BAC Information

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BAC

Clone NameB6Ng01-146A12
Chromosome10 (Build37)
Map Location 80,613,586 - 80,768,811
singlet/doubletdoublet
Overlap geneZbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c
Upstream geneMidn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2
Downstream gene2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A12.bB6Ng01-146A12.g
ACCDH943278DH943279
length1,16388
definitionDH943278|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A12, 5' end.DH943279|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,767,652 - 80,768,811)(80,613,586 - 80,613,673)
sequence
gaattctctgccttcctcgaactgaggttagagacaagtgccaggcctgg
cttttgagtgggttttggggccagaaccacacgcagctacactcatggga
ccagctttggccaaggagcaagtgggcgggcacctgtgtgtctcctcctt
cttgctgctcaaatacttgtaggcaggggcacagggagccttgctggtga
cagatggcgtgctcagaatgcagccgcgagggcctacctggggaagaaga
tgctctccaccacgtagaagtcctgcatgagcacgtcccgctccggctta
gagctcaggttgcccaccgtgtacccgatccccagctggatggcgccctt
cagggtggacgaggtggtctgtggggagggttggtggcatcaggaccctg
gaggcctctctgtgctgtccagcacacacacacatgaacaaacacacaca
cacacacacacacacacacacacacacacacacacagagacacacacaca
cacggtactgcactgaggatatccatctgcatctgtccagctaacagcca
ccttccacagccacacacagcaggggctccgcaacagaagtgaactggag
gtgtgggaggcagggctcagaggggatagctatgtctcatgggggtgggg
tgacacaatattacattcatgacggctgacactttagcagaccggacggt
gctgcttttcacaccaacatccttgcagggaggctaagggccagtcatgg
gggcttcccttcccagcccccacacctgtcttggctaccttcttatacgt
agtctctcccgacgcatccacgcctcggtgggcccagcttcttcccatgg
ccagggcctggctgcctgtcaccaagggggcctggggaacagggaccaaa
aacagttggggaaggtagccagaatgttctgtagtgcaaaagcaaagggc
ttggaggaaaaggcgcttctgtgctgtgggggctggggggtcacagggcc
aagctgcctgtgcttctctcacctgccactagggggaacgctgcttccaa
ggaacccaaattaatcattcccccaaaagtcatccctcgggaaactaaag
acctagactcccctctctcccacagactctgcagtcctgtgggggaccct
gggacacctcccc
actagtggtttgagcggagggtgctgtagaaaggttttatttggttgttt
ggggtttattttgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80767652_80768811
seq2: B6Ng01-146A12.b_46_1208 (reverse)

seq1  GGGGAGG-GTCCCAGGGACACCCCAGA-GCCTGCAGAG-CTGTGAG-GAG  46
      ||||||| ||||||||| | ||||| | | |||||||| ||||| | |||
seq2  GGGGAGGTGTCCCAGGGTC-CCCCACAGGACTGCAGAGTCTGTGGGAGAG  49

seq1  AGGGGAG-CTAGG-CTCTAGTGTCCGGA-GGATGAC-ATTGGGGGATAGA  92
      ||||||| ||||| || |||| ||| || |||||||  ||||||||  ||
seq2  AGGGGAGTCTAGGTCTTTAGTTTCCCGAGGGATGACTTTTGGGGGAATGA  99

seq1  -TAATCTGGGTTCC-TGGAAGCAGCGTGCCCCCTAGTGGCAGGTGTAGAG  140
       |||| |||||||| |||||||||||| ||||||||||||||||| ||||
seq2  TTAATTTGGGTTCCTTGGAAGCAGCGTTCCCCCTAGTGGCAGGTG-AGAG  148

seq1  AAGCACAGGCAGCTTGGCCCTGGTGACCCCCCAGCCCCCACAGCACAGCA  190
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  AAGCACAGGCAGCTTGGCCCT-GTGACCCCCCAGCCCCCACAGCACAGAA  197

seq1  GCCGCCTTCTGCCTCCCAAGCCCTCTGCTTCTGCACTTACAGAACCTTCT  240
      | |||||| | ||| ||||||||| ||||| ||||| |||||||| ||||
seq2  G-CGCCTT-TTCCT-CCAAGCCCTTTGCTTTTGCAC-TACAGAACATTCT  243

seq1  GGCTACCTTCCCAAACTGTTTTTGGTCCCTGTTCCCCAGGCCCCCTTGGT  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCTACCTTCCCCAACTGTTTTTGGTCCCTGTTCCCCAGGCCCCCTTGGT  293

