BAC Information

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BAC

Clone NameB6Ng01-145K15
Chromosome10 (Build37)
Map Location 4,905,296 - 4,906,413
singlet/doubletsinglet
Overlap geneSyne1
Upstream geneLOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145K15.bB6Ng01-145K15.g
ACCDH943006DH943007
length1,1361,099
definitionDH943006|Mus musculus domesticus DNA, BAC clone: B6Ng01-145K15, 5' end.DH943007|Mus musculus domesticus DNA, BAC clone: B6Ng01-145K15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaagt
gttcaagatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgctggt
gggattgcaagcttgtacaaccactctggaagtcagtctggaggttcctc
agaaaattggacataatactactcctgggcatatacccagaagaagtccc
aactggtaataagaacacatgctccactatgtttatagcagccttattta
taataaccagaagctggaaagaacccagatttccctcaacagaagaatgg
atacagaaaatgtggtacatttacacaatggagtactagtcagctattaa
aaacaatggatttatgaaattcttggacaaatggatgtatctggaagata
tcatctttagtgaggtaacacaatcacaaaagaagtcattacatatgcac
tcactgataagtggatattagcccagaaacatagaacacccacaatacaa
tttgcaaaacacaagaaagtcaagaagagggaagaccaatgggtggatac
ttcattcctccttagaatagggaacaaaatatccataaaaggagttacag
agacaaagtttggagctaagatgaaaggatggactatccagagactaccc
cactcgaggatccatcccataatcagccaccaaacccagacactattgca
tatgccagaaaaattttgctgaagggaccctgctatagctgtctcttgtg
aggctatgccagtgcctggcaaatacagaatcggatgctcacagtcatct
ataagatgggaacacagggccccaatggagaagctaagaaagcatccagg
agctaaagggtctgcatcctataggtggacacatatgactaccagtactc
ccagagctcgtatctctagctgcatatgtagcagaagatggcctagttgc
catcactgggaggaagccccttggtattgcaactttatattgcccagtac
agggaatgccaggccagaagtgaattgttgcaagga
gaattctgtgcaaatccttctggttgtacagatcggtggcagatagttag
ggacaggtttttaccacctcagctcacctttagtttctgcttctggtatt
gagaggtgtctccatgcatactgtaacagcactgctctgcattgctgcct
caggcttgagcagagctgaacagttgatctgtcagtcttaaatgcaggag
aattctggtcacaagcaatcaaacaaacaaaaacaccacccaaaatcagg
atttttatgtagtgaatacaggagtctgggaattggtgcttgtttctgaa
gctttagaaagtacatttctgagacataaatggtggagagagcagtgtct
cagaagcatgccagtaaagtccccgtaggacctagttctagttgccctca
gcagaaagttccagtagcacacctttggttagttttcttcctcctttgca
atcttactcccaatacattcttcctctttagctacctgggaatgcctcct
caaacagccacatacacccaaatgctgtcctgtgggatgagcccaacaga
tcacatgtgaacagccgtgtagccatataaatcagctaaataaaccagac
aagtgctagcataagagaatatcacattgaaagtgtactcccctgatgtc
tggatccaaatcttcctacatttacctgcagattgaaggagccttcacat
gcgtgttgcaagagtacacctgactttctaaatgaaaggcatctctgcca
ctgtatttgacctattgtctatgagatgtttttcatggtcagttaaattc
tgggttaaattattctgaaaaaaaaagtagtcgacttttgttaaaacatt
cctctgtgtaagtgccctactcattcatgtatagttagaattacaggatc
acaaaggttgcaaacattttcatagcttcagtggcagagagggaaataga
tttaggaggacttctgatctggcctttcatatgtatcatataagcccttt
agatctcatgcaccttaactgagttacatggaggtaataatatgtgtttc
ggtttgccatgctgtgtgctgggtctaaccatcccttcatggaggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_4905296_4906413
seq2: B6Ng01-145K15.g_68_1166

seq1  GAATTCTGTGCAAATCCTTCTGGTTGTACAGATCGGTGGCAGATAGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCAAATCCTTCTGGTTGTACAGATCGGTGGCAGATAGTTAG  50

seq1  GGACAGGTTTTTACCACCTCAGCTCACCTTTAGTTTCTGCTTCTGGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTTTTTACCACCTCAGCTCACCTTTAGTTTCTGCTTCTGGTATT  100

seq1  GAGAGGTGTCTCCATGCATACTGTAACAGCACTGCTCTGCATTGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGTCTCCATGCATACTGTAACAGCACTGCTCTGCATTGCTGCCT  150

