BAC Information

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BAC

Clone NameB6Ng01-147C12
Chromosome10 (Build37)
Map Location 74,682,463 - 74,842,003
singlet/doubletdoublet
Overlap geneSpecc1l, LOC100040670, Adora2a, EG544707
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr
Downstream geneUpb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147C12.bB6Ng01-147C12.g
ACCDH944113DH944114
length9711,076
definitionDH944113|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C12, 5' end.DH944114|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,841,006 - 74,842,003)(74,682,463 - 74,683,536)
sequence
gaattcaaacccaactggagaaacttggaaaataaaaacaagaacaaagg
gtttgagatagagctcagttgtagactacgttgccttgtgaaagatcctc
tgcttaaatccctacaccatcctcctgtgcccacaaaggcctgtgggcct
gtttctttgattaaaattttagcattttgaaagcaggaagaattttgtct
atgccagtggtgcttaatgcagggccttgtaagtagctgtgtgactcaga
gccagttatttaatgactccacgtcgaagacaaacattcagagaggttag
atgcgggaacgggagcgagccggcgcccggggtctgtgtgccagctgcta
gttactgctgcggtgagggtgatttccagttacgtgctaaatttagcact
tgagagcatgttggaactggacaacatatttcctagctggaatgcaatga
ctggtaggcagcattctttgaaaggatcttcagtgggaataatttctcaa
taagttggcaactgcaagagggacatagactaggtcattatggaagatga
aaattagctttttaaaatgaaggactctgggccatatttgtgaatgatgc
taccaggaaatgtagaaggggcaacacagtatgtattgcattctaggcta
tagttacccctttctacattctaaaccttaccttataatcaccaatggga
cttcactcgaggctcagtatggataactaagatttatttgactccagtgg
tcaaacactttccaccccatgtagctgttcctagcctattgcccatctct
aatgcagcacagaaagggaaaagcctggaccagtggctcacatctgtcat
cccagaactcaggagagtgaagtagaaggaagccagcctgggctgtactg
taagtacaaagctggagttatggtgtgagactgtgtctgagaatagccag
agggaggggagggagggaggg
gaattcactcccccaaatggattaaatgacagttataaaaggcttgaggc
tgtgcattcagagctcctgttctttcacaggtctgccttacaccttctac
catgcatgataacaaaaggcctctcaactgtgtgccaaacaaattctttt
ggcatgttacccaaggaaggtttcctgttccagcagctcagaacaaacta
gttgtagaaaattgataacaagaagttgggccgtttctattataaatacc
tggcaatatatatgcagtttgggatatagaggccagttggatttagagga
acaatctagggaaaataaaacaactaaatttctgtgagtggaacatccca
ggcaccaagctacattaggaattagttaagtggttgtcatcaaaatagct
caggaaagggtgtttaatgaggtcttaggtggagctaagggataatgtat
tggaaacttgagcaaaggcactgtagttcccagctacaaagatggtagtg
aatgcagaacttaaggatggggcagatgagtgggcaaggtgcaggatgac
cttattggggggttgcttacagtgaaacgggaagagaaatgacaaagatg
gattgacaagaggagaatgagaaggtttggaaggctttgagacaggcctt
tacaaaagcctggagctggatgttagtggtgcatgtttggaatcccagca
ctcacatggttgatgagcctgagttacagagtgataccatccctcaaaga
gccaaaataaagccagtggctcataggtgtagggttcacaggtgtgatgg
caacactttggaggctgaggcaggacaattcctgtgagttcaaggccatt
tccgggccatgtagtgagttctagactagcttgggctacagaagtagaac
cccatgtcagcaatcaaccaacattcaagcatgacacaaaccccttacag
gtgaaagtgtgctagagaagatacttggagtggtgaaaaaagataataca
gtttggggaaaggtaggttgtatttgtaaaagcaagagaccctgagtctc
tgagaaccttgaaacaagcctttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_74841006_74842003
seq2: B6Ng01-147C12.b_46_1016 (reverse)

seq1  CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT  50
                              |||||||||||||   ||||||||||
seq2  ------------------------CCCTCCCTCCCTC---CCCTCCCTCT  23

seq1  GGCTATTCTTCAGACACAGTCTCACACCATAACTCCAGCTTTGTACTTAC  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTC-TCAGACACAGTCTCACACCATAACTCCAGCTTTGTACTTAC  72

seq1  AGTACAGCCCAGGCTGGCTTCCTTCTACTTCACTCTCCTGAGTTCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCCCAGGCTGGCTTCCTTCTACTTCACTCTCCTGAGTTCTGGGA  122

