BAC Information

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BAC

Clone NameB6Ng01-141N19
Chromosome10 (Build37)
Map Location 26,754,960 - 26,887,370
singlet/doubletdoublet
Overlap geneLama2
Upstream geneC030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N19.bB6Ng01-141N19.g
ACCDH940208DH940209
length9871,103
definitionDH940208|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N19, 5' end.DH940209|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,754,960 - 26,755,940)(26,886,269 - 26,887,370)
sequence
gaattcttgcatatagcactttaatcctctaggtatttaatatatactgc
agtgttttactataatcatattatttttaggctcaaatgcctggcgcggg
gggggggggaggctctgtatttttatgttgagaaatcccctactcttagt
ttattatttgtatactatctattcaggtttatataaaactatttcctgca
tttgcattgtatgttgtatatactttaaaatcctgtttgttctcatctcc
ttcttacatttaatgctatatatcatgatacttcttccaggattgactgg
gtacctgttatctctcccatcttaagcagcatctcaaagttctctgcagt
tatccccgtaagcatttgcaggaattcacatgtcaatttgaaaagtccta
caggaaaagtgatataagctaggtttctatatgtatacttaatcagcttg
tgggggtaactctccttataaaatgattataactagaagtcattaataga
taaccaaactcacatggcgatgaagaggaactcacagaggaagagactag
tcttaattgactgtgcttcaaatctctcatctgtgaagattttataaaaa
acacatagccatgtaaatatattgaagggcacttttcaagatcctttgga
aaatacctttcacagtttgagaagggagctgaaagtttcacctacttgat
aaatccaccagaagtacagtcaaacctatttttacgtcatgatagatgga
gatccagtaaaattcaaactgtgtgctgcacagatcctggtcttttcatc
tcaactcaccctgacagtactccccttacagtcgccttctttctcccgga
ggttccattaaccttataggtttgttgtcaaataagtttctcctcgtaca
gccggtgaaggtgatcaccgtacggcatcggtcttctgcagagagacgtg
ggacgtgtgggatttcagaatttcaggaattgcgtat
gaattcagattgtggccttaagatgagaatgaagcagatgaaatgttcac
atggcacaaggaagattttgttggttacagtcgtgtaagctagagaggcc
tgccttacaagaactgtgtcttttgtgatgcctgaacgaaatgttaaaaa
atgtcccggcagtgtatgatgaagttcagttactcctcactgtaagtctg
aaatgctacaacattacgttatattcattgggtagtgtagaagacatacg
aactacccataaaccagggcacaaggcaagcaagcaaatttcatatattc
taatgtactaatgaaaaaatactaatgtgtaacttctgtggatgtgttta
aacttattagacatcgacagtatataaatttccttatggaaaattattta
tgtaagcgaaaatactaagtatcctgtttcaaagcatattggctagtcat
atgacactttgtgtggcaaagtttccaaaatagccttacaatttatatgc
tttgtttatggaactttttatttccatattttatagaaatatggatatcc
atagtttatggatattttattcacttagccaagtatagcatgttagtata
tctgtgaaaattcaagaataattcagaaaaggtttaaatatgtttgtttt
tttggtaagcaaataatgaaaatttcagatgaataaaattaaaaacacag
tttaggggcctttgtatttttagcagtgttcattatatgtaagcaactga
tttcacttgttagtgttatatctacattatatataaaaatatatattttg
ttttgcaaaggccaaaatgctaaagactgttattgaataatttgtctttg
gggcattattatttctgtaattagaaaatgtaatcttcatgccttcccta
ggaaatgcattccttttaatagcttgttagacatttgagacaaaaaaccc
atatgcaatatctattttggaatcactgtctcagagtgctaccatgaagt
agggaatggctttgactgctagatatgtagattctttcatatagatcaga
gagaaggaagagttgggtggtttactcagtatcacaaaggaatcaagctc
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_26754960_26755940
seq2: B6Ng01-141N19.b_50_1036

seq1  GAATTCTTGCATATAGCACTTTAATCCTCTAGGTATTTAATATATACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATATAGCACTTTAATCCTCTAGGTATTTAATATATACTGC  50

seq1  AGTGTTTTACTATAATCATATTATTTTTAGGCTCAAATGCCTGGCGCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTACTATAATCATATTATTTTTAGGCTCAAATGCCTGGCGCGGG  100

seq1  GGGGGGGGGAGGCTCTGTATTTTTATGTTGAGAAATCCCCTACTCTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGAGGCTCTGTATTTTTATGTTGAGAAATCCCCTACTCTTAGT  150

seq1  TTATTATTTGTATACTATCTATTCAGGTTTATATAAAACTATTTCCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTGTATACTATCTATTCAGGTTTATATAAAACTATTTCCTGCA  200