seq1  CAGGCTTGAGCAGAGCTGAACAGTTGATCTGTCAGTCTTAAATGCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGAGCAGAGCTGAACAGTTGATCTGTCAGTCTTAAATGCAGGAG  200

seq1  AATTCTGGTCACAAGCAATCAAACAAACAAAAACACCACCCAAAATCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGTCACAAGCAATCAAACAAACAAAAACACCACCCAAAATCAGG  250

seq1  ATTTTTATGTAGTGAATACAGGAGTCTGGGAATTGGTGCTTGTTTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGTAGTGAATACAGGAGTCTGGGAATTGGTGCTTGTTTCTGAA  300

seq1  GCTTTAGAAAGTACATTTCTGAGACATAAATGGTGGAGAGAGCAGTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGAAAGTACATTTCTGAGACATAAATGGTGGAGAGAGCAGTGTCT  350

seq1  CAGAAGCATGCCAGTAAAGTCCCCGTAGGACCTAGTTCTAGTTGCCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCATGCCAGTAAAGTCCCCGTAGGACCTAGTTCTAGTTGCCCTCA  400

seq1  GCAGAAAGTTCCAGTAGCACACCTTTGGTTAGTTTTCTTCCTCCTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGTTCCAGTAGCACACCTTTGGTTAGTTTTCTTCCTCCTTTGCA  450

seq1  ATCTTACTCCCAATACATTCTTCCTCTTTAGCTACCTGGGAATGCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTCCCAATACATTCTTCCTCTTTAGCTACCTGGGAATGCCTCCT  500

seq1  CAAACAGCCACATACACCCAAATGCTGTCCTGTGGGATGAGCCCAACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCCACATACACCCAAATGCTGTCCTGTGGGATGAGCCCAACAGA  550

seq1  TCACATGTGAACAGCCGTGTAGCCATATAAATCAGCTAAATAAACCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTGAACAGCCGTGTAGCCATATAAATCAGCTAAATAAACCAGAC  600

seq1  AAGTGCTAGCATAAGAGAATATCACATTGAAAGTGTACTCCCCTGATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAGCATAAGAGAATATCACATTGAAAGTGTACTCCCCTGATGTC  650

seq1  TGGATCCAAATCTTCCTACATTTACCTGCAGATTGAAGGAGCCTTCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCAAATCTTCCTACATTTACCTGCAGATTGAAGGAGCCTTCACAT  700

seq1  GCGTGTTGCAAGAGTACACCTGACTTTCTAAATGAAAGGCATCTCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTGCAAGAGTACACCTGACTTTCTAAATGAAAGGCATCTCTGCCA  750

seq1  CTGTATTTGACCTATTGTCTATGAGATGTTTTTCATGGTCAGTTAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTGACCTATTGTCTATGAGATGTTTTTCATGGTCAGTTAAATTC  800

seq1  TGGGTTAAATTATTCTGAAAAAAAAAGTAGTCGACTTTTGTTAAAACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAAATTATTCTGAAAAAAAAAGTAGTCGACTTTTGTTAAAACATT  850

seq1  CCTCTGTGTAAGTGCCCTACTCATTCATGTATAGTTAGAATTACAGGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTAAGTGCCCTACTCATTCATGTATAGTTAGAATTACAGGATC  900

seq1  ACAAAGGTTGCAAACATTTTCATAGCTTCAGTTGGCAGAGAGGGAAAATA  950
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAAAGGTTGCAAACATTTTCATAGCTTCAG-TGGCAGAGAGGG-AAATA  948

seq1  GGATTTAAGGAGAACTTCTGATCTGGCCTTTTCATTATGTATTCATATTA  1000
       ||||| ||||| ||||||||||||||| ||||| |||||| ||||| ||
seq2  -GATTT-AGGAGGACTTCTGATCTGGCC-TTTCA-TATGTA-TCATA-TA  992

seq1  AGCCCTTTAAGATTCTCATGCACCTAAACTGAAGTTACATGGAGGTTATA  1050
      |||||||| ||| |||||||||||| ||||| |||||||||||||| || 
seq2  AGCCCTTT-AGA-TCTCATGCACCTTAACTG-AGTTACATGGAGGTAAT-  1038

seq1  AATATGTGGTTTCCGTTTTGCACATGCCTGTGTGCTGTGGTCTAGCATCC  1100
      ||||||||  || || ||||| |||| |||||||||| |||||| |   |
seq2  AATATGTG--TTTCGGTTTGC-CATG-CTGTGTGCTG-GGTCTAACCATC  1083

seq1  CCTTCCCATGGAGGTGGA  1118
      ||||  ||||||||||||
seq2  CCTT--CATGGAGGTGGA  1099