BAC Information

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BAC

Clone NameB6Ng01-144L19
Chromosome10 (Build37)
Map Location 67,689,320 - 67,814,644
singlet/doubletdoublet
Overlap geneArid5b, LOC100040136
Upstream geneJmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
Downstream gene1700040L02Rik, EG665342, Tmem26, A930033H14Rik, Rhobtb1, LOC100040182, Cdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144L19.bB6Ng01-144L19.g
ACCDH942335DH942336
length1,1941,029
definitionDH942335|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L19, 5' end.DH942336|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,689,320 - 67,690,539)(67,813,420 - 67,814,644)
sequence
gaattccatgctttcatgaactttaccactggcactgccttggggagaca
ttgtcttatatgaactggcttgattgaccgcattgtctccgtctgtgacc
atgaatagtggaactaggcagagagtcgacatttcatgaaaaaagttcta
tcatttgtgatttaaaattgccaactctctttttggctcgtaggctatac
tctaagaatataatatgaaaatatttctgtgataagctagggacacccaa
tgagaagatgaaaggcctgatgccttgaggtggaacggatagccatttgt
tgccagaactcacatcagcatgagaaatctcatagttttgcatcaaccta
aaaccccccaaaatccaaatgaataaatcacaaaagagccttaagctaaa
ctattatcgtctctgcatctcagtagactctccagagtctgagctgttca
cagagaagcgaatagttatgtgtggcctctgccagctcttgataggaaac
atcatgatatttctcaaatttgtttttatttatttattccgaagagcagg
gtgaacctggagccttgggtgagcttcaaaagccctctaccacttagctc
cactccctacccgccatgaggtatttatcagagacacagagaggtcattt
ccatctagaaagaagagtctgacccaagtctacgccccttcaataaaatc
caagtcagaaatgaccatgacaccctccaccgatagcaatatacttacag
taaaagggacgcatgggacatgggagggaagtcctccttagtaaaccatc
acgtacgtgagaccgctacagagagactcggctcacgactcttgctctaa
gcacggatacagttgctttctgacaggacatgtttatggattcttctttt
cacgattacagtctcactaaaggctaccttacaactgtacctgtctgctg
tactcacatgagactctgccccagagtgagtgatgcctgagctcataaaa
acgctgtttctgcttcaaaataaagctgggctgctaaacatctctctgtt
tctctgtcaaatctctctagcccagtctcatactctgaagcggttcctta
gtcatcagaatagaagcagtcagaagctgaatgagacttagatagtagat
aactacaggtattccacacatggcctcaatataaaattatagcg
gaattcaaaagggaatgtttgtggctgggttttttttttttttttttaaa
tacagtacaaactattttgagattggtaatcattcgtctctgtggacagg
gctattttccccttgggatcatatttttaaaatcaagcaaacataccaaa
gtcaatttgattttctgattgttctccgggatgaaatgtattaccaccca
aatgaaccctgaaaaagggtatttcaatggctgttcccagatctatgaac
cctgggatggaactgtgccttttgcccattttttgtgtttatgagtgctt
cacagggcttagcctaaagctcaaaccctgttaaagttcaataaaccttt
gttgaacgacggaatgaaaatgccttccaaggagataaaaatggctttca
ggctcgcccatccacatgtgttctttacctgaggaaagccagtcttctca
aggagagcaataaatgcctaagtctgaaaaagaaaagaatatcatgttcc
agtcattatgtcccaagtgttcacggcccaatgagcctcactaagtaaaa
ccctgcagggtaaaaacagtttttcctcaggagaatctttggtacatatt
ctcctccatgttttgctaaggtcctgggatatagcagctgacaactctta
acaaccttagagaactcccgacgatgcaagagttaaaatatcactggacc
aagctttcatcccgaagaaattaagtatagcgactcattttcttagggtt
caaaatggctcatgatgacataaaatccagaagaacccctaagggttctg
atgtactttggttctcctagaagcacaccccgaggccacttgagggcaag
cagttagtttgagaggcacagaaaaattctagttgtggggtcaaaaaatg
agatgagacataggaagcgccctctaccggatgtgtgtcgatcggctacc
accgatcgcagcacctggatatatttacaaaggagacttcggggatcaga
acatacgcccagaattattccatcagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_67689320_67690539
seq2: B6Ng01-144L19.b_46_1239