seq1  TTTGCATTGTATGTTGTATATACTTTAAAATCCTGTTTGTTCTCATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTGTATGTTGTATATACTTTAAAATCCTGTTTGTTCTCATCTCC  250

seq1  TTCTTACATTTAATGCTATATATCATGATACTTCTTCCAGGATTGACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACATTTAATGCTATATATCATGATACTTCTTCCAGGATTGACTGG  300

seq1  GTACCTGTTATCTCTCCCATCTTAAGCAGCATCTCAAAGTTCTCTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTTATCTCTCCCATCTTAAGCAGCATCTCAAAGTTCTCTGCAGT  350

seq1  TATCCCCGTAAGCATTTGCAGGAATTCACATGTCAATTTGAAAAGTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCGTAAGCATTTGCAGGAATTCACATGTCAATTTGAAAAGTCCTA  400

seq1  CAGGAAAAGTGATATAAGCTAGGTTTCTATATGTATACTTAATCAGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGTGATATAAGCTAGGTTTCTATATGTATACTTAATCAGCTTG  450

seq1  TGGGGGTAACTCTCCTTATAAAATGATTATAACTAGAAGTCATTAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTAACTCTCCTTATAAAATGATTATAACTAGAAGTCATTAATAGA  500

seq1  TAACCAAACTCACATGGCGATGAAGAGGAACTCACAGAGGAAGAGACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAACTCACATGGCGATGAAGAGGAACTCACAGAGGAAGAGACTAG  550

seq1  TCTTAATTGACTGTGCTTCAAATCTCTCATCTGTGAAGATTTTATAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTGACTGTGCTTCAAATCTCTCATCTGTGAAGATTTTATAAAAA  600

seq1  ACACATAGCCATGTAAATATATTGAAGGGCACTTTTCAAGATCC-TTGGA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACACATAGCCATGTAAATATATTGAAGGGCACTTTTCAAGATCCTTTGGA  650

seq1  AAATACC-TTCACAG-TTGAGAAGGGAGCTG-AAGTTTCACCTACTTGAT  696
      ||||||| ||||||| ||||||||||||||| ||||||||||||||||||
seq2  AAATACCTTTCACAGTTTGAGAAGGGAGCTGAAAGTTTCACCTACTTGAT  700

seq1  AAATCCACCAGAAGTACAGTCAAACCTA-TTCTACGTCATGATAGATGGA  745
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  AAATCCACCAGAAGTACAGTCAAACCTATTTTTACGTCATGATAGATGGA  750

seq1  GATCCAGTAAAATTCAAACTGTGTGCTGCACAGA-CCTGGTCTTTTCATC  794
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATCCAGTAAAATTCAAACTGTGTGCTGCACAGATCCTGGTCTTTTCATC  800

seq1  TCAACTCA-CCTGACAGTACATCCCTTACAGTCGCCTTCTTTCTCCCGGA  843
      |||||||| |||||||||||  ||||||||||||||||||||||||||||
seq2  TCAACTCACCCTGACAGTACTCCCCTTACAGTCGCCTTCTTTCTCCCGGA  850

seq1  AGTTCCATAAACC-TATAGGTTTGTTGTCAAAGTATGTTTCTCC-CATAC  891
       ||||||| |||| |||||||||||||||||| || |||||||| | |||
seq2  GGTTCCATTAACCTTATAGGTTTGTTGTCAAA-TAAGTTTCTCCTCGTAC  899

seq1  AGCCGGTGAAGGTGATCACACGTACAGCATCGGCCTTCTGCAGAGAGACG  941
      ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
seq2  AGCCGGTGAAGGTGATCAC-CGTACGGCATCGGTCTTCTGCAGAGAGACG  948

seq1  TGGGACGTGTGGGATTTCAGGATTTCAGGAATTGCAGTAT  981
      |||||||||||||||||||| |||||||||||||| ||||
seq2  TGGGACGTGTGGGATTTCAGAATTTCAGGAATTGC-GTAT  987

seq1: chr10_26886269_26887370
seq2: B6Ng01-141N19.g_69_1171 (reverse)

seq1  AATGA-CTTGA-TGCATTGTGATACTGAGTTAAACACACCAACTC-TCCT  47
      ||||| ||||| | | |||||||||||||| || ||| ||||||| ||||
seq2  AATGAGCTTGATTCCTTTGTGATACTGAGTAAACCAC-CCAACTCTTCCT  49

