BAC Information

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BAC

Clone NameB6Ng01-142G03
Chromosome18 (Build37)10 (Build37)
Map Location 49,554,306 - 49,554,85114,107,019 - 14,108,222
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142G03.bB6Ng01-142G03.g
ACCDH940594DH940595
length9761,179
definitionDH940594|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G03, 5' end.DH940595|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,554,306 - 49,554,851)(14,107,019 - 14,108,222)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatgtaacgagatgatcttgtagtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaatgaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagtattttattgaggatttttgc
atcgatatacataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtacaggactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagaccattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgatcttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcatttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgtgacccgtcctgcaggtctagtta
ttcgagggtctcgaggggacctcctcctaagaaccaaatggggggtagag
agagacgagggtcttgtacgaataac
gaattctgagaactcacagcaaattaatgaacacaaggaaggggtcatag
aaccctcatttatatctagttggacaggggggcagcaagagaattgaaac
ttgcacttggcacgagagattgggagagtgttaagggatcaagatcatga
tgaagttgaaccatgggtcaccacgttggtatctacagaggactggaatt
ccttggtgaggaaatcctgtgttttgttggtcaaaagtatcagcccattg
tcatataaaacaaaataggttttacttttatagtctctgtctatttatca
tttgcacagaaaaaaatataaccttgaataaaaaactaagataaatgtga
tcggatgcttatacttaggaatcagagttaaagtcccacagaaaacctgg
atgttattcttataacttgtatataaaatttaaattatttaaatgatcag
gttagcatattgagaatatagatttggcatagacactgcaaaatacaata
atttagtgctcaaatttgaacattatttcatggcaaagagtgggtgaata
acatttactttgcatgattaagaacccttaaaatcttagaatggatcaat
gcatattaaaatactcaaaaggataaattggtctttgatgcacacacaaa
gagaaacaaaacgcattaacaatatttacccttgagctttcttcttcctg
atagcattaattctcttatttcgatgtttctttttgtgattctataatta
gtaattactagtttcaatatttagtccttgggtttctccttttccccagt
cacaggaaagaaaaagagaatgaggagagaggccagaaagacagaaaaca
agaagaagagaaaggaagaggaggagattgggagagcctcagagagagag
aactaaaaggctgagatttggtatgcaagctgtgactgaggcagcagaaa
gtctgggctgtacagtatcactaatggcctcagctgtatcacccagctgt
ctaaagcaatatcactgttctgctctctagactttctaataaagtgtcac
tgaagctctgaggtgcactaatagaaaggaaggcctatgatgcacctacc
caaaatcgaatgatgtactggcccaaggaacaaactctggtgtaacgtga
gaaatgaatacagactgtatgtgatgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49554306_49554851
seq2: B6Ng01-142G03.b_39_584 (reverse)

seq1  TGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAA  50

seq1  ATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGA  100
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  ATAGAAGCAGTTATTAATGGTCTCCCAGCCAAAAAAAGCCCAGGACCAGA  100

seq1  TGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAA  150
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAG  150

seq1  TTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAAC  200
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAAC  200

seq1  TCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGACCC  250

seq1  AACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAA  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGTATATCGATGCAA  300

seq1  AAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCA  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATCCTCAATAAAATACTCGCTAACCGAATCCAAGAACACATTAAAGCA  350

seq1  ATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTT  400
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCATCCATCCTGACCAAGTAGGTTTCATTCCAGGGATGCAGGGATGGTT  400

seq1  TAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG  450

seq1  ACAAAAACTACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAG  500
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  ACAAAAACTACAAGATCATCTCGTTACATGCAGAAAAAGCATTTGACAAG  500

seq1  ATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  546

seq1: chr10_14107019_14108222
seq2: B6Ng01-142G03.g_67_1245 (reverse)

seq1  TTACATCTCACATCAAGTCTGTATTCATTCTTCACGTTTACACCACGGGG  50
      |||||  ||||||  ||||||||||||||  ||||| ||||||||  | |
seq2  TTACA--TCACATACAGTCTGTATTCATTTCTCACG-TTACACCA--GAG  45

seq1  TTGTGCTCCTTGTGGCAGTGACATCATTCTGGTTTTGTGTAGGTGCATCA  100
      || || |||||| | |||| ||||||||| | ||||| ||||||||||||
seq2  TT-TGTTCCTTGGGCCAGT-ACATCATTC-GATTTTGGGTAGGTGCATCA  92

seq1  TATGGCTTTCTGTCTGATTAGTTGCCACCTCAGAGC-TCAGTGACACTTT  149
      || | ||| || ||| ||||||   ||||||||||| |||||||||||||
seq2  TAGGCCTTCCTTTCT-ATTAGT--GCACCTCAGAGCTTCAGTGACACTTT  139