seq1  GAATTCCATGCTTTCATGAACTTTACCACTGGCACTGCCTTGGGGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTTTCATGAACTTTACCACTGGCACTGCCTTGGGGAGACA  50

seq1  TTGTCTTATATGAACTGGCTTGATTGACCGCATTGTCTCCGTCTGTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATATGAACTGGCTTGATTGACCGCATTGTCTCCGTCTGTGACC  100

seq1  ATGAATAGTGGAACTAGGCAGAGAGTCGACATTTCATGAAAAAAGTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGTGGAACTAGGCAGAGAGTCGACATTTCATGAAAAAAGTTCTA  150

seq1  TCATTTGTGATTTAAAATTGCCAACTCTCTTTTTGGCTCGTAGGCTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTGATTTAAAATTGCCAACTCTCTTTTTGGCTCGTAGGCTATAC  200

seq1  TCTAAGAATATAATATGAAAATATTTCTGTGATAAGCTAGGGACACCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAATATAATATGAAAATATTTCTGTGATAAGCTAGGGACACCCAA  250

seq1  TGAGAAGATGAAAGGCCTGATGCCTTGAGGTGGAACGGATAGCCATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGATGAAAGGCCTGATGCCTTGAGGTGGAACGGATAGCCATTTGT  300

seq1  TGCCAGAACTCACATCAGCATGAGAAATCTCATAGTTTTGCATCAACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAACTCACATCAGCATGAGAAATCTCATAGTTTTGCATCAACCTA  350

seq1  AAACCCCCCAAAATCCAAATGAATAAATCACAAAAGAGCCTTAAGCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCCAAAATCCAAATGAATAAATCACAAAAGAGCCTTAAGCTAAA  400

seq1  CTATTATCGTCTCTGCATCTCAGTAGACTCTCCAGAGTCTGAGCTGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATCGTCTCTGCATCTCAGTAGACTCTCCAGAGTCTGAGCTGTTCA  450

seq1  CAGAGAAGCGAATAGTTATGTGTGGCCTCTGCCAGCTCTTGATAGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCGAATAGTTATGTGTGGCCTCTGCCAGCTCTTGATAGGAAAC  500

seq1  ATCATGATATTTCTCAAATTTGTTTTTATTTATTTATTCCGAAGAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATATTTCTCAAATTTGTTTTTATTTATTTATTCCGAAGAGCAGG  550

seq1  GTGAACCTGGAGCCTTGGGTGAGCTTCAAAAGCCCTCTACCACTTAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCTGGAGCCTTGGGTGAGCTTCAAAAGCCCTCTACCACTTAGCTC  600

seq1  CACTCCCTACCCGCCATGAGGTATTTATCAGAGACACAGAGAGGTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTACCCGCCATGAGGTATTTATCAGAGACACAGAGAGGTCATTT  650

seq1  CCATCTAGAAAGAAGAGTCTGACCCAAGTCTACGCCCCTTCAATAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGAAAGAAGAGTCTGACCCAAGTCTACGCCCCTTCAATAAAATC  700

seq1  CAAGTCAGAAATGACCATGACACCCTCCACCGATAGCAATATACTTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGAAATGACCATGACACCCTCCACCGATAGCAATATACTTACAG  750

seq1  TAAAAGGGACGCATGGGACATGGGAGGGAAGTCCTCCTTAGTAAACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGACGCATGGGACATGGGAGGGAAGTCCTCCTTAGTAAACCATC  800

seq1  ACGTACGTGAGACCGCTACAGAGAGACTCGGCTCACGACTCTTGCTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACGTGAGACCGCTACAGAGAGACTCGGCTCACGACTCTTGCTCTAA  850

