BAC Information

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BAC

Clone NameB6Ng01-147D23
Chromosome14 (Build37)10 (Build37)
Map Location 88,559,867 - 88,561,013104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665324, Tdrd3, LOC100043317, LOC100043780
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147D23.bB6Ng01-147D23.g
ACCDH944181DH944182
length1,139784
definitionDH944181|Mus musculus domesticus DNA, BAC clone: B6Ng01-147D23, 5' end.DH944182|Mus musculus domesticus DNA, BAC clone: B6Ng01-147D23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,559,867 - 88,561,013)(104,053,903 - 104,054,363)
sequence
gaattcccaaagaatcttctatgattacgaccaatatacaacttttgatc
agtgttgtttgatttatgaaacgattgcttccagggcggcagggaccatg
accatgccatttaccatacaaatggcactcaatattattttaacattttc
cattgttatatttgacatatatatccaatgagtacaagtaaaatttaagg
tgataaaagtaacaaacttgaaaattgatcaacagtgcaaattttactga
aatgttcatcagttactataatactgtgaaaactgtattacttcagtttc
attattcttgaaacttgtgtgagaataacattggaaataagataattctg
agtcaccaaaaagtgaaattgtttcaggaacatgacttgccttcatctac
tctcatttccctacaaatatataaatgtaatatttttaaaacattttaat
atggtaggtggaacaatcctcaatacagaatgttccttgtttgacctaca
gttctgatgatattccaagagaggagagatgaatctgaacttagttttac
ttatagtttcttattttgtatgatgtttctttttttatatatgatttctt
attttgtataaggtagaagagttaaacaacatcgaaaaattatgaaaaga
aagggtaactgaggagggcaatgactgtaatgtaaataaataaataaaat
aatatgtgtgtgtgtatacatatataattattttatttattcacactcca
gtcattgcccatattatggtaaaatctcatgtgcgctaagaagaaaacag
agcctgaagattcagattccagttgagttggatgaaatataagtattaat
cctggagctatttaagaatctaggtatgcatgagatagaaaagaggggaa
aaaaggattagaaagagtaaggaattagaataagtatgacaacatgaatt
tacataggcagaaaaacataaaggtttgaggagtacatagagaaacccac
ataaagtacaaacctttcaaattcatgattactgttagcacattctgtta
cgttgtcttcctaggtgaatagaagtccagaagagattactgtcagcact
ccttgaatttccctagcctccctacatagtaatccagtt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgatggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctc
agaaaattggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgctccaactggtaagaaggacacatgctccacta
tgttcatagcagcattatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggttattagcccaaaac
ctaggatacccaagatataagatacaatttcctaaacacatgaaactctg
tggcttttttcaagatgttttaacattatttattttttcccctgtatccc
ctcttcagcttatacatctatttcccaaatatttaatcccttcttatctt
aagacatacacaaaacacatgtaaacacatgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88559867_88561013
seq2: B6Ng01-147D23.b_45_1183

seq1  GAATTCCCAAAGAATCTTCTATGATTACGACCAATATACAACTTTTGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAGAATCTTCTATGATTACGACCAATATACAACTTTTGATC  50

seq1  AGTGTTGTTTGATTTATGAAACGATTGCTTCCAGGGCGGCAGGGACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTTTGATTTATGAAACGATTGCTTCCAGGGCGGCAGGGACCATG  100

seq1  ACCATGCCATTTACCATACAAATGGCACTCAATATTATTTTAACATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCATTTACCATACAAATGGCACTCAATATTATTTTAACATTTTC  150

seq1  CATTGTTATATTTGACATATATATCCAATGAGTACAAGTAAAATTTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTATATTTGACATATATATCCAATGAGTACAAGTAAAATTTAAGG  200

seq1  TGATAAAAGTAACAAACTTGAAAATTGATCAACAGTGCAAATTTTACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGTAACAAACTTGAAAATTGATCAACAGTGCAAATTTTACTGA  250

seq1  AATGTTCATCAGTTACTATAATACTGTGAAAACTGTATTACTTCAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCATCAGTTACTATAATACTGTGAAAACTGTATTACTTCAGTTTC  300

