BAC Information

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BAC

Clone NameB6Ng01-148A11
Chromosome1 (Build37)10 (Build37)
Map Location 72,404,834 - 72,405,157112,505,150 - 112,506,326
singlet/doubletsingletsinglet
Overlap geneXrcc5
Upstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169
Downstream geneMarch4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148A11.bB6Ng01-148A11.g
ACCDH944744DH944745
length9981,170
definitionDH944744|Mus musculus domesticus DNA, BAC clone: B6Ng01-148A11, 5' end.DH944745|Mus musculus domesticus DNA, BAC clone: B6Ng01-148A11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,404,834 - 72,405,157)(112,505,150 - 112,506,326)
sequence
gaattctacaggcagagcttaatttaagaaggagtccagaagataacatt
actgaaatatgactagtagacttcattcatgaagtttaaaagggaaatag
ctctgttggaaactcatgtcaccttcagatgcaggctctgttctgctcat
tatcatcaacatttgaaggaggttaatttaaaaaggttagaaaaagtgtt
ttgtctggtggaggtgatttcagagcaaagtaatgttcaggctgtgccat
ggttattccttactgactatttttccaggtttatactgagaatacagagc
agaaacaagcagaaacctgcagaaaagaatacacctgggtcagggagaag
tgtgaatgaatttagagttactgtccaagcagctgtaaataaaataactt
aggacaatgtgatagaatcatgaaagaagttacctcagttaggtaataga
gggtttgtagagggaaaactggaagggagataacatttgaaatgttaaaa
aaaatagccaataaaaagaaacaaaaacaaaaaaacaaacaaacagacaa
acaagagaaaactttgtcctttgttctagaacaataggaaaagagcttcc
aggggtaaatattactcaatctgtctgtctgtctgtctgtctgtctgtct
gtctgtctacctattctacctatcagtctgactatccatccattcatcta
ttcatctatatgtctacctatcaccaattataaatatatattttcttgct
ttaaacgtttgtgtgtgtgtatgtgtatatgtgtatttttatgaaggaat
aaaactatgaaacagagcattattcaatttgtttccatggaagggtatag
atagtccatcaaattccttcttcaaggcttgagtggcagatgggtaaagc
tcctactccaggaaagggagataccacagcagtccagttagtactgaaaa
actggaggactcctgaaagattatgggaaataaagaatcctgaagaac
gaattccaatctatgcatgtgatatgtgccttgtactatgagtatatgct
gcacgatactatgagatgaatgttaacattacagtaaaatcgagatcctg
cagataaagattcagccttgtggtattttagcaaccacgtgaaatgaata
acatcggcacgctaccatgtcgttcagtagaatcattcggatactaaact
aagattagcgtaaatatagttttagcttgttaagatttcacatggaatgg
gcaaaatgacttctctcatgtgattccaattataaacgaggaaataaaga
caagatttaggcaccatagggtgtaaaagaaaaaaagacaaagtgtatcc
acataaagtagattcagtttatgagggaaactgtgaatttcactaagttt
tcctgaaaaccttacagaataatcccttgctctgttggggacacattcca
ataccccagggagttctggaaattatcagaaaatacagagcccacagtcc
gtggtttccctatgtgcttattactataagatgcattcaaaagctaggca
cagcgagagacaacagtaatgactaatataaaatgctgaataattataac
atatggagagttactttattattcttatgttattccaagtccagattttt
tgccgtatgtttttaaccatggcatacttcaggtaactgcagctttggag
agagtaactaggcaaacatgcactgttatgtttattgtaaacaccaggtc
taagttttaatttgcctcaacatatatcattaaatgcattcacaaaagga
tcaccatatctagaccgtaatgacaattccaggattgtttttcaattgtt
taaagctgcaacatcagcatttattttgtttaaatttctaaaattatcta
acatgctaataattcaattgaattatgaattatctgcactgtatggttaa
attttatttgccatcacagaaagataattaggcctttgcatagaaatgtt
gatagaagaaatagaaatattttctaaagtttatttcatcgcacgtgaga
tggcctagtactgtatcatgccagggagtaattctactatcaaatgcact
gcaacaaggtgccacttgaaatattttccatcttgaaaataagaattcca
tactgggaagttggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72404834_72405157
seq2: B6Ng01-148A11.b_572_825

seq1  AAACAAACAAACAAACAAACAGACAAACAAACAAACATCCCCTAAAGCCA  50
      ||||||| |||||||||||||||||||||                    |
seq2  AAACAAAAAAACAAACAAACAGACAAACA--------------------A  30