seq1  GCACGGATACAGTTGCTTTCTGACAGGACATGTTTTATGGATTCTTC-TT  899
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  GCACGGATACAGTTGCTTTCTGACAGGACATG-TTTATGGATTCTTCTTT  899

seq1  TCACGATTACAGTCTCACTAAAGGCTACCTTACAACTGTACCTGTCTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATTACAGTCTCACTAAAGGCTACCTTACAACTGTACCTGTCTGCT  949

seq1  GTACTCCACATGAGACTCTGCCCCCAGAGTGAGTGATGCCTGAGCCTCAT  999
      ||||| |||||||||||||| ||||||||||||||||||||||| |||||
seq2  GTACT-CACATGAGACTCTG-CCCCAGAGTGAGTGATGCCTGAG-CTCAT  996

seq1  AAAAACGCTGTTTCTGCTTCAAAATAAAAGCCTGGGCTGCTAAACATCTT  1049
      ||||||||||||||||||||||||||||   ||||||||||||||||| |
seq2  AAAAACGCTGTTTCTGCTTCAAAATAAA--GCTGGGCTGCTAAACATC-T  1043

seq1  CTCCTGTCTTCTCCTGTCCAAATCTCTCCTAGCCCAGTCTCACAACTCTG  1099
      || |||| |||| |||| ||||||||| ||||||||||||||  ||||||
seq2  CT-CTGT-TTCT-CTGT-CAAATCTCT-CTAGCCCAGTCTCA-TACTCTG  1087

seq1  AAGCGGTTCCCTAAGGTCATCAAGAATAG-AGCAGGTCAAGAGAGTTGGA  1148
      |||||||||| ||  |||||| ||||||| |||| ||| ||| || | ||
seq2  AAGCGGTTCCTTA--GTCATC-AGAATAGAAGCA-GTC-AGA-AGCT-GA  1130

seq1  ATGAGACATTTAGTATAGTAAAATTAACTTACGAGGTTATTTCA-ACATG  1197
      |||||||  |||| |||||| |  |||| ||| ||| |||| || |||||
seq2  ATGAGAC--TTAG-ATAGTAGA--TAAC-TAC-AGG-TATTCCACACATG  1172

seq1  GGCTCAATATAAAATTATTAGCG  1220
      | ||||||||||||||| |||||
seq2  GCCTCAATATAAAATTA-TAGCG  1194

seq1: chr10_67813420_67814644
seq2: B6Ng01-144L19.g_69_1097 (reverse)

seq1  ACTCTGATGGCTCCAGCTTCCCTACTGTTTGTTCCCTTCTCCGTTGTCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTAGCCGTGACCAAAAGCCGGCCTGCTTCGATGATCCTCACGGCCAGCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CGAGTGAAGGGAAATGACTGCTTTTAAAAAGAATAAATGTACCCAAAGAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAATGGCAGTCGATGTATCAATGCCCAGCACCTACTCTTGGGTGGGATAA  200
                                       |||||  | ||| ||||
seq2  ---------------------------------ACTCT--GATGGAATAA  15

seq1  TTCTGGGGCGTATGTTCTGATTCCCCGAAGTCCTCCTTTGGTAAATATTA  250
      |||| ||||||||||||||| |||||||||| ||||||| ||||||| ||
seq2  TTCT-GGGCGTATGTTCTGA-TCCCCGAAGT-CTCCTTT-GTAAATA-TA  60

seq1  TCCAGGTGCCTGCCGATTCGGTGGTAGCCGATTCGACAACACATCCGGTA  300
      |||||||| ||| ||| |||||||||||||| ||||| ||||||||||||
seq2  TCCAGGTG-CTG-CGA-TCGGTGGTAGCCGA-TCGAC-ACACATCCGGTA  105

seq1  GAGGGCGCTTCCTATGTCTCATCTCATTTTTTGACCCCACAACTAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGCTTCCTATGTCTCATCTCATTTTTTGACCCCACAACTAGAATT  155