seq1  TGACAGATGTGAGCCACTGGTCCAGGCTTTTCCC-TTCTGTGCTGCATTA  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGACAGATGTGAGCCACTGGTCCAGGCTTTTCCCTTTCTGTGCTGCATTA  172

seq1  GAGATGGGCAATAGGCTAGGAACAGCTACATGGGGTGGAAAGTGTTTGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGCAATAGGCTAGGAACAGCTACATGGGGTGGAAAGTGTTTGAC  222

seq1  CACTGGAGTCAAATAAATCTTAGTTATCCATACTGAGCCTCGAGTGAAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGTCAAATAAATCTTAGTTATCCATACTGAGCCTCGAGTGAAGT  272

seq1  CCCATTGGTGATTATAAGGTAAGGTTTAGAATGTAGAAAGGGGTAACTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGGTGATTATAAGGTAAGGTTTAGAATGTAGAAAGGGGTAACTAT  322

seq1  AGCCTAGAATGCAATACATACTGTGTTGCCCCTTCTACATTTCCTGGTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAATGCAATACATACTGTGTTGCCCCTTCTACATTTCCTGGTAG  372

seq1  CATCATTCACAAATATGGCCCAGAGTCCTTCATTTTAAAAAGCTAATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCACAAATATGGCCCAGAGTCCTTCATTTTAAAAAGCTAATTTT  422

seq1  CATCTTCCATAATGACCTAGTCTATGTCCCTCTTGCAGTTGCCAACTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCATAATGACCTAGTCTATGTCCCTCTTGCAGTTGCCAACTTAT  472

seq1  TGAGAAATTATTCCCACTGAAGATCCTTTCAAAGAATGCTGCCTACCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATTATTCCCACTGAAGATCCTTTCAAAGAATGCTGCCTACCAGT  522

seq1  CATTGCATTCCAGCTAGGAAATATGTTGTCCAGTTCCAACATGCTCTCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATTCCAGCTAGGAAATATGTTGTCCAGTTCCAACATGCTCTCAA  572

seq1  GTGCTAAATTTAGCACGTAACTGGAAATCACCCTCACCGCAGCAGTAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAATTTAGCACGTAACTGGAAATCACCCTCACCGCAGCAGTAACT  622

seq1  AGCAGCTGGCACACAGACCCCGGGCGCCGGCTCGCTCCCGTTCCCGCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGGCACACAGACCCCGGGCGCCGGCTCGCTCCCGTTCCCGCATC  672

seq1  TAACCTCTCTGAATGTTTGTCTTCGACGTGGAGTCATTAAATAACTGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTCTGAATGTTTGTCTTCGACGTGGAGTCATTAAATAACTGGCT  722

seq1  CTGAGTCACACAGCTACTTACAAGGCCCTGCATTAAGCACCACTGGCATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCACACAGCTACTTACAAGGCCCTGCATTAAGCACCACTGGCATA  772

seq1  GACAAAATTCTTCCTGCTTTCAAAATGCTAAAATTTTAATCAAAGAAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATTCTTCCTGCTTTCAAAATGCTAAAATTTTAATCAAAGAAACA  822

seq1  GGCCCACAGGCCTTTGTGGGCACAGGAGGATGGTGTAGGGATTTAAGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACAGGCCTTTGTGGGCACAGGAGGATGGTGTAGGGATTTAAGCAG  872

seq1  AGGATCTTTCACAAGGCAACGTAGTCTACAACTGAGCTCTATCTCAAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTCACAAGGCAACGTAGTCTACAACTGAGCTCTATCTCAAACC  922

seq1  CTTTGTTCTTGTTTTTATTTTCCAAGTTTCTCCAGTTGGGTTTGAATTC  998
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTTGTTTTTATTTTCCAAGTTTCTCCAGTTGGGTTTGAATTC  971

seq1: chr10_74682463_74683536
seq2: B6Ng01-147C12.g_69_1144

seq1  GAATTCACTCCCCCAAATGGATTAAATGACAGTTATAAAAGGCTTGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCCCCAAATGGATTAAATGACAGTTATAAAAGGCTTGAGGC  50

seq1  TGTGCATTCAGAGCTCCTGTTCTTTCACAGGTCTGCCTTACACCTTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTCAGAGCTCCTGTTCTTTCACAGGTCTGCCTTACACCTTCTAC  100

seq1  CATGCATGATAACAAAAGGCCTCTCAACTGTGTGCCAAACAAATTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGATAACAAAAGGCCTCTCAACTGTGTGCCAAACAAATTCTTTT  150

