
ACCDH940198DH940199
length6561,112
definitionDH940198|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N14, 5' end.DH940199|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,550,290 - 18,550,945)(18,694,349 - 18,695,468)
sequence
gaattccaagtgtagctgacctcaaattcagtcaaaagcagctgactatt
cccttaacggtcataaaactatcactccagtagcatattgctcagcaggt
cagtcatgtagcacaggaacttaagcctgtaatgatttttctctcccaga
acctgcaaggcacattccagcatcaggaaagccagccatcaggaaggaag
cgtccagatcagttgcagcactatgcttgattttgctctttcctgaagcc
aaagaacatggagttttcagtgaaagggtattcacatctggttctggtgg
gaaacacactgttaacagaataaaaatacaagtcacctacacatgtgtgt
gtgtatataatatatgtatctatggaacatgcagatgcagtgttctgaaa
gggactttaaaaacattaataaagagttgggtgtggtagtgcataccttt
aatcccagcacccaggaggcagaggcaggccaatctatgtgagttcgggg
ccagcctgctgttcaaagtgagttgctgtaggtctagggatatatgtagc
ttgtagtacatttatgaacacaccgaaacatattcactcacaatgtatat
gttaatacatgtgtgtgtgtgtgtatatatatatatatatatatatatat
atatat
gaattcatggccaatctagacaacagtaaaagtctgtcccttataaaatt
ggccaattgcttaactaattagttaaaattaaattaataaaaaaacctag
acatttcaccaaagatcagaaagaaggcacatgggtttatggaaaatgtt
cagatctgggactagtaagtggctcagggttaggtgttactgaagcattt
taaaggacctctcccaacccccaaccaagtaagccctcatgctgtgttag
aacagtgtccccaaactgaaaatgtagaaggcataccattaggtaccatc
ctctgggctttttcatttcatggtttgggccttggggtcacaataagcta
tggttatacaataatttggttcagtgaaagctgagtgaccgtaagcttgt
tcagtgagtaaaggtacttgctgccatgcctgatcacccgagtttgatcg
tgttcctgtctgacctctacccctgtgtgatggtttaaatatgcttggtc
cagtgagtgtcactagaaggtgaggccttgttggtgaaagtgtgtcattg
tgggcatgggctttaagatcctcttcctagctccctggaagccctggaag
ccagtcttctcctgtttgccttcggaacaagatgtagaactatcagctcc
tcctgcactatgcctgcctggaggctgccatgctcccacattgatgataa
tgggactgaacctctgaacctgtaagccagacccaattaaacgttgtact
tataagacttgtcttggtcatggtgtctgttcacagctgtaagaccttaa
caaagacatgcccacagccttatgatccttcaaaacacccaatgagtaag
tgtaataaaacatttttagaagaaactgaaagggggatcgttttctgctt
cgcatgcttcaaatataccaaaacatatgacttgcgtgtcattttgaaag
gagtatagaagtcaagaatagcaaatctttatgccaaaaaatcattgttg
cctagtttttgtttgttttgtctgaatgatggctatgggctttttctcta
ctttgggcatcttcttttcgagaaaaaaaagccttccgattaaacagttt
cccctactaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18550290_18550945
seq2: B6Ng01-141N14.b_48_703

seq1  GAATTCCAAGTGTAGCTGACCTCAAATTCAGTCAAAAGCAGCTGACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGTAGCTGACCTCAAATTCAGTCAAAAGCAGCTGACTATT  50

seq1  CCCTTAACGGTCATAAAACTATCACTCCAGTAGCATATTGCTCAGCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAACGGTCATAAAACTATCACTCCAGTAGCATATTGCTCAGCAGGT  100

seq1  CAGTCATGTAGCACAGGAACTTAAGCCTGTAATGATTTTTCTCTCCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGTAGCACAGGAACTTAAGCCTGTAATGATTTTTCTCTCCCAGA  150

