BAC Information

Click to search

BAC

Clone NameB6Ng01-148A09
Chromosome1 (Build37)10 (Build37)
Map Location 132,833,716 - 132,833,89043,716,653 - 43,717,714
singlet/doubletsingletsinglet
Overlap geneIl19
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20
Downstream geneIl10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148A09.bB6Ng01-148A09.g
ACCDH944740DH944741
length841,045
definitionDH944740|Mus musculus domesticus DNA, BAC clone: B6Ng01-148A09, 5' end.DH944741|Mus musculus domesticus DNA, BAC clone: B6Ng01-148A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(132,833,716 - 132,833,890)(43,716,653 - 43,717,714)
sequence
aaggccagcttaagaaacacagaaacatttgtgtatgcgcgcgcgcgcgc
gcgcgcgcgcgcgcgtgtgtgtgtgtgtgtgtgt
gaattcaaggccagccaggtctacacaactaaatccaggacagccagagc
tacacaaagaaaccctgtctcaaaacaaaacaaaaggtacatggtaaaca
aatagaaacttattgcacatgtacaacccctgtaaaaatacaacctgagc
ccctcactgcctctaggtttagaaacatcccatctaaataagaattagta
cttaccatagagtctgataaggacattccagaaaaggaatggcctgggtc
ataccggcttgctttgaaaaggcccaggaagtccgcgtccacgctcccaa
cattcggcaggtttgacttcagaataccttccacgccatcgctgttcttc
agtttgggtaagtctgaaaggttgttttctggcaattgtaggttgccctg
agaattcacatcttccttgcttccctctttttgtgggtacttttccatgt
ggctggaacccagacgagatgtatttgatgaattgaaattgaagaccttt
aaggagttgtggggtgcaaggtgtggctgttctttgtctgagccacaggg
caggccaccctccttcctgggctgtaccactgatgactgagatacggagc
tgttctgagaagtgctaaaagatgtgctcattgtgttgactgacgtcacg
gagggagaaaagactttgtcttgtggcagagaagaaagcatgcttgagaa
aagcgtgctgttttctagccgtgacctcttaacgccgccgctgttgatgt
ccctgttctccttgtcacttgcttctgaagtggtctgtggctcgctcttc
ccattactgttagtgtgcaaggacttgaagacgatgctctgctcggtgga
tgcacgcttggctctcagtttgatagggggtcgttgttctgcaacaagtg
caaagctggtgacacttctgccaggcttcttctctccctaaacatggtga
caagttgggatcaacacctttccaactgtctcgtgatgggagcatacgaa
tggatgggctgagagtttggtaccgggcctctttctttttctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132833716_132833890
seq2: B6Ng01-148A09.b_47_124 (reverse)

seq1  --ACACACACACACACACACACGCGCGCGCGCGCGCGCGCATGCATGCAT  48
        |||||||||||||||||| |||||||||||||||||||  ||  ||||
seq2  ACACACACACACACACACACGCGCGCGCGCGCGCGCGCGCGCGCGCGCAT  50

seq1  CCACACACATTT---------TTAAAAGAAAAAAGAAAGGGAGAGAGAAA  89
       |||| |  |||         ||||                         
seq2  ACACAAATGTTTCTGTGTTTCTTAAGCT----------------------  78

seq1  AGGAAAAGAGGGGAAACAAGGTCATATGATAAAGATCCAAATTCACTAAC  139
                                                        
seq2  --------------------------------------------------  78

seq1  TTCTTTCCTTACTCCATATCAGCTGTTTCTTAAGCT  175
                                          
seq2  ------------------------------------  78

seq1: chr10_43716653_43717714
seq2: B6Ng01-148A09.g_69_1113

seq1  GAATTCAAGGCCAGCCAGGTCTACACAACTAAATCCAGGACAGCCAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCAGGTCTACACAACTAAATCCAGGACAGCCAGAGC  50

seq1  TACACAAAGAAACCCTGTCTCAAAACAAAACAAAAGGTACATGGTAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAGAAACCCTGTCTCAAAACAAAACAAAAGGTACATGGTAAACA  100

seq1  AATAGAAACTTATTGCACATGTACAACCCCTGTAAAAATACAACCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACTTATTGCACATGTACAACCCCTGTAAAAATACAACCTGAGC  150

seq1  CCCTCACTGCCTCTAGGTTTAGAAACATCCCATCTAAATAAGAATTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTGCCTCTAGGTTTAGAAACATCCCATCTAAATAAGAATTAGTA  200