seq1  GACAGGGCAGCCAGGCCCTGGCCATGGGAAGAAGCTGGG-CCACCGAGGC  339
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACA-GGCAGCCAGGCCCTGGCCATGGGAAGAAGCTGGGCCCACCGAGGC  342

seq1  GTGGATGCGTCGGGAGAGACTACGTATAAGAAGGTAGCCAAGACAGGTGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCGTCGGGAGAGACTACGTATAAGAAGGTAGCCAAGACAGGTGT  392

seq1  GGGGGCTGGGAAGGGAAGCCCCCATGACTGGCCCTTAGCCTCCCTGCAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGGGAAGGGAAGCCCCCATGACTGGCCCTTAGCCTCCCTGCAAG  442

seq1  GATGTTGGTGTGAAAAGCAGCACCGTCCGGTCTGCTAAAGTGTCAGCCGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGTGTGAAAAGCAGCACCGTCCGGTCTGCTAAAGTGTCAGCCGT  492

seq1  CATGAATGTAATATTGTGTCACCCCACCCCCATGAGACATAGCTATCCCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGTAATATTGTGTCACCCCACCCCCATGAGACATAGCTATCCCC  542

seq1  TCTGAGCCCTGCCTCCCACACCTCCAGTTCACTTCTGTTGCGGAGCCCCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCCTGCCTCCCACACCTCCAGTTCACTTCTGTTGCGGAGCCCCT  592

seq1  GCTGTGTGTGGCTGTGGAAGGTGGCTGTTAGCTGGACAGATGCAGATGGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTGGCTGTGGAAGGTGGCTGTTAGCTGGACAGATGCAGATGGA  642

seq1  TATCCTCAGTGCAGTACCGTGTGTGTGTGTGTCTCTGTGTGTGTGTGTGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCAGTGCAGTACCGTGTGTGTGTGTGTCTCTGTGTGTGTGTGTGT  692

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTCATGTGTGTGTGTGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTCATGTGTGTGTGTGC  742

seq1  TGGACAGCACAGAGAGGCCTCCAGGGTCCTGATGCCACCAACCCTCCCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCACAGAGAGGCCTCCAGGGTCCTGATGCCACCAACCCTCCCCA  792

seq1  CAGACCACCTCGTCCACCCTGAAGGGCGCCATCCAGCTGGGGATCGGGTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCACCTCGTCCACCCTGAAGGGCGCCATCCAGCTGGGGATCGGGTA  842

seq1  CACGGTGGGCAACCTGAGCTCTAAGCCGGAGCGGGACGTGCTCATGCAGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGGGCAACCTGAGCTCTAAGCCGGAGCGGGACGTGCTCATGCAGG  892

seq1  ACTTCTACGTGGTGGAGAGCATCTTCTTCCCCAGGTAGGCCCTCGCGGCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTACGTGGTGGAGAGCATCTTCTTCCCCAGGTAGGCCCTCGCGGCT  942

seq1  GCATTCTGAGCACGCCATCTGTCACCAGCAAGGCTCCCTGTGCCCCTGCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGAGCACGCCATCTGTCACCAGCAAGGCTCCCTGTGCCCCTGCC  992

seq1  TACAAGTATTTGAGCAGCAAGAAGGAGGAGACACACAGGTGCCCGCCCAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTATTTGAGCAGCAAGAAGGAGGAGACACACAGGTGCCCGCCCAC  1042

seq1  TTGCTCCTTGGCCAAAGCTGGTCCCATGAGTGTAGCTGCGTGTGGTTCTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTTGGCCAAAGCTGGTCCCATGAGTGTAGCTGCGTGTGGTTCTG  1092

seq1  GCCCCAAAACCCACTCAAAAGCCAGGCCTGGCACTTGTCTCTAACCTCAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAAACCCACTCAAAAGCCAGGCCTGGCACTTGTCTCTAACCTCAG  1142

seq1  TTCGAGGAAGGCAGAGAATTC  1160
      |||||||||||||||||||||
seq2  TTCGAGGAAGGCAGAGAATTC  1163

seq1: chr10_80613586_80613673
seq2: B6Ng01-146A12.g_73_160

seq1  ACTAGAGGTTTGAGCGGAGGGTGCTGTAGAAAGGTTTTATTTGGTTGTTT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGGTTTGAGCGGAGGGTGCTGTAGAAAGGTTTTATTTGGTTGTTT  50

seq1  GGGGTTTATTTTGTGTGTGTGTGTGTGTGTGTGTGTGT  88
      ||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTATTTTGTGTGTGTGTGTGTGTGTGTGTGTGT  88