BAC Information

Click to search

BAC

Clone NameB6Ng01-147N16
Chromosome10 (Build37)5 (Build37)
Map Location 104,432,857 - 104,433,39967,592,008 - 67,593,007
singlet/doubletsingletsinglet
Overlap geneLOC100042383
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneTmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147N16.bB6Ng01-147N16.g
ACCDH944618DH944619
length968992
definitionDH944618|Mus musculus domesticus DNA, BAC clone: B6Ng01-147N16, 5' end.DH944619|Mus musculus domesticus DNA, BAC clone: B6Ng01-147N16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,432,857 - 104,433,399)(67,592,008 - 67,593,007)
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttactgcgtttgcgatttg
tacgagggatagttatatcatgttaagcgtattttacaaccttggttatt
tgtttcatgttgaacatgagattttatttgtgtcaagttgacaaggggtg
gattgtatggctttcctg
gaattcttggtttatttggttgcttttgggtctcttgatgttctttgctt
gatgcatttgattatttattaatggattctttttaaagttgaagaaatag
cttacacagtaacttttataactagttgaagtgagtgttatccactttgg
aaaactgtgtggtagtgtggactgatacttacatacgaccaacaactgca
ttcctagatatacagacaaaagaaacacctagaaaaattccccaaaagac
atttataagaatgctcacagcagctttattcatacaagttgtggtggttt
caatgagaagggacacccccccccccaccaccaccactatagactaaatt
tgaaaacttgtttcccagttggtgggactgtttaggaaggataaggaggt
gtggccttattggaggtgtgtcactctgggtgggctttaaggtttcaaaa
gctcatgtcaggctcaggcttgttctctctctctctttctctccctctct
cctgcttgtggatcagatgtaagctctccagcaccatgcctgcttcacca
ctgccatacttcctgccatgatggttatgcatttaccctctgaaactgga
agcaaatgtccaattaaatgtcttctttttaataaattgattgctgtctc
ttcacagctataggaaagaaactaagacatttggttttaactagaaacta
ccaaacactgtcaataagagtgtgtctacatagatgatggcataactgtg
ctgtgtgttatattttatactatgacacagagactgggaccaaacaagga
aaagttgcatgcaataagatgagtgtattatagaagcataactaaaacac
caggcactaaagaaagcacactacatttatttctatgctatccagaatct
gaaatccctgtggtctctaatcttgttaccggaaggaaactcaagggaga
cctttattattttatatattctaattatttatcaatattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104432857_104433399
seq2: B6Ng01-147N16.b_469_1011 (reverse)

seq1  CAGGAATAGCCACTACAATCCACCCCTTGTCAACTTGACACAAATAATAT  50
      |||||| ||||| |||||||||||||||||||||||||||||||||| ||
seq2  CAGGAA-AGCCA-TACAATCCACCCCTTGTCAACTTGACACAAATAAAAT  48

seq1  CTCATGTTC-ACATGAAAC-AATAA-CAAGGTTGT-AAATACGCCTAACA  96
      ||||||||| ||||||||| ||||| ||||||||| |||||||| |||||
seq2  CTCATGTTCAACATGAAACAAATAACCAAGGTTGTAAAATACGCTTAACA  98

seq1  TGATATAACTATCCCTCGTAC-AATCGCAAACGCATTAGTAAATTTACAA  145
      ||||||||||||||||||||| ||||||||||||   |||||||||||||
seq2  TGATATAACTATCCCTCGTACAAATCGCAAACGC---AGTAAATTTACAA  145

seq1  TGGGCATTCATATTACTTTATAATCCTCGTTTCTGCAACTGGTTACGTGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTCATATTACTTTATAATCCTCGTTTCTGCAACTGGTTACGTGG  195

seq1  CCTTAATTGGTATTTATAACTACCTTCCTCTACTACCCATTCTGTATTTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTGGTATTTATAACTACCTTCCTCTACTACCCATTCTGTATTTC  245

seq1  CTTCACCTTCAGCCAGCACCTCAGCAGGTCTTGGCTCTTTTCCTGGAGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTTCAGCCAGCACCTCAGCAGGTCTTGGCTCTTTTCCTGGAGGA  295

seq1  TTGACCCATACCTTCATTCCTGATGGGTCTGCGTCCTTTGTCATCCTGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCATACCTTCATTCCTGATGGGTCTGCGTCCTTTGTCATCCTGCT  345

seq1  TGGATTAGGCTGTTGTAGTTTCCCATTGACTTTAATCACAGGACATGGTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAGGCTGTTGTAGTTTCCCATTGACTTTAATCACAGGACATGGTA  395

seq1  GTACTAAGAGACGCCCTAAGGGATCTCCTGCACTCCAGACATAATCTTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAGAGACGCCCTAAGGGATCTCCTGCACTCCAGACATAATCTTGC  445

seq1  TTACCACCATTGTGAAGAGGTAATCCAATTTCCCCATGGTAATCTGGATC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACCATTGTGAAGAGGTAATCCAATTTCCCCATGGTAATCTGGATC  495

