BAC Information

Click to search

BAC

Clone NameB6Ng01-146P15
Chromosome10 (Build37)
Map Location 120,115,530 - 120,209,580
singlet/doubletdoublet
Overlap geneLOC100042902
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik, Hmga2
Downstream geneMsrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146P15.bB6Ng01-146P15.g
ACCDH943981DH943982
length9741,139
definitionDH943981|Mus musculus domesticus DNA, BAC clone: B6Ng01-146P15, 5' end.DH943982|Mus musculus domesticus DNA, BAC clone: B6Ng01-146P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,115,530 - 120,116,537)(120,208,429 - 120,209,580)
sequence
gaattccaacaaattagttaagcactgctccccttcccggagtgacgtca
gctgtctttaatcaagcttgcttgtccaactgttccctatttgatacctt
caagcagtcaggatgtttccttcgactaacaccgcggcgcagcttctcat
actctgcagagtcacagctctctgtggataacaggtcagggatgcgatgc
atctgacatggggactccatcccagcttctttttataggaagagaccttt
cccactaaacccagagctaaacgctttaaatcggaatcacgaagggcggc
atctcagagtcttccctccggaagttgttagtattacctttacatatttg
agcttctcaatgatgtaatcccaggaccatgcagtccctatgctaattgt
aactggtatttactctgtggtagtagtgccaagtcttgacttaagaagtc
aagaggttacactatacagatgcgcaattagatagctatgaaacatttgc
ctgaaggctttgatagtttaatgttttccattagactcgtacacagatat
gtgtattcttatagatatgtatattttagaatacatgtgtgtctctgcaa
cacctcatgtgtggccatgatagccatcacataaacttcttcatttttcc
aaaccctgggatacaatttcaaaccacatataaacggactttatactgca
catatgcgccacacagggccctaccacacagatggtatcattatttccac
acggactgattcatagtctaaacccagaaaaggatctccaagaaaagatg
ttttaagaccaagtttccaaaaggaaacccttcaagagaatgtccagcat
agctctgatactttgcaggggcgggaggggaggggcaggcaaggcagaag
gcccccaaactagaccaaaccaaacaaaaggagcagcattaaaagttctg
tgatgatggggggggggggggaaa
gaattcactttggctactcatactaatactgtcctactgcgtgtaaggga
ttggcgccttgttattattatttcatttggatgttgcaaagggttttgac
gtcttttggacacttgaaagagagaaatactcttaatttcccttatagat
gaatgctattattaaaagtataaaactctttgcctcctggatcaggagcc
tggaaacaggagaaccaaacaagcatcatttgatgtttctctaagtgcag
aaagtgtagctcttctcgttggtagaattatttcaacacatgcgactttc
tctaagttcttaaatttctgagggaaactgccagttttatgtgaggtagg
gtacaaagttttataagtgaaatgttccaaagcagtgttaaaaaaaaaaa
aaacccacctaattcaaagcagcaacaacaacaacaaaacatgtcaacca
tcaaaatatgttgcattcttcgggaagttagtccacgtcgagcaagtatt
tttgtaccaaatgactattcattcatggatttcgttacgggggagacatc
ttaaagctgctggataggaatgtgtcctgaaatccagtctgttaaagttc
aaacgtttgatttcatccgataggagcgcatttagagactctacagtgtt
catacaatccatacgtccatctaggtaattctgaattctgaatgctgtca
tggattctctggcattaccagtatggtgggaaaaatttttcctaactgga
cttttaaccagcaagaagaaataactataagttgaaattgaaaataaata
gagctggaaacatgctatacccccatctgaacccaccccttccccccaaa
accaggtccccattcacccagaacggcccccccccaattggctggttaga
caaaagccagcagttctcagaaacttggggaaatggttttccccattcaa
tgagccttatcactggcagaagagacaaatgcatctgtggtgctataacc
acacagatgtcatgctggctccaggcttccttcagcagcacaaggtcttg
ctctttctcacagtcctctacctctgctttctcagttcaggattcccctc
catcgactaccaatccgtataagacacaattcggctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_120115530_120116537
seq2: B6Ng01-146P15.b_46_1019

seq1  GAATTCCAACAAATTAGTTAAGCACTGCTCCCCTTCCCGGAGTGACGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAAATTAGTTAAGCACTGCTCCCCTTCCCGGAGTGACGTCA  50

seq1  GCTGTCTTTAATCAAGCTTGCTTGTCCAACTGTTCCCTATTTGATACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTTAATCAAGCTTGCTTGTCCAACTGTTCCCTATTTGATACCTT  100

seq1  CAAGCAGTCAGGATGTTTCCTTCGACTAACACCGCGGCGCAGCTTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGTCAGGATGTTTCCTTCGACTAACACCGCGGCGCAGCTTCTCAT  150