seq1  ACCTGCAAGGCACATTCCAGCATCAGGAAAGCCAGCCATCAGGAAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAGGCACATTCCAGCATCAGGAAAGCCAGCCATCAGGAAGGAAG  200

seq1  CGTCCAGATCAGTTGCAGCACTATGCTTGATTTTGCTCTTTCCTGAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAGATCAGTTGCAGCACTATGCTTGATTTTGCTCTTTCCTGAAGCC  250

seq1  AAAGAACATGGAGTTTTCAGTGAAAGGGTATTCACATCTGGTTCTGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATGGAGTTTTCAGTGAAAGGGTATTCACATCTGGTTCTGGTGG  300

seq1  GAAACACACTGTTAACAGAATAAAAATACAAGTCACCTACACATGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACACTGTTAACAGAATAAAAATACAAGTCACCTACACATGTGTGT  350

seq1  GTGTATATAATATATGTATCTATGGAACATGCAGATGCAGTGTTCTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATAATATATGTATCTATGGAACATGCAGATGCAGTGTTCTGAAA  400

seq1  GGGACTTTAAAAACATTAATAAAGAGTTGGGTGTGGTAGTGCATACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTAAAAACATTAATAAAGAGTTGGGTGTGGTAGTGCATACCTTT  450

seq1  AATCCCAGCACCCAGGAGGCAGAGGCAGGCCAATCTATGTGAGTTCGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACCCAGGAGGCAGAGGCAGGCCAATCTATGTGAGTTCGGGG  500

seq1  CCAGCCTGCTGTTCAAAGTGAGTTGCTGTAGGTCTAGGGATATATGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGCTGTTCAAAGTGAGTTGCTGTAGGTCTAGGGATATATGTAGC  550

seq1  TTGTAGTACATTTATGAACACACCGAAACATATTCACTCACAATGTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTACATTTATGAACACACCGAAACATATTCACTCACAATGTATAT  600

seq1  GTTAATACATGTGTGTGTGTGTGTATATATATATATATATATATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATACATGTGTGTGTGTGTGTATATATATATATATATATATATATAT  650

seq1  ATATAT  656
      ||||||
seq2  ATATAT  656

seq1: chr10_18694349_18695468
seq2: B6Ng01-141N14.g_69_1180 (reverse)

seq1  AATTAGTGAGGGAAACTGTTTAATCTGAAGGTTTTTTTTTTCTTGGAAAG  50
      |||||||  |||||||||||||||| |||||  |||||||||| | ||||
seq2  AATTAGTAGGGGAAACTGTTTAATCGGAAGG-CTTTTTTTTCTCGAAAAG  49

seq1  ATGATGCCACAAAGTAGTGAAAAAGCCC-TAGACAATCATTCAGACAAAA  99
      | |||||| |||||||| |||||||||| ||| | |||||||||||||||
seq2  AAGATGCC-CAAAGTAGAGAAAAAGCCCATAG-CCATCATTCAGACAAAA  97

seq1  CAAAACAAAAACTAGGCAACAAATGATCTTTTTGGCATAGGGATTTGCTA  149
      | |||||||||||||||||| |||||| |||||||||||  |||||||||
seq2  C-AAACAAAAACTAGGCAAC-AATGAT-TTTTTGGCATAAAGATTTGCTA  144

seq1  TTCTTGGCTTCTGTGCTCCTTTCAAAATGGACATGCAAAGTCATATGGTT  199
      |||||| ||||| | ||||||||||||| |||| || ||||||||| |||
seq2  TTCTTGACTTCTATACTCCTTTCAAAAT-GACACGC-AAGTCATAT-GTT  191

seq1  TTGGTTTATTTGAAGCATTGGGATGCAG-AAACGATCCCCCTTTCAGTTT  248
      ||||| ||||||||||| || || |||| |||||||||||||||||||||
seq2  TTGGTATATTTGAAGCA-TGCGAAGCAGAAAACGATCCCCCTTTCAGTTT  240

