BAC Information

Click to search

BAC

Clone NameB6Ng01-143H06
Chromosome10 (Build37)
Map Location 58,147,308 - 58,309,830
singlet/doubletdoublet
Overlap geneLOC624335, LOC100039099
Upstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar
Downstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143H06.bB6Ng01-143H06.g
ACCDH941384DH941385
length1,1251,047
definitionDH941384|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H06, 5' end.DH941385|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,308,713 - 58,309,830)(58,147,308 - 58,148,368)
sequence
gaattcaacaaagagaacccagaagggacaggaaagagaagcagacccac
accacagccagcatctcttccccttccccacagcggaatcttctgtgtct
aaattcttgggtcaaagagatgacatgcataattggtgagagtggtcaca
atagttactgaatatttaaaagcttaaactatccaaatacaagatgcccc
cgagaacctatagtgcaggagaccgtcactaaggtctcaccacaaagatc
aaggagcacatggatgaatgacacccttcctccatcacattgattatgtt
gtatctagtgggggcagtcttgctcaacagagccctgctacctgtaacag
ggaagattcataaagacttctacaacttaaacaagggagataaaaatgtg
ataatttcccatctgagaaattaaagaagttgatgccgtatatcatgtag
atatcaaaggacttcactgaaagtgctgcttcatatttctttatatcaca
agctccaatataaaacaaacaaacaaacaaacaaacaaacaaaaacaaac
ccacaccaaacaattcatgctagcacttaactcaaattccataaaatggt
ttttatacaattcggctttcttccactagttagttggctactgtcctgta
agttttcaatatttagcactatgccctgcaagagaataggtacccagaac
attcaaatgatcttgatggactcaagtgagttttcctagtaagacagaaa
gagaacggacctcaagccgagaggggatttctcctgctatagaacgcaga
tgatcgcctgcaccatatggattctttctaatgcttctgcttcaatacat
tgcacgtgatccaggtaaatgaggtatgccaattgaggtctccaaggacc
tccaagacataattcagatgcaactacagcaggaactgggcttatttcag
agaaaactgtgccctctcccttgtttgttctcctggtaagaccctgggtg
gagcatggaacaaaaggattggactggagaatctggcttccctttcaagg
gtggcccagtctgctgtgtcttgcaaggtcaggaagctaacttcttttgg
tttcttgcaaccaattgagacaaaa
gaattcagaaataggagtctattttctcgctagacggttgaggggtttaa
ctgccttttgtgccccgagatgggtttccttcccccaattttggcttagt
ctgcttaaacagaaaatggggagctcacaggcctacagcttcagataaac
acgttcaaggccagctttgaacacagctgaccaaccaggagtggggtata
ctggtaggagaaaatgtctgccagacctttgtcccaggtcaggagggtga
ataaaaagcttatctgtggcccctttcccctcctgtctgtctgtctgtat
gtatgtctgtttgtgtgtgtctgtctatctgtctgtatgtccaggatatg
tctgactccgagtctctcactcccatcctctggtcccaccatctttccca
gagcacaatggatgaatgtgtatactggggacacaggatgtcttaggagc
tgctgttctattcttccagctactggtctgaaaataaaggtagcctgacc
tgagcgcaaaggatcatggtataaagggctaaagcatatccagagaacac
actgcattctcaacaatggtgctcatttaacagatatatgaagaggcagg
atccgggttggctggatgccttaagggtccagagacctggttgtgagacc
tttgctttgtgttcacgttggctaactcggcacatctcactgtgcatttg
tgtatgactaatggctattgtcttgtgcaagattgaacccgaattttaca
atgagatggttgtttctagtcttactctgccagattgtggctttcctgaa
catcctgaaattattcttacctaagtccccagggacctcgtattaccaaa
accaacagataccttttagtctttattttcctgtaacctgtctttcttct
aattttggggcacctgaaagcagatctttttttctttttcttaattaatt
aattttttacattctatattccattcctgcccggcttctactttcacagt
tcacatcccaaacctcttccccacctaccattctctgtgtgatgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_58308713_58309830
seq2: B6Ng01-143H06.b_46_1170 (reverse)

seq1  TTTTGTCTCATTGTGTTGCATGGAAACAAAGAAGGTTAGCTTCCTGA-CT  49
      |||||||||| |  |||||| | || ||||  | ||||||||||||| ||
seq2  TTTTGTCTCAATTGGTTGCAAGAAACCAAAAGAAGTTAGCTTCCTGACCT  50

seq1  TGC-AGACACCAGCAGAACTGGG-CACCCTTGAAAGGGAAGGCAGATTTC  97
      ||| ||||| |||||| |||||| ||||||||||||||||| ||||||  
seq2  TGCAAGACA-CAGCAG-ACTGGGCCACCCTTGAAAGGGAAGCCAGATTCT  98

seq1  TCAGTCC-ATCCTTTTGTTCATTGCTC--ACCAGGGTCTTACCAGGAGAA  144
       |||||| ||||||||||||  |||||   ||||||||||||||||||||
seq2  CCAGTCCAATCCTTTTGTTCCATGCTCCACCCAGGGTCTTACCAGGAGAA  148