seq1  GGCATGTTACCCAAGGAAGGTTTCCTGTTCCAGCAGCTCAGAACAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTACCCAAGGAAGGTTTCCTGTTCCAGCAGCTCAGAACAAACTA  200

seq1  GTTGTAGAAAATTGATAACAAGAAGTTGGGCCGTTTCTATTATAAATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGAAAATTGATAACAAGAAGTTGGGCCGTTTCTATTATAAATACC  250

seq1  TGGCAATATATATGCAGTTTGGGATATAGAGGCCAGTTGGATTTAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATATATATGCAGTTTGGGATATAGAGGCCAGTTGGATTTAGAGGA  300

seq1  ACAATCTAGGGAAAATAAAACAACTAAATTTCTGTGAGTGGAACATCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTAGGGAAAATAAAACAACTAAATTTCTGTGAGTGGAACATCCCA  350

seq1  GGCACCAAGCTACATTAGGAATTAGTTAAGTGGTTGTCATCAAAATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAAGCTACATTAGGAATTAGTTAAGTGGTTGTCATCAAAATAGCT  400

seq1  CAGGAAAGGGTGTTTAATGAGGTCTTAGGTGGAGCTAAGGGATAATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGGGTGTTTAATGAGGTCTTAGGTGGAGCTAAGGGATAATGTAT  450

seq1  TGGAAACTTGAGCAAAGGCACTGTAGTTCCCAGCTACAAAGATGGTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTTGAGCAAAGGCACTGTAGTTCCCAGCTACAAAGATGGTAGTG  500

seq1  AATGCAGAACTTAAGGATGGGGCAGATGAGTGGGCAAGGTGCAGGATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAACTTAAGGATGGGGCAGATGAGTGGGCAAGGTGCAGGATGAC  550

seq1  CTTATTGGGGGGTTGCTTACAGTGAAACGGGAAGAGAAATGACAAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGGGGGGTTGCTTACAGTGAAACGGGAAGAGAAATGACAAAGATG  600

seq1  GATTGACAAGAGGAGAATGAGAAGGTTTGGAAGGCTTTGAGACAGGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACAAGAGGAGAATGAGAAGGTTTGGAAGGCTTTGAGACAGGCCTT  650

seq1  TACAAAAGCCTGGAGCTGGATGTTAGTGGTGCATGTTTGGAATCCCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGCCTGGAGCTGGATGTTAGTGGTGCATGTTTGGAATCCCAGCA  700

seq1  CTCACATGGTTGATGAGCCTGAGTTACAGAGTGATACCATCCCTCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGGTTGATGAGCCTGAGTTACAGAGTGATACCATCCCTCAAAGA  750

seq1  GCCAAAATAAAGCCAGTGGCTCATAGGTGTAGGGTTCACAGGTGTGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATAAAGCCAGTGGCTCATAGGTGTAGGGTTCACAGGTGTGATGG  800

seq1  CAACACTTTGGAGGCTGAGGCAGGACAATTCCTGTGAGTTCAAGGCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTTGGAGGCTGAGGCAGGACAATTCCTGTGAGTTCAAGGCCATT  850

seq1  TCCGGGCCATGTAGTGAGTTCTAGACTAGCTTGGGCTACAG-AGTAGAAC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCGGGCCATGTAGTGAGTTCTAGACTAGCTTGGGCTACAGAAGTAGAAC  900

seq1  CCCATGTCAGCAAATCAACCAACAATTCAAGCAATGACAACAAACCCCTA  949
      ||||||||||| ||||||||||| |||||||| ||||| |||||||||| 
seq2  CCCATGTCAGC-AATCAACCAAC-ATTCAAGC-ATGAC-ACAAACCCCTT  946

seq1  ACAGGTGAAAGTGTGCTAGAGAAAGAATACTTGGAGT-GTGATAAAAAGA  998
      |||||||||||||||||||||||   ||||||||||| |||| |||||||
seq2  ACAGGTGAAAGTGTGCTAGAGAA--GATACTTGGAGTGGTGA-AAAAAGA  993

seq1  TTAATACAGTTTGGGGAAA-GTAGGTTGTATTTGTAGAAAGCACAGAAGA  1047
       |||||||||||||||||| |||||||||||||||| |||||| || |||
seq2  -TAATACAGTTTGGGGAAAGGTAGGTTGTATTTGTA-AAAGCA-AG-AGA  1039

seq1  CCCTGAAGTCATCTGAGAA------------GCTTTGAG  1074
      ||||| |||| ||||||||             |||||||
seq2  CCCTG-AGTC-TCTGAGAACCTTGAAACAAGCCTTTGAG  1076