seq1  TCTCTAAAAATGTTTTTATTACACTTACTCATTGGGTGTTTTGAGGGATC  298
        |||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  CTTCTAAAAATG-TTTTATTACACTTACTCATTGGGTGTTTTGAAGGATC  289

seq1  ATAAGGCTGTGGGCATGTCTTTGTTAAGGTCTTACAGCTGTGAACAGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTGTGGGCATGTCTTTGTTAAGGTCTTACAGCTGTGAACAGACA  339

seq1  CCATGACCAAGACAAGTCTTATAAGTACAACGTTTAATTGGGTCTGGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCAAGACAAGTCTTATAAGTACAACGTTTAATTGGGTCTGGCTT  389

seq1  ACAGGTTCAGAGGTTCAGT-CCATTATCATCAATGTGGGAGCATGGCAGC  447
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAGGTTCAGAGGTTCAGTCCCATTATCATCAATGTGGGAGCATGGCAGC  439

seq1  CTCCAGGCAGGCATAGTGCAGGAGGAGCTGATAGTTCTACATCTTGTTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCAGGCATAGTGCAGGAGGAGCTGATAGTTCTACATCTTGTTCC  489

seq1  GAAGGCAAACAGGAGAAGACTGGCTTCCAGGGCTTCCAGGGAGCTAGGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAACAGGAGAAGACTGGCTTCCAGGGCTTCCAGGGAGCTAGGAA  539

seq1  GAGGATCTTAAAGCCCATGCCCACAATGACACACTTTCACCAACAAGGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCTTAAAGCCCATGCCCACAATGACACACTTTCACCAACAAGGCC  589

seq1  TCACCTTCTAGTGACACTCACTGGACCAAGCATATTTAAACCATCACACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCTAGTGACACTCACTGGACCAAGCATATTTAAACCATCACACA  639

seq1  GGGGTAGAGGTCAGACAGGAACACGATCAAACTCGGGTGATCAGGCATGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGAGGTCAGACAGGAACACGATCAAACTCGGGTGATCAGGCATGG  689

seq1  CAGCAAGTACCTTTACTCACTGAACAAGCTTACGGTCACTCAGCTTTCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTACCTTTACTCACTGAACAAGCTTACGGTCACTCAGCTTTCAC  739

seq1  TGAACCAAATTATTGTATAACCATAGCTTATTGTGACCCCAAGGCCCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAAATTATTGTATAACCATAGCTTATTGTGACCCCAAGGCCCAAA  789

seq1  CCATGAAATGAAAAAGCCCAGAGGATGGTACCTAATGGTATGCCTTCTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATGAAAAAGCCCAGAGGATGGTACCTAATGGTATGCCTTCTAC  839

seq1  ATTTTCAGTTTGGGGACACTGTTCTAACACAGCATGAGGGCTTACTTGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTTTGGGGACACTGTTCTAACACAGCATGAGGGCTTACTTGGT  889

seq1  TGGGGGTTGGGAGAGGTCCTTTAAAATGCTTCAGTAACACCTAACCCTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTGGGAGAGGTCCTTTAAAATGCTTCAGTAACACCTAACCCTGA  939

seq1  GCCACTTACTAGTCCCAGATCTGAACATTTTCCATAAACCCATGTGCCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTACTAGTCCCAGATCTGAACATTTTCCATAAACCCATGTGCCTT  989

seq1  CTTTCTGATCTTTGGTGAAATGTCTAGGTTTTTTTATTAATTTAATTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATCTTTGGTGAAATGTCTAGGTTTTTTTATTAATTTAATTTTA  1039

seq1  ACTAATTAGTTAAGCAATTGGCCAATTTTATAAGGGACAGACTTTTACTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAGTTAAGCAATTGGCCAATTTTATAAGGGACAGACTTTTACTG  1089

seq1  TTGTCTAGATTGGCCATGAATTC  1120
      |||||||||||||||||||||||
seq2  TTGTCTAGATTGGCCATGAATTC  1112