seq1  TTTCTGTGCCTCTCAAACTAACTGCTTGCCCTCAAGTGGCCTCGGGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGCCTCTCAAACTAACTGCTTGCCCTCAAGTGGCCTCGGGGTGT  205

seq1  GCTTCTAGGAGAACCCAAAGTACATCAGAACCCTTAGGGGTTCTTCTGGA  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAGGAGAA-CCAAAGTACATCAGAACCCTTAGGGGTTCTTCTGGA  254

seq1  TTTTATGTCATCATGAGCCATTTTGAACCCTAAGAAAATGAGTCGCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTCATCATGAGCCATTTTGAACCCTAAGAAAATGAGTCGCTATA  304

seq1  CTTAATTTCTTCGGGATGAAAGCTTGGTCCAGTGATATTTTAACTCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTCTTCGGGATGAAAGCTTGGTCCAGTGATATTTTAACTCTTGC  354

seq1  ATCGTCGGGAGTTCTCTAAGGTTGTTAAGAGTTGTCAGCTGCTATATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCGGGAGTTCTCTAAGGTTGTTAAGAGTTGTCAGCTGCTATATCCC  404

seq1  AGGACCTTAGCAAAACATGGAGGAGAATATGTACCAAAGATTCTCCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTAGCAAAACATGGAGGAGAATATGTACCAAAGATTCTCCTGAG  454

seq1  GAAAAACTGTTTTTACCCTGCAGGGTTTTACTTAGTGAGGCTCATTGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTGTTTTTACCCTGCAGGGTTTTACTTAGTGAGGCTCATTGGGC  504

seq1  CGTGAACACTTGGGACATAATGACTGGAACATGATATTCTTTTCTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACACTTGGGACATAATGACTGGAACATGATATTCTTTTCTTTTTC  554

seq1  AGACTTAGGCATTTATTGCTCTCCTTGAGAAGACTGGCTTTCCTCAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGGCATTTATTGCTCTCCTTGAGAAGACTGGCTTTCCTCAGGTA  604

seq1  AAGAACACATGTGGATGGGCGAGCCTGAAAGCCATTTTTATCTCCTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACATGTGGATGGGCGAGCCTGAAAGCCATTTTTATCTCCTTGGA  654

seq1  AGGCATTTTCATTCCGTCGTTCAACAAAGGTTTATTGAACTTTAACAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTCATTCCGTCGTTCAACAAAGGTTTATTGAACTTTAACAGGG  704

seq1  TTTGAGCTTTAGGCTAAGCCCTGTGAAGCACTCATAAACACAAAAAATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTTTAGGCTAAGCCCTGTGAAGCACTCATAAACACAAAAAATGG  754

seq1  GCAAAAGGCACAGTTCCATCCCAGGGTTCATAGATCTGGGAACAGCCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGCACAGTTCCATCCCAGGGTTCATAGATCTGGGAACAGCCATT  804

seq1  GAAATACCCTTTTTCAGGGTTCATTTGGGTGGTAATACATTTCATCCCGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACCCTTTTTCAGGGTTCATTTGGGTGGTAATACATTTCATCCCGG  854

seq1  AGAACAATCAGAAAATCAAATTGACTTTGGTATGTTTGCTTGATTTTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATCAGAAAATCAAATTGACTTTGGTATGTTTGCTTGATTTTAAA  904

seq1  AATATGATCCCAAGGGGAAAATAGCCCTGTCCACAGAGACGAATGATTAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATCCCAAGGGGAAAATAGCCCTGTCCACAGAGACGAATGATTAC  954

seq1  CAATCTCAAAATAGTTTGTACTGTATTTAAAAAAAAAAAAAAAAAACCCA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCAAAATAGTTTGTACTGTATTTAAAAAAAAAAAAAAAAAACCCA  1004

seq1  GCCACAAACATTCCCTTTTGAATTC  1225
      |||||||||||||||||||||||||
seq2  GCCACAAACATTCCCTTTTGAATTC  1029