seq1  ATTATTCTTGAAACTTGTGTGAGAATAACATTGGAAATAAGATAATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTGAAACTTGTGTGAGAATAACATTGGAAATAAGATAATTCTG  350

seq1  AGTCACCAAAAAGTGAAATTGTTTCAGGAACATGACTTGCCTTCATCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCAAAAAGTGAAATTGTTTCAGGAACATGACTTGCCTTCATCTAC  400

seq1  TCTCATTTCCCTACAAATATATAAATGTAATATTTTTAAAACATTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCCCTACAAATATATAAATGTAATATTTTTAAAACATTTTAAT  450

seq1  ATGGTAGGTGGAACAATCCTCAATACAGAATGTTCCTTGTTTGACCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGGTGGAACAATCCTCAATACAGAATGTTCCTTGTTTGACCTACA  500

seq1  GTTCTGATGATATTCCAAGAGAGGAGAGATGAATCTGAACTTAGTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATGATATTCCAAGAGAGGAGAGATGAATCTGAACTTAGTTTTAC  550

seq1  TTATAGTTTCTTATTTTGTATGATGTTTCTTTTTTTATATATGATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTTCTTATTTTGTATGATGTTTCTTTTTTTATATATGATTTCTT  600

seq1  ATTTTGTATAAGGTAGAAGAGTTAAACAACATCGAAAAATTATGAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATAAGGTAGAAGAGTTAAACAACATCGAAAAATTATGAAAAGA  650

seq1  AAGGGTAACTGAGGAGGGCAATGACTGTAATGTAAATAAATAAATAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAACTGAGGAGGGCAATGACTGTAATGTAAATAAATAAATAAAAT  700

seq1  AATATGTGTGTGTGTATACATATATAATTATTTTATTTATTCACACTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGTGTGTGTATACATATATAATTATTTTATTTATTCACACTCCA  750

seq1  GTCATTGCCCATATTATGGTAAAATCTCATGTGCGCTAAGAAGAAAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGCCCATATTATGGTAAAATCTCATGTGCGCTAAGAAGAAAACAG  800

seq1  AGCCTGAAGATTCAGATTCCAGTTGAGTTGGATGAAATATAAGTATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAGATTCAGATTCCAGTTGAGTTGGATGAAATATAAGTATTAAT  850

seq1  CCTGGAGCTATTTAAGAATCTAGGTATGCATGAGATAGAAAAGAGGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCTATTTAAGAATCTAGGTATGCATGAGATAGAAAAGAGGGGAA  900

seq1  AAAAGGATTAGAAAGAGTAAGGAATTAGAATAAGTATGACAACATGAATT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAGGATTAGAAAGAGTAAGGAATTAGAATAAGTATGACAACATGAA-T  949

seq1  TTACATAGGCAGAAAAAACAT-AAGGTTTGAGGAGTACATAGAGAAACAC  999
      |||||||||||| |||||||| |||||||||||||||||||||||||| |
seq2  TTACATAGGCAG-AAAAACATAAAGGTTTGAGGAGTACATAGAGAAACCC  998

seq1  ACATAAAGTACAAACCTTTCAAATTCATGATTACTGTTAGCACATTCTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGTACAAACCTTTCAAATTCATGATTACTGTTAGCACATTCTGT  1048

seq1  TACGTTGTTCTTCCTAGGTGAATAG-AGTCCAGAAGAGATTTTAACTGTT  1098
      ||||||| ||||||||||||||||| |||||||||||||||   |||| |
seq2  TACGTTG-TCTTCCTAGGTGAATAGAAGTCCAGAAGAGATT---ACTG-T  1093

seq1  CAGGCACTCCTTGAATTTCCTTAGCCTCTCTACAATTAGTAATCCAGTT  1147
      || ||||||||||||||||| ||||||| |||||  |||||||||||||
seq2  CA-GCACTCCTTGAATTTCCCTAGCCTCCCTACA--TAGTAATCCAGTT  1139

seq1: chr10_104053903_104054363
seq2: B6Ng01-147D23.g_67_538 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||| ||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAATGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGAGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACGGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCA-CATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCC  339
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCATCATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGAC  350

seq1  ATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTC  389
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTCTGACTGGTGTGAGGTGGAATCTTAGGGTTGTTTTGATTTGCATTTC  400

seq1  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTC  450

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  472