seq1  CAAACAAGGGAGAGGGCACAG-TTTCTCTGAAAT-AGGCCAGTTCCTGCT  192
      ||||||||||||||||||||| |||||||||||| || ||||||||||||
seq2  CAAACAAGGGAGAGGGCACAGTTTTCTCTGAAATAAGCCCAGTTCCTGCT  198

seq1  GTAGTTGCATCTGAATTATGTCTTGGAGGTCTTTGGAGACTTC-ATTGGC  241
      ||||||||||||||||||||||||||||||| |||||||| || ||||||
seq2  GTAGTTGCATCTGAATTATGTCTTGGAGGTCCTTGGAGACCTCAATTGGC  248

seq1  ATACCTCATTTACCTGGATCACGTGCACTGTATTGAAGCAGAAGCATTAG  291
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATACCTCATTTACCTGGATCACGTGCAATGTATTGAAGCAGAAGCATTAG  298

seq1  AAAGAATCCATATGGTGCAGGCGATCATCTGCGTTCTATAGCAGGAGAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCCATATGGTGCAGGCGATCATCTGCGTTCTATAGCAGGAGAAA  348

seq1  TCCCCTCTCGGCTTGAGGTCCGTTCTCTTTCTGTCTTACTAGGAAAACTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCGGCTTGAGGTCCGTTCTCTTTCTGTCTTACTAGGAAAACTC  398

seq1  ACTTGAGTCCATCAAGATCATTTGAATGTTCTGGGTACCTATTCTCTTGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTCCATCAAGATCATTTGAATGTTCTGGGTACCTATTCTCTTGC  448

seq1  AGGGCATAGTGCTAAATATTGAAAACTTACAGGACAGTAGCCAACTAACT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATAGTGCTAAATATTGAAAACTTACAGGACAGTAGCCAACTAACT  498

seq1  AGTGGAAGAAAGCCGAATTGTATAAAAACCATTTTATGGAATTTGAGTTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGAAAGCCGAATTGTATAAAAACCATTTTATGGAATTTGAGTTA  548

seq1  AGTGCTAGCATGAATTGTTTGGTGTGGGTTTGTTTTTGTTTGTTTGTTTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGCATGAATTGTTTGGTGTGGGTTTGTTTTTGTTTGTTTGTTTG  598

seq1  TTTGTTTGTTTGTTTTATATTGGAGCTTGTGATATAAAGAAATATGAAGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTATATTGGAGCTTGTGATATAAAGAAATATGAAGC  648

seq1  AGCACTTTCAGTGAAGTCCTTTGATATCTACATGATATACGGCATCAACT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTCAGTGAAGTCCTTTGATATCTACATGATATACGGCATCAACT  698

seq1  TCTTTAATTTCTCAGATGGGAAATTATCACATTTTTATCTCCCTTGTTTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATTTCTCAGATGGGAAATTATCACATTTTTATCTCCCTTGTTTA  748

seq1  AGTTGTAGAAGTCTTTATGAATCTTCCCTGTTACAGGTAGCAGGGCTCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGAAGTCTTTATGAATCTTCCCTGTTACAGGTAGCAGGGCTCTG  798

seq1  TTGAGCAAGACTGCCCCCACTAGATACAACATAATCAATGTGATGGAGGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAAGACTGCCCCCACTAGATACAACATAATCAATGTGATGGAGGA  848

seq1  AGGGTGTCATTCATCCATGTGCTCCTTGATCTTTGTGGTGAGACCTTAGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTCATTCATCCATGTGCTCCTTGATCTTTGTGGTGAGACCTTAGT  898

seq1  GACGGTCTCCTGCACTATAGGTTCTCGGGGGCATCTTGTATTTGGATAGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTCTCCTGCACTATAGGTTCTCGGGGGCATCTTGTATTTGGATAGT  948

seq1  TTAAGCTTTTAAATATTCAGTAACTATTGTGACCACTCTCACCAATTATG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTTTAAATATTCAGTAACTATTGTGACCACTCTCACCAATTATG  998

seq1  CATGTCATCTCTTTGACCCAAGAATTTAGACACAGAAGATTCCGCTGTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATCTCTTTGACCCAAGAATTTAGACACAGAAGATTCCGCTGTGG  1048

seq1  GGAAGGGGAAGAGATGCTGGCTGTGGTGTGGGTCTGCTTCTCTTTCCTGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGAAGAGATGCTGGCTGTGGTGTGGGTCTGCTTCTCTTTCCTGT  1098

seq1  CCCTTCTGGGTTCTCTTTGTTGAATTC  1118
      |||||||||||||||||||||||||||
seq2  CCCTTCTGGGTTCTCTTTGTTGAATTC  1125

seq1: chr10_58147308_58148368
seq2: B6Ng01-143H06.g_68_1114

seq1  GAATTCAGAAATAGGAGTCTATTTTCTCGCTAGACGGTTGAGGGGTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATAGGAGTCTATTTTCTCGCTAGACGGTTGAGGGGTTTAA  50