seq1  ACTCTGCAGAGTCACAGCTCTCTGTGGATAACAGGTCAGGGATGCGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGAGTCACAGCTCTCTGTGGATAACAGGTCAGGGATGCGATGC  200

seq1  ATCTGACATGGGGACTCCATCCCAGCTTCTTTTTATAGGAAGAGACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACATGGGGACTCCATCCCAGCTTCTTTTTATAGGAAGAGACCTTT  250

seq1  CCCACTAAACCCAGAGCTAAACGCTTTAAATCGGAATCACGAAGGGCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAAACCCAGAGCTAAACGCTTTAAATCGGAATCACGAAGGGCGGC  300

seq1  ATCTCAGAGTCTTCCCTCCGGAAGTTGTTAGTATTACCTTTACATATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGTCTTCCCTCCGGAAGTTGTTAGTATTACCTTTACATATTTG  350

seq1  AGCTTCTCAATGATGTAATCCCAGGACCATGCAGTCCCTATGCTAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCAATGATGTAATCCCAGGACCATGCAGTCCCTATGCTAATTGT  400

seq1  AACTGGTATTTACTCTGTGGTAGTAGTGCCAAGTCTTGACTTAAGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTATTTACTCTGTGGTAGTAGTGCCAAGTCTTGACTTAAGAAGTC  450

seq1  AAGAGGTTACACTATACAGATGCGCAATTAGATAGCTATGAAACATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTACACTATACAGATGCGCAATTAGATAGCTATGAAACATTTGC  500

seq1  CTGAAGGCTTTGATAGTTTAATGTTTTCCATTAGACTCGTACACAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCTTTGATAGTTTAATGTTTTCCATTAGACTCGTACACAGATAT  550

seq1  GTGTATTCTTATAGATATGTATATTTTAGAATACATGTGTGTCTCTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCTTATAGATATGTATATTTTAGAATACATGTGTGTCTCTGCAA  600

seq1  CACCTCATGTGTGGCCATGATAGCCATCACATAAACTTCTTCATTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATGTGTGGCCATGATAGCCATCACATAAACTTCTTCATTTTTCC  650

seq1  AAACCCTGGGATACAATTTCAAACCACATATAAACGGACTTTATACTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGGGATACAATTTCAAACCACATATAAACGGACTTTATACTGCA  700

seq1  CATATGCGCCACACAGGGCCCTACCACACAGATGGTATCATTATTTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCGCCACACAGGGCCCTACCACACAGATGGTATCATTATTTCCAC  750

seq1  ACGGACTGATTCATAGTCTAAACCCAGAAAAGGATCTCCAAGAAAAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACTGATTCATAGTCTAAACCCAGAAAAGGATCTCCAAGAAAAGATG  800

seq1  TTTTAAGACCAAGTTTCCAAAAGGAAACCCTTCAAGAGAATGTCCAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGACCAAGTTTCCAAAAGGAAACCCTTCAAGAGAATGTCCAGCAT  850

seq1  AGCTCTGATACTTTGCAGGGGCGGGAGGGGAGGGGCAGGCAAGGCAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGATACTTTGCAGGGGCGGGAGGGGAGGGGCAGGCAAGGCAGAAG  900

seq1  GCCCCCAAACTAGAACCAAAACCAAACAAAAGGAGCAGCATTAAAAAGTT  950
      ||||||||||||||  | |||||||||||||||||||||||| |||||||
seq2  GCCCCCAAACTAGA--CCAAACCAAACAAAAGGAGCAGCATT-AAAAGTT  947

seq1  CTGTGATGATGGGGGGGGGGGG---AATGCTATAAACTTTTTACTATGAC  997
      ||||||||||||||||||||||   ||                       
seq2  CTGTGATGATGGGGGGGGGGGGGGAAA-----------------------  974

seq1  TTGTTTGGAAA  1008
                 
seq2  -----------  974

seq1: chr10_120208429_120209580
seq2: B6Ng01-146P15.g_70_1208 (reverse)

seq1  TATAGCCGAAATTGTAGTCTATAAAGGGAATGAGTAGCTGAAGGGAGGGA  50
      |||||||| |||||| |||| || | ||| || ||||  || ||  ||||
seq2  TATAGCCG-AATTGT-GTCT-TATACGGATTG-GTAGTCGATGGAGGGGA  46

seq1  ACCCCATGAACTGGAGAAGCAGAGGGTAGGAGACAGGTGAG-AAGAGCCA  99
      | ||  |||||||   ||||||| |||||  |||  ||||| ||||| ||
seq2  ATCC--TGAACTGAGAAAGCAGA-GGTAGAGGAC-TGTGAGAAAGAG-CA  91

seq1  GGACCTTGTGCTGCTG-AGGGAGCCTGGAGGCCAGCATGACTTCTGGTGT  148
       ||||||||||||||| ||| |||||||| ||||||||||| ||| ||||
seq2  AGACCTTGTGCTGCTGAAGGAAGCCTGGA-GCCAGCATGACATCT-GTGT  139

