BAC Information

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BAC

Clone NameB6Ng01-144K17
Chromosome3 (Build37)10 (Build37)
Map Location 19,280,886 - 19,281,780104,054,225 - 104,054,305
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
Downstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144K17.bB6Ng01-144K17.g
ACCDH942285DH942286
length1,0761,027
definitionDH942285|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K17, 5' end.DH942286|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,280,886 - 19,281,780)(104,054,225 - 104,054,305)
sequence
gaattcagggatggttcaatatggaaatccatcagtgtaatccactatat
aagcaaactcaaagggaaaaaacacattataatcttattagatgctgaaa
aagactttgacaaaatacaatacccttaaaagtattgtagagatcagaaa
ttataagtccatacctaaatatactaaaaacaatatacagcaaaccaata
gccaacaacaaactaaatggagagaaactcaaagcaatactattaaaatt
agggacaagataaggcagcccattctcttccaacctattcaatatagtac
tcaaagttctagccagagcaattagataacaaaaggagatcaaaggaata
caaatcgggaaaaaaggaagtcaacataatactatctgtttgtggatatt
atgatagtatgcataagcaaccccaaatattctaccagagagctcctaca
gctaataacttcagcaaagtggctggctataagattaactctaacaaaac
agtagccttcctctactcaaagtataaatgggtagagaaataaactaggg
aacaacacccttcacaatagtaaaaaataatacaaaatatattggtgtga
ccctaacctagcaagtgaaagatctatacaagaacttcaagtctctgaag
aaagaaatcaaggaagatctcagaagatggaaaggtctccataagtcttg
gatttctaaaagatatctcaatagaaacactgctaacatttttggagcag
gttattctttgcagtgggatgttttgtgcattgtaggatgtctatcatct
ctacccagttaactctggaagcactttttcccaacagaatcatcccagtt
tcgaaacatgttcagtgttagattataaatgatgggcaaacgaatcacca
atacgttggtcatatctctgtcactgtggcaaacactgagatatatcagc
ctaaagtgtggaagtgtatttgtccacagttgctttaggtcttatggtga
ggtagtgcatcatgagggggatgcagagagtcgctatcattccatggtgg
ctaggatgacagcggaggaggttcag
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagtag
ggtagagtaccttctacttctatcttgtgaaatagcttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataagcttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttaatttcaccccctgagtttgatta
ttttcctgccgtctactcctcttgggtgaatttgcttctttttttctaga
gctttagatgtgttgtaagctgctagtatgtgctctctcccgttcagcac
cttaatcatcaaggaattgcaaatcaaacaaccctgagttcacctccatc
agtcagaatggctaaaaatcaaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19280886_19281780
seq2: B6Ng01-144K17.b_239_1121

seq1  ACCAATAGCCAACAACAAACTAAATGGAGAGAAACTCAAAGCAATACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAGCCAACAACAAACTAAATGGAGAGAAACTCAAAGCAATACTAT  50

seq1  TAAAATTAGGGACAAGATAAGGCAGCCCATTCTCTTCCAACCTATTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAGGGACAAGATAAGGCAGCCCATTCTCTTCCAACCTATTCAAT  100

seq1  ATAGTACTCAAAGTTCTAGCCAGAGCAATTAGATAACAAAAGGAGATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACTCAAAGTTCTAGCCAGAGCAATTAGATAACAAAAGGAGATCAA  150

seq1  AGGAATACAAATCGGGAAAAAAGGAAGTCAACATAATACTATCTGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATACAAATCGGGAAAAAAGGAAGTCAACATAATACTATCTGTTTGT  200

seq1  GGATATTATGATAGTATGCATAAGCAACCCCAAATATTCTACCAGAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTATGATAGTATGCATAAGCAACCCCAAATATTCTACCAGAGAGC  250

seq1  TCCTACAGCTAATAACTTCAGCAAAGTGGCTGGCTATAAGATTAACTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGCTAATAACTTCAGCAAAGTGGCTGGCTATAAGATTAACTCTA  300

seq1  ACAAAACAGTAGCCTTCCTCTACTCAAAGTATAAATGGGTAGAGAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGTAGCCTTCCTCTACTCAAAGTATAAATGGGTAGAGAAATAA  350

seq1  ACTAGGGAACAACACCCTTCACAATAGTAAAAAATAATACAAAATATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGAACAACACCCTTCACAATAGTAAAAAATAATACAAAATATATT  400

seq1  GGTGTGACCCTAACCTAGCAAGTGAAAGATCTATACAAGAACTTCAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACCCTAACCTAGCAAGTGAAAGATCTATACAAGAACTTCAAGTC  450

seq1  TCTGAAGAAAGAAATCAAGGAAGATCTCAGAAGATGGAAAGGTCTCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAAAGAAATCAAGGAAGATCTCAGAAGATGGAAAGGTCTCCATA  500

seq1  AGTCTTGGATTTCTAAAAGATATCTCAATAGAAACACTGCTAACATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGATTTCTAAAAGATATCTCAATAGAAACACTGCTAACATTTTT  550

seq1  GGAGCAGGTTATTCTTTGCAGTGGGATGTTTTGTGCATTGTAGGATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGTTATTCTTTGCAGTGGGATGTTTTGTGCATTGTAGGATGTCT  600

seq1  ATCATCTCTACCCAGTTAACTCTGGAAGCACTTTTTCCCAACAGAATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTACCCAGTTAACTCTGGAAGCACTTTTTCCCAACAGAATCAT  650

seq1  CCCAGTTTCGAAACATGTTCAGTGTTAGATTATAAATGATGGGCAAACGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTCGAAACATGTTCAGTGTTAGATTATAAATGATGGGCAAACGA  700

seq1  ATCACCAATACGTTGGTCATATCTCTGTCACTGTGGCAAACACCTGAGAT  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCACCAATACGTTGGTCATATCTCTGTCACTGTGGCAAACA-CTGAGAT  749

seq1  ATATCAGCCTAAAGTGTGGAAGGTGTATTTGTCCACAGTTGCTTTAGGGC  800
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  ATATCAGCCTAAAGTGTGGAA-GTGTATTTGTCCACAGTTGCTTTAGGTC  798

seq1  CTATGGTGAGGTAGTGCATCATGGAAGGGGGATGCAGAAGAGCCGCTAAT  850
       ||||||||||||||||||||||  |||||||||||| |||| |||||  
seq2  TTATGGTGAGGTAGTGCATCATG--AGGGGGATGCAG-AGAGTCGCTA--  843

seq1  TCATCCCATGGTGGCTAGGAAATGACAGCGAGAGGAAGGGTTCAG  895
      |||| ||||||||||||||  ||||||||| |||||  |||||||
seq2  TCATTCCATGGTGGCTAGG--ATGACAGCG-GAGGA--GGTTCAG  883

seq1: chr10_104054225_104054305
seq2: B6Ng01-144K17.g_1015_1092 (reverse)

seq1  AATTTTTGA-TCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGT  49
      ||||||||| | |||||||||||||||| || ||||||  | ||||||||
seq2  AATTTTTGATTTTTAGCCATTCTGACTGATG-GAGGTG--AACTCAGGGT  47

seq1  TGTTTTGATTTGCATTTCCCTGATGATTAAGG  81
      || ||||||||||| |||| ||||||||||||
seq2  TG-TTTGATTTGCAATTCCTTGATGATTAAGG  78