seq1  CTTACCATAGAGTCTGATAAGGACATTCCAGAAAAGGAATGGCCTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATAGAGTCTGATAAGGACATTCCAGAAAAGGAATGGCCTGGGTC  250

seq1  ATACCGGCTTGCTTTGAAAAGGCCCAGGAAGTCCGCGTCCACGCTCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGGCTTGCTTTGAAAAGGCCCAGGAAGTCCGCGTCCACGCTCCCAA  300

seq1  CATTCGGCAGGTTTGACTTCAGAATACCTTCCACGCCATCGCTGTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGGCAGGTTTGACTTCAGAATACCTTCCACGCCATCGCTGTTCTTC  350

seq1  AGTTTGGGTAAGTCTGAAAGGTTGTTTTCTGGCAATTGTAGGTTGCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGTAAGTCTGAAAGGTTGTTTTCTGGCAATTGTAGGTTGCCCTG  400

seq1  AGAATTCACATCTTCCTTGCTTCCCTCTTTTTGTGGGTACTTTTCCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCACATCTTCCTTGCTTCCCTCTTTTTGTGGGTACTTTTCCATGT  450

seq1  GGCTGGAACCCAGACGAGATGTATTTGATGAATTGAAATTGAAGACCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAACCCAGACGAGATGTATTTGATGAATTGAAATTGAAGACCTTT  500

seq1  AAGGAGTTGTGGGGTGCAAGGTGTGGCTGTTCTTTGTCTGAGCCACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTGTGGGGTGCAAGGTGTGGCTGTTCTTTGTCTGAGCCACAGGG  550

seq1  CAGGCCACCCTCCTTCCTGGGCTGTACCACTGATGACTGAGATACGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACCCTCCTTCCTGGGCTGTACCACTGATGACTGAGATACGGAGC  600

seq1  TGTTCTGAGAAGTGCTAAAAGATGTGCTCATTGTGTTGACTGACGTCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGAGAAGTGCTAAAAGATGTGCTCATTGTGTTGACTGACGTCACG  650

seq1  GAGGGAGAAAAGACTTTGTCTTGTGGCAGAGAAGAAAGCATGCTTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAAAAGACTTTGTCTTGTGGCAGAGAAGAAAGCATGCTTGAGAA  700

seq1  AAGCGTGCTGTTTTCTAGCCGTGACCTCTTAACGCCGCCGCTGTTGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTGCTGTTTTCTAGCCGTGACCTCTTAACGCCGCCGCTGTTGATGT  750

seq1  CCCTGTTCTCCTTGTCACTTGCTTCTGAAGTGGTCTGTGGCTCGCTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTCCTTGTCACTTGCTTCTGAAGTGGTCTGTGGCTCGCTCTTC  800

seq1  CCATTACTGTTAGTGTGCAAGGACTTGAAGACGATGCTCTGCTCGGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACTGTTAGTGTGCAAGGACTTGAAGACGATGCTCTGCTCGGTGGA  850

seq1  TGCACGCTTGGCTCTCAGTTTGGATATGGGGTCGTGGTTCTGCAACAAGT  900
      ||||||||||||||||||||| |||| |||||||| ||||||||||||||
seq2  TGCACGCTTGGCTCTCAGTTT-GATAGGGGGTCGTTGTTCTGCAACAAGT  899

seq1  GCAAAGCTGGTGACACCTCTGCCAGGCTTTCCTTCTTCTTCCCTAAACCA  950
      |||||||||||||||| ||||||||||||  |||||   |||||||||  
seq2  GCAAAGCTGGTGACACTTCTGCCAGGCTT--CTTCT--CTCCCTAAAC--  943

seq1  ATGGTGAACACGTTGGGATCAAACACCTTTTCCAAACTGTCCTCGTGAAT  1000
      |||||| ||| ||||||||| |||||||||  | |||||| |||||| ||
seq2  ATGGTG-ACAAGTTGGGATC-AACACCTTT--CCAACTGT-CTCGTG-AT  987

seq1  GGGAGGCATAGCGAAGTGAGGGGCTGGAGAGTTTGGGACCCGGGCCTTCT  1050
      |||| ||||| ||||  || ||||| |||||||||| | ||||||||  |
seq2  GGGA-GCATA-CGAATGGATGGGCT-GAGAGTTTGGTA-CCGGGCCTCTT  1033

seq1  TCTTTTTCTGGG  1062
      ||||||||||||
seq2  TCTTTTTCTGGG  1045