seq1  GGTAATAGGCACCACAGATGGCCATTTGTCTCTTCTGCCAGTGATAAGGC  198
      ||| ||| ||||||||||||  ||||||||||||||||||||||||||||
seq2  GGTTATA-GCACCACAGATG--CATTTGTCTCTTCTGCCAGTGATAAGGC  186

seq1  TTCTTTGATTGGGGAAAACCAATTTCCCAAGTTTCTGAGGACTGCTGGCT  248
       || |||| |||||||||||| || |||||||||||||| ||||||||||
seq2  -TCATTGAATGGGGAAAACCATTTCCCCAAGTTTCTGAGAACTGCTGGCT  235

seq1  TTTGTCTAACCAGCCATTTGGGGGGGGGCGGTTCTGGGTGAATGGGGACC  298
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TTTGTCTAACCAGCCAATTGGGGGGGGGCCGTTCTGGGTGAATGGGGACC  285

seq1  TGGTTTTGGGGGGGAGGGGTGGGTTCAGATGGGGGTATAGCATGTTTCCA  348
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGGGGGGAAGGGGTGGGTTCAGATGGGGGTATAGCATGTTTCCA  335

seq1  GCTCTATTTATTTTCAATTTCAACTTATAGTTATTTCTTCTTGCTGGTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTTATTTTCAATTTCAACTTATAGTTATTTCTTCTTGCTGGTTA  385

seq1  AAAGTCCAGTTAGGAAAAATTTTTCCCACCATACTGGTAATGCCAGAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAGTTAGGAAAAATTTTTCCCACCATACTGGTAATGCCAGAGAA  435

seq1  TCCATGACAGCATTCAGAATTCAGAATTACCTAGATGGACGTATGGATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACAGCATTCAGAATTCAGAATTACCTAGATGGACGTATGGATTG  485

seq1  TATGAACACTGTAGAGTCTCTAAATGCGCTCCTATCGGATGAAATCAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACACTGTAGAGTCTCTAAATGCGCTCCTATCGGATGAAATCAAAC  535

seq1  GTTTGAACTTTAACAGACTGGATTTCAGGACACATTCCTATCCAGCAGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACTTTAACAGACTGGATTTCAGGACACATTCCTATCCAGCAGCT  585

seq1  TTAAGATGTCTCCCCCGTAACGAAATCCATGAATGAATAGTCATTTGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGTCTCCCCCGTAACGAAATCCATGAATGAATAGTCATTTGGTA  635

seq1  CAAAAATACTTGCTCGACGTGGACTAACTTCCCGAAGAATGCAACATATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACTTGCTCGACGTGGACTAACTTCCCGAAGAATGCAACATATT  685

seq1  TTGATGGTTGACATGTTTTGTTGTTGTTGTTGCTGCTTTGAATTAGGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTTGACATGTTTTGTTGTTGTTGTTGCTGCTTTGAATTAGGTGG  735

seq1  GTTTTTTTTTTTTTTAACACTGCTTTGGAACATTTCACTTATAAAACTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTAACACTGCTTTGGAACATTTCACTTATAAAACTTT  785

seq1  GTACCCTACCTCACATAAAACTGGCAGTTTCCCTCAGAAATTTAAGAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTACCTCACATAAAACTGGCAGTTTCCCTCAGAAATTTAAGAACT  835

seq1  TAGAGAAAGTCGCATGTGTTGAAATAATTCTACCAACGAGAAGAGCTACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGTCGCATGTGTTGAAATAATTCTACCAACGAGAAGAGCTACA  885

seq1  CTTTCTGCACTTAGAGAAACATCAAATGATGCTTGTTTGGTTCTCCTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCACTTAGAGAAACATCAAATGATGCTTGTTTGGTTCTCCTGTT  935

seq1  TCCAGGCTCCTGATCCAGGAGGCAAAGAGTTTTATACTTTTAATAATAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTCCTGATCCAGGAGGCAAAGAGTTTTATACTTTTAATAATAGC  985

seq1  ATTCATCTATAAGGGAAATTAAGAGTATTTCTCTCTTTCAAGTGTCCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTATAAGGGAAATTAAGAGTATTTCTCTCTTTCAAGTGTCCAAA  1035

seq1  AGACGTCAAAACCCTTTGCAACATCCAAATGAAATAATAATAACAAGGCG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTCAAAACCCTTTGCAACATCCAAATGAAATAATAATAACAAGGCG  1085

seq1  CCAATCCCTTACACGCAGTAGGACAGTATTAGTATGAGTAGCCAAAGTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCCTTACACGCAGTAGGACAGTATTAGTATGAGTAGCCAAAGTGA  1135

seq1  ATTC  1152
      ||||
seq2  ATTC  1139