BAC Information

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BAC

Clone NameB6Ng01-144O22
Chromosome10 (Build37)
Map Location 15,490,408 - 15,649,007
singlet/doubletdoublet
Overlap geneLOC671439
Upstream geneLOC666917, LOC637043, LOC100039492
Downstream geneLOC382457, LOC546472, LOC100039576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144O22.bB6Ng01-144O22.g
ACCDH942478DH942479
length1,1001,132
definitionDH942478|Mus musculus domesticus DNA, BAC clone: B6Ng01-144O22, 5' end.DH942479|Mus musculus domesticus DNA, BAC clone: B6Ng01-144O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,490,408 - 15,491,512)(15,647,857 - 15,649,007)
sequence
gaattcacttcattttctgaagtgatttgtatctgaaaaaatctgatttt
gagatttatgtatcaacttgggtgagataagcggtacttggagagatggt
aaactctattttgtgacatttttctgtaggtattcacagagagaataaag
tctaaacctccagttgaataaaggtgatagtgtttgccagttcacatggt
cattccctggtctcttcaggaactgacagtcccatgcagaggacagtcaa
atgctccacagttttaattggaccattcatgttctccttcacttgatgtt
agtatttaatgatggatcatgagccttcaaacatgagttatgtcattgtt
ctagtcccaacattgttgatgcccagagcaccagtgttgaacctggacta
acatttacactatggtttcctcctagtctcatctcctgtaagatcaaatt
ataccactgacctgactagttctgcagggtgtaggttagagattctcaat
ttgtgtattactgccccttcgcagttgaataactctttcataagggttgc
atatcagatactctgcatatctgatagttacattgtgatttataatagta
gcaaaattgcagttatgaagtatcattgaaattatttagtggagggcaaa
cacctcaccatgaagaactgtattaaaggaactcagcattaagaaggatc
tgagaagcaatggtgtaggtaaatgattgtgtgagctaattactaataaa
tctcacaaatacatgtatctgtgcatatatacatttaaatctcctcacta
atatatgcatgtgtgttcatgcttataacagatattcatttctttatgaa
tacatcagtgtgtgtgaaaaaatatataaaaaacctattatcttttcctc
aggagagcactgtatacatgtgtatagtacttgatatcaataactatgaa
gtgtattcacatactgaaataaatgtttactttgttaataggaaagtgtt
tctggtggttcacatcattataattcaaataatggggattgataaggtat
tgatgatgcaattataatcagactagaaaaaaatttctttaaaaagtaga

gaattcagttagatctaataagaattccctgggtagcatggtatagccaa
gtgaggagattttgtacacaaattgtagtacttgcttttgtaaaattagg
cacaaataaagattgttgtgagtacctaaaggtaactaatggaatagtaa
ttataataaacatgtgtgatggcagctttggtctctgatagccaaaggag
aaaggagcaaaatctttcgacaattttgaagacttttaatttgttgcttg
gagatatatgtaatacaaaagagtggcaaggattttgtttgtttgtttgt
ttgtttctttgtttaaataaccacacattcatatttgtcatgtatgttta
gttaaatggcagatgattaaaatgagatagatgtaatatctacacaccac
catcatcaccaccaacaccattgcccacatcatcatattgtattgtgaaa
attttgttagaaaaattgttcatcactccacaccagtaaggatgaacagc
caaaacactaactagcattgggagatgaaaattgctaaaatgagcaaggt
tctgagtggtatagccatgatggaaagtgacagtgtgtgaatcacaagat
ttgtgcatgtgaacctgtgacatgaatcctaaagacttatataaaacaag
aatgcatttgtactttccatttcctcaacatcactctctctgtcctctct
ttttttctctgtatcttctatttatctatatattttattatttaaaacaa
ttttcaaatctaaataaattgatcatgttttctttcttctctaagctctt
ctctacttgccaaacttaacttttctcgaaaacaaaaaacaaacaaacaa
cataacaaaacacaaaaagcataaagagaaaatgaccaaatatagaaata
aaatatgtcatccatatcccaccaaataataaccatatgcacacatgcta
caacacacataaagaccacacactaccaccacaaaaaaaaaaaaaaaacc
ctgaagaacaacacacaaaaatgaaccatggattcattattgtgtcagaa
actcctgaatgaaaatctgtccttagagtggttggatataaccaggtcat
tcatacaaaaaaaaaaaaaaacctaatttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_15490408_15491512
seq2: B6Ng01-144O22.b_48_1147

seq1  GAATTCACTTCATTTTCTGAAGTGATTTGTATCTGAAAAAATCTGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCATTTTCTGAAGTGATTTGTATCTGAAAAAATCTGATTTT  50

seq1  GAGATTTATGTATCAACTTGGGTGAGATAAGCGGTACTTGGAGAGATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTATGTATCAACTTGGGTGAGATAAGCGGTACTTGGAGAGATGGT  100

seq1  AAACTCTATTTTGTGACATTTTTCTGTAGGTATTCACAGAGAGAATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTATTTTGTGACATTTTTCTGTAGGTATTCACAGAGAGAATAAAG  150

