BAC Information

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BAC

Clone NameB6Ng01-143I06
Chromosome10 (Build37)12 (Build37)
Map Location 95,581,293 - 95,582,36555,390,535 - 55,390,770
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1
Downstream geneEG432491, LOC667380, Btg1, LOC628256, 4930556N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I06.bB6Ng01-143I06.g
ACCDH941431DH941432
length1,059911
definitionDH941431|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I06, 5' end.DH941432|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,581,293 - 95,582,365)(55,390,535 - 55,390,770)
sequence
gaattcattttccacatcttcattttatattctttagtggaaagacaatg
aataatttttttcataattgtcaaggctacaactttaaaagttatcaaga
tactgtcacttataaagccatgaatataataaatgagaatttagaggaaa
caagaagaactagatgctgttgtgtagacagtaagcttctagttataaag
acacatcattactgttagtctgggttgtaacatatatttatgtgctaggt
cactcagcaaaagagcatgaactattttcttgatttccacataattatct
aaattgcacaatgttaatcttcaggactttatgggatatagtttacttac
tttggctccattcttgcgtataatatgaacgaaaatgcaagatatgaaaa
ttagtccatgaaacaagtaagccattctgcatttcccatatctgaagaac
aaaccagcattcaagttggccccaaatctctgcagagtggagtagaagga
gagacaggggccactaagggtaacagtgggagtgattgctactatctgga
taactaacttctcctgttgttatgacagtttctgacaacagccagctaaa
aagggaagggtttatcttggctcacagtttgatggtaccgtctatcctgg
tgtggaaagcatcatggggtggttggaacaacttgtcactttgtatctgt
gatcaggaagctgagggagttggacactgggtcccagctgggtcccagtg
accccttctgttttcatttagtcccagaccccatcctatgaaatactgcc
agcacccttcacggtgaatctcctccactaaatatttctggaaacaccat
catagttataccagagaagtgtttccatggtgattctgaacctagttagt
ggataacgaaggttacccaccacattctaagtcatgcatgcttgctgcca
aacctctgctgggtgcatttatacctgcctcagatatacagctctgcaga
gtgccattttttccctctgtctgagcctaggatggtaacccaagctgaaa
tgactcaaa
gaattctccttaatagggacggggtttcgttttctctctctcttgcttct
tgctctcttgcttcttgcactctggctcctgaagatgtaagcaataaagc
tttgccgcagaagattctggtctgtggtgttcttcctggccgggcgtgag
aacgcgtctaataacaattggtgccgaattccgggacgagaaaaaactcg
ggactggcgcaaggaagatccctcattccagaaccagaactgcgggtcgc
ggtaataaaggttcccgtaaagcagactgttaagaaggattcaactgtat
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaattttttctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggaaaa
ttctagaggaaattcaggacaagctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagtttaggtcaggtaagaatacctggg
gagagattagaaggaaggaaaagaaaaaagaaaagaaaaaagatcgacta
gcggaggtctctaggagatactcgtcactagatgagctcaggaagccagc
tcttagtagttctgaagcagatgaagaattctcctctgaggaaacagact
gggaggaagaagcagcccattaccagccagctaattggtcaagaaaaaag
ccaaaagcggctggcgaaagccagcgtactgttcaacctcccggcagtcg
gtttcaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_95581293_95582365
seq2: B6Ng01-143I06.b_45_1103

seq1  GAATTCATTTTCCACATCTTCATTTTATATTCTTTAGTGGAAAGACAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCCACATCTTCATTTTATATTCTTTAGTGGAAAGACAATG  50

seq1  AATAATTTTTTTCATAATTGTCAAGGCTACAACTTTAAAAGTTATCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTTTCATAATTGTCAAGGCTACAACTTTAAAAGTTATCAAGA  100

seq1  TACTGTCACTTATAAAGCCATGAATATAATAAATGAGAATTTAGAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCACTTATAAAGCCATGAATATAATAAATGAGAATTTAGAGGAAA  150

seq1  CAAGAAGAACTAGATGCTGTTGTGTAGACAGTAAGCTTCTAGTTATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAACTAGATGCTGTTGTGTAGACAGTAAGCTTCTAGTTATAAAG  200

seq1  ACACATCATTACTGTTAGTCTGGGTTGTAACATATATTTATGTGCTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCATTACTGTTAGTCTGGGTTGTAACATATATTTATGTGCTAGGT  250

seq1  CACTCAGCAAAAGAGCATGAACTATTTTCTTGATTTCCACATAATTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCAAAAGAGCATGAACTATTTTCTTGATTTCCACATAATTATCT  300

seq1  AAATTGCACAATGTTAATCTTCAGGACTTTATGGGATATAGTTTACTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCACAATGTTAATCTTCAGGACTTTATGGGATATAGTTTACTTAC  350