seq1  CTGCCTTTTGTGCCCCGAGATGGGTTTCCTTCCCCCAATTTTGGCTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTGTGCCCCGAGATGGGTTTCCTTCCCCCAATTTTGGCTTAGT  100

seq1  CTGCTTAAACAGAAAATGGGGAGCTCACAGGCCTACAGCTTCAGATAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAAACAGAAAATGGGGAGCTCACAGGCCTACAGCTTCAGATAAAC  150

seq1  ACGTTCAAGGCCAGCTTTGAACACAGCTGACCAACCAGGAGTGGGGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCAAGGCCAGCTTTGAACACAGCTGACCAACCAGGAGTGGGGTATA  200

seq1  CTGGTAGGAGAAAATGTCTGCCAGACCTTTGTCCCAGGTCAGGAGGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGGAGAAAATGTCTGCCAGACCTTTGTCCCAGGTCAGGAGGGTGA  250

seq1  ATAAAAAGCTTATCTGTGGCCCCTTTCCCCTCCTGTCTGTCTGTCTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCTTATCTGTGGCCCCTTTCCCCTCCTGTCTGTCTGTCTGTAT  300

seq1  GTATGTCTGTTTGTGTGTGTCTGTCTATCTGTCTGTATGTCCAGGATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTGTTTGTGTGTGTCTGTCTATCTGTCTGTATGTCCAGGATATG  350

seq1  TCTGACTCCGAGTCTCTCACTCCCATCCTCTGGTCCCACCATCTTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCCGAGTCTCTCACTCCCATCCTCTGGTCCCACCATCTTTCCCA  400

seq1  GAGCACAATGGATGAATGTGTATACTGGGGACACAGGATGTCTTAGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAATGGATGAATGTGTATACTGGGGACACAGGATGTCTTAGGAGC  450

seq1  TGCTGTTCTATTCTTCCAGCTACTGGTCTGAAAATAAAGGTAGCCTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTATTCTTCCAGCTACTGGTCTGAAAATAAAGGTAGCCTGACC  500

seq1  TGAGCGCAAAGGATCATGGTATAAAGGGCTAAAGCATATCCAGAGAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGCAAAGGATCATGGTATAAAGGGCTAAAGCATATCCAGAGAACAC  550

seq1  ACTGCATTCTCAACAATGGTGCTCATTTAACAGATATATGAAGAGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTCTCAACAATGGTGCTCATTTAACAGATATATGAAGAGGCAGG  600

seq1  ATCCGGGTTGGCTGGATGCCTTAAGGGTCCAGAGACCTGGTTGTGAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGGTTGGCTGGATGCCTTAAGGGTCCAGAGACCTGGTTGTGAGACC  650

seq1  -TTGCTTTGTGTTCACGTTGGCTAACTCGGCACATCTCACTGTGCATTTG  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGTGTTCACGTTGGCTAACTCGGCACATCTCACTGTGCATTTG  700

seq1  TGTATGACTAATGGCTATTGTCTTGTGCAAGATTGAA-CCGAATTTTACA  748
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTATGACTAATGGCTATTGTCTTGTGCAAGATTGAACCCGAATTTTACA  750

seq1  ATGAGATGGTTGTATCTAGTCTTTACTCTGCCAGATTGTGGCTTTCCCTG  798
      ||||||||||||| ||||||| ||||||||||||||||||||||| ||||
seq2  ATGAGATGGTTGTTTCTAGTC-TTACTCTGCCAGATTGTGGCTTT-CCTG  798

seq1  AACATTCTGAAATTATTCTTACCTAAGTCACCAGGGACCTCGTAATTACC  848
      ||||| ||||||||||||||||||||||| ||||||||||||| ||||||
seq2  AACATCCTGAAATTATTCTTACCTAAGTCCCCAGGGACCTCGT-ATTACC  847

seq1  AAAACCAACAGATACCTTTTAGTCTTTATTTTCCTGTACCCTGTCTTTCT  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAACCAACAGATACCTTTTAGTCTTTATTTTCCTGTAACCTGTCTTTCT  897

seq1  TCTTAATTTTGGGGCACCTGAAAGCAGATCTTTTTTTTTCTTTTTTCTTT  948
      || |||||||||||||||||||||||||||  |||||||||||||   ||
seq2  TC-TAATTTTGGGGCACCTGAAAGCAGATC--TTTTTTTCTTTTT--CTT  942

seq1  AATTAATTTAATTTTTACATTCTATATTCCATTCCCTGCCCCGGCATCTA  998
      |||||||| | |||||||||||||||||||||| |||| |||||| ||||
seq2  AATTAATTAATTTTTTACATTCTATATTCCATT-CCTG-CCCGGCTTCTA  990

seq1  CCTTCCAACAGTTCCACATCCCAAACCTCTTCACCACCACACCCTATCTC  1048
      | |||  |||||| |||||||||||||||||| |||||  ||| | ||||
seq2  CTTTC--ACAGTT-CACATCCCAAACCTCTTCCCCACC-TACCAT-TCTC  1035

seq1  TGTGTGGATGCCC  1061
      ||||| |||||||
seq2  TGTGT-GATGCCC  1047