BAC Information

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BAC

Clone NameB6Ng01-143J23
Chromosome10 (Build37)13 (Build37)
Map Location 107,744,609 - 107,745,743110,632,507 - 110,632,636
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLin7a, Myf5, Myf6, Ptprq, EG628870, Ppp1r12a
Downstream genePawr, EG667814, Syt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143J23.bB6Ng01-143J23.g
ACCDH941511DH941512
length1,133399
definitionDH941511|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J23, 5' end.DH941512|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,744,609 - 107,745,743)(110,632,507 - 110,632,636)
sequence
gaattcctgatgagggcagaacagactcttggtctcatcctaagtagtaa
aggttagcctttcagcctgaaactccacggccattgttaaatatggttta
gccttttaccacgtggcagctgctctcccgtggtcagatgtagtaaatgg
tcaatattatgctgatttcacaagggagacttgaagtacaataaactagg
ctatggattggaaccctgttctaaataagaccaaataatgaaagcataac
tctgccgcgcggatgtattcctttgtaatcaaagccagtgcttgtggaag
ggacctccgggtggcagccacttgcctcccgtgttcctccgtgtctctga
tgtatggaaacaggcgctgctctttaattgcctgcgatgtaagctgtgcc
agcaaggtgaatcacaagacaatgaaatgcttcatgtggctttagagctg
ccaagctcttgagcctcggggcaaatgcattcctgcccagtgaggtgtta
cgtggtggtgtatccatttctacagttatagaaaagcacctttcctatag
ccgatgttgcccttcccattaatcaagcagacagccttgatatcatcctt
caatccattcttctctcctgcacaggcagatctctagccgtgtctttcta
gataaacacttctcatatgttgaaaaaaaaaaaaaaaagctcaggtctgg
tcttttgtagttcatagtctgtttatatgtctcctcagatttcccgggtg
tatcttagcaaatatgctgggtctttttctttcctatttaaaagacatcc
cataagagcattctgggttggaagctgatcagtttagagttgaaatgtaa
gtcaagatatagtggtgcatgcctttaatccaacacttaaaaggcagagg
taggtggattttttgtgagttcagccagcctggtttacaaagtgaatcca
ggacagcaggactagtgtattcttagtatacacacgattctggccttttg
tgagatgttaggatacaataacatgaaaatgaaaagaaaaaagatctatg
ttggcttaaagaatttaagaacagtgtacatggagaaacactaactgaat
gctcttgcttggccttacccctctcatactact
gaattctcatgttggctttcttctgactagtgaagtgagggctattatgg
ttggaaaggccaaatggaagcctttagagttgcctctgccaaagaaaata
gtgactcaaaaacagtatcgtattcctggaggagttgcagaaattactgc
cactatcaaggacttgaaagatgcaagggtggtggttcccaccacatctc
cctttaagtctcctatctggccagtgaagaagacagatggagaatgacag
ttgactattgagctgggcgtggtggcgcacgcctttaatcccagcactcg
gaaggcagaggcaggcagatttctgagttcaaagccagcctggtctacaa
agtgagttccaggacagccagggctatacagagaaaccctgtctcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_107744609_107745743
seq2: B6Ng01-143J23.b_46_1178

seq1  GAATTCCTGATGAGGGCAGAACAGACTCTTGGTCTCATCCTAAGTAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATGAGGGCAGAACAGACTCTTGGTCTCATCCTAAGTAGTAA  50

seq1  AGGTTAGCCTTTCAGCCTGAAACTCCACGGCCATTGTTAAATATGGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCCTTTCAGCCTGAAACTCCACGGCCATTGTTAAATATGGTTTA  100

seq1  GCCTTTTACCACGTGGCAGCTGCTCTCCCGTGGTCAGATGTAGTAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTACCACGTGGCAGCTGCTCTCCCGTGGTCAGATGTAGTAAATGG  150

seq1  TCAATATTATGCTGATTTCACAAGGGAGACTTGAAGTACAATAAACTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTATGCTGATTTCACAAGGGAGACTTGAAGTACAATAAACTAGG  200

seq1  CTATGGATTGGAACCCTGTTCTAAATAAGACCAAATAATGAAAGCATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGATTGGAACCCTGTTCTAAATAAGACCAAATAATGAAAGCATAAC  250

seq1  TCTGCCGCGCGGATGTATTCCTTTGTAATCAAAGCCAGTGCTTGTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGCGCGGATGTATTCCTTTGTAATCAAAGCCAGTGCTTGTGGAAG  300

seq1  GGACCTCCGGGTGGCAGCCACTTGCCTCCCGTGTTCCTCCGTGTCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCGGGTGGCAGCCACTTGCCTCCCGTGTTCCTCCGTGTCTCTGA  350