seq1  AATTAGAAAGTCTAGAGAGCAGAACAGTGATATTGCCTTTTAGACAGCTG  199
       |||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  -ATTAGAAAGTCTAGAGAGCAGAACAGTGATATTGC--TTTAGACAGCTG  186

seq1  GGTGATAACAGGCCTGAGGGCCATTAGTTGATACTGTACAAGCCCAGGAA  249
      |||||| ||||  |||| ||||||||| ||||||||||| |||||||  |
seq2  GGTGAT-ACAG--CTGA-GGCCATTAG-TGATACTGTAC-AGCCCAG--A  228

seq1  CTTTCCTGCTGGCCTCAGTCAACAGCTTGCATACCAAATCTCAGCCCTTT  299
      |||| ||||| ||||||||| ||||||||||||||||||||||| |||||
seq2  CTTT-CTGCT-GCCTCAGTC-ACAGCTTGCATACCAAATCTCAG-CCTTT  274

seq1  TAGTTCTCTCTCTCTGAGGCTCTCCCAATCTCCTCCTCTTCCTTTCTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCTCTCTCTGAGGCTCTCCCAATCTCCTCCTCTTCCTTTCTCTT  324

seq1  CTTCTTGTTTTCTGTCTTTCTGGCCTCTCTCCTCATTCTCTTTTTCTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTTTCTGTCTTTCTGGCCTCTCTCCTCATTCTCTTTTTCTTTC  374

seq1  CTGTGACTGGGGAAAAGGAGAAACCCAAGGACTAAATATTGAAACTAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTGGGGAAAAGGAGAAACCCAAGGACTAAATATTGAAACTAGTA  424

seq1  ATTACTAATTATAGAATCACAAAAAGAAACATCGAAATAAGAGAATTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAATTATAGAATCACAAAAAGAAACATCGAAATAAGAGAATTAAT  474

seq1  GCTATCAGGAAGAAGAAAGCTCAAGGGTAAATATTGTTAATGCGTTTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAGGAAGAAGAAAGCTCAAGGGTAAATATTGTTAATGCGTTTTGT  524

seq1  TTCTCTTTGTGTGTGCATCAAAGACCAATTTATCCTTTTGAGTATTTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGTGTGTGCATCAAAGACCAATTTATCCTTTTGAGTATTTTAA  574

seq1  TATGCATTGATCCATTCTAAGATTTTAAGGGTTCTTAATCATGCAAAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTGATCCATTCTAAGATTTTAAGGGTTCTTAATCATGCAAAGTA  624

seq1  AATGTTATTCACCCACTCTTTGCCATGAAATAATGTTCAAATTTGAGCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTCACCCACTCTTTGCCATGAAATAATGTTCAAATTTGAGCAC  674

seq1  TAAATTATTGTATTTTGCAGTGTCTATGCCAAATCTATATTCTCAATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTGTATTTTGCAGTGTCTATGCCAAATCTATATTCTCAATATG  724

seq1  CTAACCTGATCATTTAAATAATTTAAATTTTATATACAAGTTATAAGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGATCATTTAAATAATTTAAATTTTATATACAAGTTATAAGAAT  774

seq1  AACATCCAGGTTTTCTGTGGGACTTTAACTCTGATTCCTAAGTATAAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAGGTTTTCTGTGGGACTTTAACTCTGATTCCTAAGTATAAGCA  824

seq1  TCCGATCACATTTATCTTAGTTTTTTATTCAAGGTTATATTTTTTTCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCACATTTATCTTAGTTTTTTATTCAAGGTTATATTTTTTTCTGT  874

seq1  GCAAATGATAAATAGACAGAGACTATAAAAGTAAAACCTATTTTGTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGATAAATAGACAGAGACTATAAAAGTAAAACCTATTTTGTTTTA  924

seq1  TATGACAATGGGCTGATACTTTTGACCAACAAAACACAGGATTTCCTCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAATGGGCTGATACTTTTGACCAACAAAACACAGGATTTCCTCAC  974

seq1  CAAGGAATTCCAGTCCTCTGTAGATACCAACGTGGTGACCCATGGTTCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATTCCAGTCCTCTGTAGATACCAACGTGGTGACCCATGGTTCAA  1024

seq1  CTTCATCATGATCTTGATCCCTTAACACTCTCCCAATCTCTCGTGCCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCATGATCTTGATCCCTTAACACTCTCCCAATCTCTCGTGCCAAG  1074

seq1  TGCAAGTTTCAATTCTCTTGCTGCCCCCCTGTCCAACTAGATATAAATGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTTCAATTCTCTTGCTGCCCCCCTGTCCAACTAGATATAAATGA  1124

seq1  GGGTTCTATGACCCCTTCCTTGTGTTCATTAATTTGCTGTGAGTTCTCAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTATGACCCCTTCCTTGTGTTCATTAATTTGCTGTGAGTTCTCAG  1174

seq1  AATTC  1204
      |||||
seq2  AATTC  1179