seq1  TATCACCCCTCCTAACACTGTTATTCCTTTTTTAGCCTGTTGGTTTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCCCTCCTAACACTGTTATTCCTTTTTTAGCCTGTTGGTTTAA  543

seq1: chr5_67592008_67593007
seq2: B6Ng01-147N16.g_71_1062 (reverse)

seq1  TATAATATATAATAAATAATGTATAGATAATATAAAAATAATAAAATGTC  50
      |||||||| | |||||||||   ||||  |||| |||||||| ||| |||
seq2  TATAATAT-TGATAAATAAT---TAGAATATAT-AAAATAAT-AAAGGTC  44

seq1  TCCCTTGAGTTTCCTTCCGGTAACAAAGATTAGAGACCACAGGGATTTTC  100
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  TCCCTTGAGTTTCCTTCCGGTAAC-AAGATTAGAGACCACAGGGA-TTTC  92

seq1  AGATTCTGGATAGCATAGAAATAAAATGTAGTGTGCTTTCTTTTGTGCCT  150
      |||||||||||||||||||||| |||||||||||||||||||| ||||| 
seq2  AGATTCTGGATAGCATAGAAAT-AAATGTAGTGTGCTTTCTTTAGTGCC-  140

seq1  TGGTGTTTTAGTTATGCTTCTATAATACACTCATCTTATTGCATGCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTTAGTTATGCTTCTATAATACACTCATCTTATTGCATGCAACT  190

seq1  TTACCTTGTTTGGTCCCAGTCTCTGTGTCATAGTAT-AAATATAACACAC  249
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTCCTTGTTTGGTCCCAGTCTCTGTGTCATAGTATAAAATATAACACAC  240

seq1  AGCACAGTTATGCCATCATCTATGTAGACACACTCTTATTGACAGTGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTTATGCCATCATCTATGTAGACACACTCTTATTGACAGTGTTT  290

seq1  GGTAGTTTCTAGTTAAAACC-AATGTCTTAGTTTCTTTCCTATAGCTGTG  348
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTAGTTTCTAGTTAAAACCAAATGTCTTAGTTTCTTTCCTATAGCTGTG  340

seq1  AAGAGACAGCAATCAATTTATTAAAAAGAAGACATTTAATTGGACATTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAGCAATCAATTTATTAAAAAGAAGACATTTAATTGGACATTTG  390

seq1  CTTCCAGTTTCAGAGGGTAAATGCATAACCATCATGGCAGGAAGTATGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTTTCAGAGGGTAAATGCATAACCATCATGGCAGGAAGTATGGC  440

seq1  AGTGGTGAAGCAGGCATGGTGCTGGAGAGCTTACATCTGATCCACAAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAAGCAGGCATGGTGCTGGAGAGCTTACATCTGATCCACAAGCA  490

seq1  GGAGAGAGGGAGAGAAAGAGAGAGAGAGAACAAGCCTGAGCCTGACATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGGGAGAGAAAGAGAGAGAGAGAACAAGCCTGAGCCTGACATGA  540

seq1  GCTTTTGAAACCTTAAAGCCCACCCAGAGTGACACACCTCCAATAAGGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAAACCTTAAAGCCCACCCAGAGTGACACACCTCCAATAAGGCC  590

seq1  ACACCTCCTTATCCTTCCTAAACAGTCCCACCAACTGGGAAACAAGTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCTTATCCTTCCTAAACAGTCCCACCAACTGGGAAACAAGTTTT  640

seq1  CAAATTTAGTCTATAGTGGTGGTGGTGGGGGGGGGGGTGTCCCTTCTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAGTCTATAGTGGTGGTGGTGGGGGGGGGGGTGTCCCTTCTCAT  690

seq1  TGAAACCACCACAACTTGTATGAATAAAGCTGCTGTGAGCATTCTTATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCACCACAACTTGTATGAATAAAGCTGCTGTGAGCATTCTTATAA  740

seq1  ATGTCTTTTGGGGAATTTTTCTAGGTGTTTCTTTTGTCTGTATATCTAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTTGGGGAATTTTTCTAGGTGTTTCTTTTGTCTGTATATCTAGG  790

seq1  AATGCAGTTGTTGGTCGTATGTAAGTATCAGTCCACACTACCACACAGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTTGTTGGTCGTATGTAAGTATCAGTCCACACTACCACACAGTT  840

seq1  TTCCAAAGTGGATAACACTCACTTCAACTAGTTATAAAAGTTACTGTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGTGGATAACACTCACTTCAACTAGTTATAAAAGTTACTGTGTA  890

seq1  AGCTATTTCTTCAACTTTAAAAAGAATCCATTAATAAATAATCAAATGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTCTTCAACTTTAAAAAGAATCCATTAATAAATAATCAAATGCA  940

seq1  TCAAGCAAAGAACATCAAGAGACCCAAAAGCAACCAAATAAACCAAGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAAAGAACATCAAGAGACCCAAAAGCAACCAAATAAACCAAGAAT  990

seq1  TC  1000
      ||
seq2  TC  992