seq1  TTTGGCTCCATTCTTGCGTATAATATGAACGAAAATGCAAGATATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCCATTCTTGCGTATAATATGAACGAAAATGCAAGATATGAAAA  400

seq1  TTAGTCCATGAAACAAGTAAGCCATTCTGCATTTCCCATATCTGAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCATGAAACAAGTAAGCCATTCTGCATTTCCCATATCTGAAGAAC  450

seq1  AAACCAGCATTCAAGTTGGCCCCAAATCTCTGCAGAGTGGAGTAGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCATTCAAGTTGGCCCCAAATCTCTGCAGAGTGGAGTAGAAGGA  500

seq1  GAGACAGGGGCCACTAAGGGTAACAGTGGGAGTGATTGCTACTATCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGGCCACTAAGGGTAACAGTGGGAGTGATTGCTACTATCTGGA  550

seq1  TAACTAACTTCTCCTGTTGTTATGACAGTTTCTGACAACAGCCAGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACTTCTCCTGTTGTTATGACAGTTTCTGACAACAGCCAGCTAAA  600

seq1  AAGGGAAGGGTTTATCTTGGCTCACAGTTTGATGGTACCGTCTATCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGGTTTATCTTGGCTCACAGTTTGATGGTACCGTCTATCCTGG  650

seq1  TGTGGAAAGCATCATGGGGTGGTTGGAACAACTTGTCACTTTGTATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGCATCATGGGGTGGTTGGAACAACTTGTCACTTTGTATCTGT  700

seq1  GATCAGGAAGCTGAGGGAGTTGGACACTGGGTCCCAGCTGGGTCCCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAAGCTGAGGGAGTTGGACACTGGGTCCCAGCTGGGTCCCAGTG  750

seq1  ACCCCTTCTGTTTTCATTTAGTCCCAGACCCCATCCTATGAAATACTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTCTGTTTTCATTTAGTCCCAGACCCCATCCTATGAAATACTGCC  800

seq1  AGCACCCTTCAGGGTGAATCTCCTCCACTAAATATTTCTGGAAACACCAT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTTCACGGTGAATCTCCTCCACTAAATATTTCTGGAAACACCAT  850

seq1  CATAGTTATACCAGAGAAGTGTTTCCATGGTGATTCTGAACCTAGTTAGG  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATAGTTATACCAGAGAAGTGTTTCCATGGTGATTCTGAACCTAGTTA-G  899

seq1  TGGATAACGAAGGTTACCCACCACATTCTAAGTCATGCATGCTTGCTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACGAAGGTTACCCACCACATTCTAAGTCATGCATGCTTGCTGCC  949

seq1  AAACCCTCTGCTGGGTGCATTTATACCTTGCCCTCAAGATTAATACCAGC  1000
      ||| ||||||||||||||||||||||||   |||| ||||  ||| ||||
seq2  AAA-CCTCTGCTGGGTGCATTTATACCT--GCCTC-AGAT--ATA-CAGC  992

seq1  TCTGCAGAGTTGCCATTTTTTCCCTCCTGTCTGAGCCTTAAGGATGGTAA  1050
      ||||||||| ||||||||||||||| ||||||||||||  |||||||| |
seq2  TCTGCAGAG-TGCCATTTTTTCCCT-CTGTCTGAGCCT--AGGATGGT-A  1037

seq1  ACCCAAGGCTGAAATGACTCAAA  1073
      |||||| ||||||||||||||||
seq2  ACCCAA-GCTGAAATGACTCAAA  1059

seq1: chr12_55390535_55390770
seq2: B6Ng01-143I06.g_71_231 (reverse)

seq1  TGTTATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAG  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTATTAGACGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAG  50

seq1  AATCTTCTGCGGCAAAGCTTTATT-CTTACATCTTCAGGA-AAAGAGAGC  98
      |||||||||||||||||||||||| |||||||||||||||   |||| ||
seq2  AATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGC  100

seq1  AAGAAGCAAGAGAGCGAAGCAAGAGAGAGAGAAAAGCAAGAGAGCGAAAA  148
      |||||||||||||||                                   
seq2  AAGAAGCAAGAGAGC-----------------------------------  115

seq1  AGCAAGAGAGCGAAGCAAGAGAGCGAAGCAAGAGAAGAGAGAGAGAGACA  198
                                      |||||           ||
seq2  -------------------------------AAGAAG-----------CA  123

seq1  AGAGAGAGAGAGAACGAAACCCCGTCCCTCTTAAGGAG  236
      ||||||||||| ||||||||||||||||| ||||||||
seq2  AGAGAGAGAGAAAACGAAACCCCGTCCCTATTAAGGAG  161