seq1  TCTCT-TGA-CTATATGGAGGAATCTACATATCTTAGCAGTCAAAGCCAT  95
      ||||| ||| ||||||| | ||||||||||||| ||||||||||||||||
seq2  TCTCTCTGATCTATATGAAAGAATCTACATATC-TAGCAGTCAAAGCCAT  98

seq1  TCCCTACTTCATGGTAGCACTCTGAGACAGTGATTCCAAAATAAGATAAT  145
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  TCCCTACTTCATGGTAGCACTCTGAGACAGTGATTCCAAAAT-AGAT-AT  146

seq1  TGCATATGGGTTTTTTTGTCTCAAATTGTCTAACAAGCTATT-AAAGGAA  194
      |||||||||| |||||||||||||| |||||||||||||||| |||||||
seq2  TGCATATGGG-TTTTTTGTCTCAAA-TGTCTAACAAGCTATTAAAAGGAA  194

seq1  TGCATTTCCTAGGGAAGGCATGAAGATTACATTTTCTAATTACAGAAATA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCCTAGGGAAGGCATGAAGATTACATTTTCTAATTACAGAAATA  244

seq1  ATAATGCCCCAAAGACAAATTATTCAATAACAGTCTTTAGCATTTTGGCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCCCCAAAGACAAATTATTCAATAACAGTCTTTAGCATTTTGGCC  294

seq1  TTTGCAAAAC-AAATATATATTTTTATATATAATGTAGATATAACACTAA  343
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAACAAAATATATATTTTTATATATAATGTAGATATAACACTAA  344

seq1  CAAGTGAAATCAGTTGCTTACATATAATGAACACTGCTAAAAATACAAAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAAATCAGTTGCTTACATATAATGAACACTGCTAAAAATACAAAG  394

seq1  GCCCCTAAACTGTGTTTTTAATTTTATTCATCTGAAATTTTCATTATTTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTAAACTGTGTTTTTAATTTTATTCATCTGAAATTTTCATTATTTG  444

seq1  CTTACCAAAAAAACAAACATATTTAAACCTTTTCTGAATTATTCTTGAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAAAAAAACAAACATATTTAAACCTTTTCTGAATTATTCTTGAAT  494

seq1  TTTCACAGATATACTAACATGCTATACTTGGCTAAGTGAATAAAATATCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGATATACTAACATGCTATACTTGGCTAAGTGAATAAAATATCC  544

seq1  ATAAACTATGGATATCCATATTTCTATAAAATATGGAAATAAAAAGTTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATGGATATCCATATTTCTATAAAATATGGAAATAAAAAGTTCC  594

seq1  ATAAACAAAGCATATAAATTGTAAGGCTATTTTGGAAACTTTGCCACACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAGCATATAAATTGTAAGGCTATTTTGGAAACTTTGCCACACA  644

seq1  AAGTGTCATATGACTAGCCAATATGCTTTGAAACAGGATACTTAGTATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCATATGACTAGCCAATATGCTTTGAAACAGGATACTTAGTATTT  694

seq1  TCGCTTACATAAATAATTTTCCATAAGGAAATTTATATACTGTCGATGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTACATAAATAATTTTCCATAAGGAAATTTATATACTGTCGATGTC  744

seq1  TAATAAGTTTAAACACATCCACAGAAGTTACACATTAGTATTTTTTCATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTTTAAACACATCCACAGAAGTTACACATTAGTATTTTTTCATT  794

seq1  AGTACATTAGAATATATGAAATTTGCTTGCTTGCCTTGTGCCCTGGTTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTAGAATATATGAAATTTGCTTGCTTGCCTTGTGCCCTGGTTTA  844

seq1  TGGGTAGTTCGTATGTCTTCTACACTACCCAATGAATATAACGTAATGTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGTTCGTATGTCTTCTACACTACCCAATGAATATAACGTAATGTT  894

seq1  GTAGCATTTCAGACTTACAGTGAGGAGTAACTGAACTTCATCATACACTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTTCAGACTTACAGTGAGGAGTAACTGAACTTCATCATACACTG  944

seq1  CCGGGACATTTTTTAACATTTCGTTCAGGCATCACAAAAGACACAGTTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGACATTTTTTAACATTTCGTTCAGGCATCACAAAAGACACAGTTCT  994

seq1  TGTAAGGCAGGCCTCTCTAGCTTACACGACTGTAACCAACAAAATCTTCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCAGGCCTCTCTAGCTTACACGACTGTAACCAACAAAATCTTCC  1044

seq1  TTGTGCCATGTGAACATTTCATCTGCTTCATTCTCATCTTAAGGCCACAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCATGTGAACATTTCATCTGCTTCATTCTCATCTTAAGGCCACAA  1094

seq1  TCTGAATTC  1102
      |||||||||
seq2  TCTGAATTC  1103