seq1  TCTAAACCTCCAGTTGAATAAAGGTGATAGTGTTTGCCAGTTCACATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACCTCCAGTTGAATAAAGGTGATAGTGTTTGCCAGTTCACATGGT  200

seq1  CATTCCCTGGTCTCTTCAGGAACTGACAGTCCCATGCAGAGGACAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTGGTCTCTTCAGGAACTGACAGTCCCATGCAGAGGACAGTCAA  250

seq1  ATGCTCCACAGTTTTAATTGGACCATTCATGTTCTCCTTCACTTGATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCACAGTTTTAATTGGACCATTCATGTTCTCCTTCACTTGATGTT  300

seq1  AGTATTTAATGATGGATCATGAGCCTTCAAACATGAGTTATGTCATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAATGATGGATCATGAGCCTTCAAACATGAGTTATGTCATTGTT  350

seq1  CTAGTCCCAACATTGTTGATGCCCAGAGCACCAGTGTTGAACCTGGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCCAACATTGTTGATGCCCAGAGCACCAGTGTTGAACCTGGACTA  400

seq1  ACATTTACACTATGGTTTCCTCCTAGTCTCATCTCCTGTAAGATCAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACACTATGGTTTCCTCCTAGTCTCATCTCCTGTAAGATCAAATT  450

seq1  ATACCACTGACCTGACTAGTTCTGCAGGGTGTAGGTTAGAGATTCTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACTGACCTGACTAGTTCTGCAGGGTGTAGGTTAGAGATTCTCAAT  500

seq1  TTGTGTATTACTGCCCCTTCGCAGTTGAATAACTCTTTCATAAGGGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTACTGCCCCTTCGCAGTTGAATAACTCTTTCATAAGGGTTGC  550

seq1  ATATCAGATACTCTGCATATCTGATAGTTACATTGTGATTTATAATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATACTCTGCATATCTGATAGTTACATTGTGATTTATAATAGTA  600

seq1  GCAAAATTGCAGTTATGAAGTATCATTGAAATTATTTAGTGGAGGGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTGCAGTTATGAAGTATCATTGAAATTATTTAGTGGAGGGCAAA  650

seq1  CACCTCACCATGAAGAACTGTATTAAAGGAACTCAGCATTAAGAAGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACCATGAAGAACTGTATTAAAGGAACTCAGCATTAAGAAGGATC  700

seq1  TGAGAAGCAATGGTGTAGGTAAATGATTGTGTGAGCTAATTACTAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCAATGGTGTAGGTAAATGATTGTGTGAGCTAATTACTAATAAA  750

seq1  TCTCACAAATACATGTATCTGTGCATATATACATTTAAATCTCCTCACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAATACATGTATCTGTGCATATATACATTTAAATCTCCTCACTA  800

seq1  ATATATGCATGTGTGTTCATGCTTATAACAGATATTCATTTCTTTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCATGTGTGTTCATGCTTATAACAGATATTCATTTCTTTATGAA  850

seq1  TACATCAGTGTGTGTGAAAAAATATATAAAAAACCTATTATCTTTTCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAGTGTGTGTGAAAAAATATATAAAAAACCTATTATCTTTTCCTC  900

seq1  AGGAGAGCACTGTATACATGTGTATAGTACTTGATATCAATAACTATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCACTGTATACATGTGTATAGTACTTGATATCAATAACTATGAA  950

seq1  GTGTATTCACAATACTGAAAATAAATGTTTACTTTGTAAATTAGATAAGT  1000
      |||||||||| |||||| ||||||||||||||||||| || |||  ||||
seq2  GTGTATTCAC-ATACTG-AAATAAATGTTTACTTTGTTAA-TAGGAAAGT  997

seq1  GTTTCT-GTGGTTCCACATCAATTATATTTCAATATATTGTGTATTGATA  1049
      |||||| |||||| |||||| |||||| ||||| ||| || | |||||||
seq2  GTTTCTGGTGGTT-CACATC-ATTATAATTCAA-ATAATGGGGATTGATA  1044

seq1  A-GTATTGATGATGCAAATTTATAATCAGACTAG-AAAATATTTCTTTAT  1097
      | |||||||||||||||  ||||||||||||||| |||| ||||||||| 
seq2  AGGTATTGATGATGCAA--TTATAATCAGACTAGAAAAAAATTTCTTTAA  1092

seq1  AAAGTAGA  1105
      ||||||||
seq2  AAAGTAGA  1100

seq1: chr10_15647857_15649007
seq2: B6Ng01-144O22.g_68_1199 (reverse)

seq1  GGGAAATAAGATTTTTTTTTTTTTTTGTAATGGAATGACACTGGGTATAT  50
      ||||||| || ||||||||||||||||||   ||||||| |||| |||||
seq2  GGGAAATTAGGTTTTTTTTTTTTTTTGTA--TGAATGAC-CTGGTTATAT  47