seq1  TGTATGGAAACAGGCGCTGCTCTTTAATTGCCTGCGATGTAAGCTGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAAACAGGCGCTGCTCTTTAATTGCCTGCGATGTAAGCTGTGCC  400

seq1  AGCAAGGTGAATCACAAGACAATGAAATGCTTCATGTGGCTTTAGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTGAATCACAAGACAATGAAATGCTTCATGTGGCTTTAGAGCTG  450

seq1  CCAAGCTCTTGAGCCTCGGGGCAAATGCATTCCTGCCCAGTGAGGTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTCTTGAGCCTCGGGGCAAATGCATTCCTGCCCAGTGAGGTGTTA  500

seq1  CGTGGTGGTGTATCCATTTCTACAGTTATAGAAAAGCACCTTTCCTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGTGTATCCATTTCTACAGTTATAGAAAAGCACCTTTCCTATAG  550

seq1  CCGATGTTGCCCTTCCCATTAATCAAGCAGACAGCCTTGATATCATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGTTGCCCTTCCCATTAATCAAGCAGACAGCCTTGATATCATCCTT  600

seq1  CAATCCATTCTTCTCTCCTGCACAGGCAGATCTCTAGCCGTGTCTTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCATTCTTCTCTCCTGCACAGGCAGATCTCTAGCCGTGTCTTTCTA  650

seq1  GATAAACACTTCTCATATGTTG-AAAAAAAAAAAAAAAGCTCAGGTCTGG  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATAAACACTTCTCATATGTTGAAAAAAAAAAAAAAAAGCTCAGGTCTGG  700

seq1  TCTTTTGTAGTTCATAGTCTGTTTATATGTCTCCTCAGA-TTCCCGGGTG  748
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTTTGTAGTTCATAGTCTGTTTATATGTCTCCTCAGATTTCCCGGGTG  750

seq1  TATCTTAGCAAATATGCTGGGTCTTTT--CTTCCTATTTAAAAGACATCC  796
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  TATCTTAGCAAATATGCTGGGTCTTTTTCTTTCCTATTTAAAAGACATCC  800

seq1  CATAAGAGCATTCT-GGTTGGAAGCTGATCAGTTTAGAGTTGAAATGTAA  845
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATAAGAGCATTCTGGGTTGGAAGCTGATCAGTTTAGAGTTGAAATGTAA  850

seq1  GTCAAGATATAGTGGTGCATGCCTTTAATCCCAACACTTAAAAGGCAGAG  895
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCAAGATATAGTGGTGCATGCCTTTAAT-CCAACACTTAAAAGGCAGAG  899

seq1  GTAGGTGGA-TCTTTGTGAGTTCAAGGCCAGCCTGGTTTACAAAGTGAAT  944
      ||||||||| | ||||||||||||  ||||||||||||||||||||||||
seq2  GTAGGTGGATTTTTTGTGAGTTCA--GCCAGCCTGGTTTACAAAGTGAAT  947

seq1  CCAGGACAGCCAGGACTAGTGTATCTTAAGTATACACACGATTCTGGCCC  994
      ||||||||| ||||||||||||||  | ||||||||||||||||||||| 
seq2  CCAGGACAG-CAGGACTAGTGTATTCTTAGTATACACACGATTCTGGCCT  996

seq1  TCTGTGAGATGTTAGGATACAATAACATGAAAAATGAAAAAGAAAAAGAT  1044
      | ||||||||||||||||||||||||||| ||||||||||  ||||||||
seq2  TTTGTGAGATGTTAGGATACAATAACATG-AAAATGAAAAGAAAAAAGAT  1045

seq1  CTATGTTGGCCTTAAAAGAATTTAAAGAACAGTGTACATGGAGAACAACT  1094
      ||||||||||  | ||||||||| |||||||||||||||||||||  |||
seq2  CTATGTTGGC--TTAAAGAATTT-AAGAACAGTGTACATGGAGAAACACT  1092

seq1  AACTGATTGCTTCTTGCCCTGGGGCCTTACACCTC----ACTACT  1135
      |||||| ||| ||||||     |||||||| ||||    ||||||
seq2  AACTGAATGC-TCTTGC---TTGGCCTTACCCCTCTCATACTACT  1133

seq1: chr13_110632507_110632636
seq2: B6Ng01-143J23.g_338_467 (reverse)

seq1  TTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTT  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  50

seq1  TGTAGATCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCC  100
      |||||| ||||||||| ||||||||||||||| |||||||||||||| ||
seq2  TGTAGACCAGGCTGGCTTTGAACTCAGAAATCTGCCTGCCTCTGCCTTCC  100

seq1  GAGTGCTGGGATTAAAAGCGTGCACCACCA  130
      |||||||||||||||| |||||| ||||||
seq2  GAGTGCTGGGATTAAAGGCGTGCGCCACCA  130