seq1  -CAACCACTCTAA-GACAGA-TCTCA-TCAGGAGTTCTTGACCAACAAAT  96
       |||||||||||| |||||| | ||| |||||||||  ||||  || |||
seq2  CCAACCACTCTAAGGACAGATTTTCATTCAGGAGTTTCTGAC--AC-AAT  94

seq1  AATGGAATCCATGGTTCATTTTTGTTGTTGTTGTTCTTCAGGGTTTTTTT  146
      ||| |||||||||||||||||||||   ||||||||||||||| ||||||
seq2  AAT-GAATCCATGGTTCATTTTTGT--GTGTTGTTCTTCAGGG-TTTTTT  140

seq1  TTTTTTTTTTTTGGTGTGTGTGTATGTGTGTGTGTCTTTATGTGTGTTTG  196
      |||||||||| |||||     ||| ||||||| ||||||||||||| |||
seq2  TTTTTTTTTTGTGGTG-----GTA-GTGTGTG-GTCTTTATGTGTG-TTG  182

seq1  TATGCATGTGTGCATATGGTTATTATTTGGTGGGATATTGGATGACATAT  246
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TA-GCATGTGTGCATATGGTTATTATTTGGTGGGATA-TGGATGACATAT  230

seq1  TTTATTTCTATATTTTGGTCATTTTCTCTTTATGCTTTTTGTGTTTTGTT  296
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTATA-TTTGGTCATTTTCTCTTTATGCTTTTTGTGTTTTGTT  279

seq1  ATGTTTGTTTGTTTGTTTTTTGTTTTTCGAGAAAAGTTAAGTTTGGCAAG  346
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATG-TTGTTTGTTTGTTTTTTG-TTTTCGAGAAAAGTTAAGTTTGGCAAG  327

seq1  TAGAGAAGAGCTTAGAGAAGAAAGAAAACATGATCAATTTATTTAGATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGAGCTTAGAGAAGAAAGAAAACATGATCAATTTATTTAGATTT  377

seq1  GAAAATTGTTTTAAATAATAAAATATATAGATAAATAGAAGATACAGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTTTTAAATAATAAAATATATAGATAAATAGAAGATACAGAGA  427

seq1  AAAAAAGAGAGGACAGAGAGAGTGATGTTGAGGAAATGGAAAGTACAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGAGGACAGAGAGAGTGATGTTGAGGAAATGGAAAGTACAAAT  477

seq1  GCATTCTTGTTTTATATAAGTCTTTAGGATTCATGTCACAGGTTCACATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTGTTTTATATAAGTCTTTAGGATTCATGTCACAGGTTCACATG  527

seq1  CACAAATCTTGTGATTCACACACTGTCACTTTCCATCATGGCTATACCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCTTGTGATTCACACACTGTCACTTTCCATCATGGCTATACCAC  577

seq1  TCAGAACCTTGCTCATTTTAGCAATTTTCATCTCCCAATGCTAGTTAGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCTTGCTCATTTTAGCAATTTTCATCTCCCAATGCTAGTTAGTG  627

seq1  TTTTGGCTGTTCATCCTTACTGGTGTGGAGTGATGAACAATTTTTCTAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTGTTCATCCTTACTGGTGTGGAGTGATGAACAATTTTTCTAAC  677

seq1  AAAATTTTCACAATACAATATGATGATGTGGGCAATGGTGTTGGTGGTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTCACAATACAATATGATGATGTGGGCAATGGTGTTGGTGGTGA  727

seq1  TGATGGTGGTGTGTAGATATTACATCTATCTCATTTTAATCATCTGCCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGGTGTGTAGATATTACATCTATCTCATTTTAATCATCTGCCAT  777

seq1  TTAACTAAACATACATGACAAATATGAATGTGTGGTTATTTAAACAAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAAACATACATGACAAATATGAATGTGTGGTTATTTAAACAAAGA  827

seq1  AACAAACAAACAAACAAACAAAATCCTTGCCACTCTTTTGTATTACATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAAATCCTTGCCACTCTTTTGTATTACATAT  877

seq1  ATCTCCAAGCAACAAATTAAAAGTCTTCAAAATTGTCGAAAGATTTTGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAGCAACAAATTAAAAGTCTTCAAAATTGTCGAAAGATTTTGCT  927

seq1  CCTTTCTCCTTTGGCTATCAGAGACCAAAGCTGCCATCACACATGTTTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCTTTGGCTATCAGAGACCAAAGCTGCCATCACACATGTTTAT  977

seq1  TATAATTACTATTCCATTAGTTACCTTTAGGTACTCACAACAATCTTTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTACTATTCCATTAGTTACCTTTAGGTACTCACAACAATCTTTAT  1027

seq1  TTGTGCCTAATTTTACAAAAGCAAGTACTACAATTTGTGTACAAAATCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTAATTTTACAAAAGCAAGTACTACAATTTGTGTACAAAATCTC  1077

seq1  CTCACTTGGCTATACCATGCTACCCAGGGAATTCTTATTAGATCTAACTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGGCTATACCATGCTACCCAGGGAATTCTTATTAGATCTAACTG  1127

seq1  AATTC  1151
      |||||
seq2  AATTC  1132