seq1  GAGACCGAAC---ATCCCTTCATCTA-AACAGAAGGAAATCTAGAAGTCT  96
      ||||   |||    ||| ||  |||| ||||  ||||||   |||     
seq2  GAGA--AAACTTTGTCCTTTGTTCTAGAACAATAGGAAA---AGA-----  70

seq1  GGGCACAGTTTCAGGAGGAGTGGCAGAACAGTGCCTTAGACATCATCTGT  146
        ||    || |||| | |       || |     |||  ||  ||||||
seq2  --GC----TTCCAGGGGTA-------AATA-----TTACTCA--ATCTGT  100

seq1  CACTGGGTGTGGGTCCCAGGGCTTGGCAGGCAGTGGTAGGAAGATCGCCA  196
        |||  |||  |||     |  || | | | ||  ||       |    
seq2  --CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT-CTA-------CCTAT  140

seq1  TCTCCTTTTTTTTTTTTTTCCCCATGAATTGA---CATCATCAGTAAGTA  243
      ||| | | |   | |   |  ||||  ||| |     |||||  || || 
seq2  TCTACCTATCAGTCTGACTATCCATCCATTCATCTATTCATCTATATGTC  190

seq1  GGCAAGGGAC---TTTTAGAATGATTTTGTGTTTGGAGGCCAGATAAATT  290
        |     ||   || || |   || || | ||     ||        ||
seq2  TACCTATCACCAATTATAAATATATATTTTCTT-----GC-------TTT  228

seq1  AGAGGACCATGTTGGTGTGTGTGTGTATGTGTAT  324
      |       | |||  |||||||||||||||||||
seq2  A------AACGTT--TGTGTGTGTGTATGTGTAT  254

seq1: chr10_112505150_112506326
seq2: B6Ng01-148A11.g_67_1236

seq1  GAATTCCAATCTATGCATGTGATATGTGCCTTGTACTATGAGTATATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTATGCATGTGATATGTGCCTTGTACTATGAGTATATGCT  50

seq1  GCACGATACTATGAGATGAATGTTAACATTACAGTAAAATCGAGATCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGATACTATGAGATGAATGTTAACATTACAGTAAAATCGAGATCCTG  100

seq1  CAGATAAAGATTCAGCCTTGTGGTATTTTAGCAACCACGTGAAATGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAGATTCAGCCTTGTGGTATTTTAGCAACCACGTGAAATGAATA  150

seq1  ACATCGGCACGCTACCATGTCGTTCAGTAGAATCATTCGGATACTAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGGCACGCTACCATGTCGTTCAGTAGAATCATTCGGATACTAAACT  200

seq1  AAGATTAGCGTAAATATAGTTTTAGCTTGTTAAGATTTCACATGGAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGCGTAAATATAGTTTTAGCTTGTTAAGATTTCACATGGAATGG  250

seq1  GCAAAATGACTTCTCTCATGTGATTCCAATTATAAACGAGGAAATAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGACTTCTCTCATGTGATTCCAATTATAAACGAGGAAATAAAGA  300

seq1  CAAGATTTAGGCACCATAGGGTGTAAAAGAAAAAAAGACAAAGTGTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAGGCACCATAGGGTGTAAAAGAAAAAAAGACAAAGTGTATCC  350

seq1  ACATAAAGTAGATTCAGTTTATGAGGGAAACTGTGAATTTCACTAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGTAGATTCAGTTTATGAGGGAAACTGTGAATTTCACTAAGTTT  400

seq1  TCCTGAAAACCTTACAGAATAATCCCTTGCTCTGTTGGGGACACATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAACCTTACAGAATAATCCCTTGCTCTGTTGGGGACACATTCCA  450

seq1  ATACCCCAGGGAGTTCTGGAAATTATCAGAAAATACAGAGCCCACAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCAGGGAGTTCTGGAAATTATCAGAAAATACAGAGCCCACAGTCC  500

seq1  GTGGTTTCCCTATGTGCTTATTACTATAAGATGCATTCAAAAGCTAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCCCTATGTGCTTATTACTATAAGATGCATTCAAAAGCTAGGCA  550

seq1  CAGCGAGAGACAACAGTAATGACTAATATAAAATGCTGAATAATTATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAGAGACAACAGTAATGACTAATATAAAATGCTGAATAATTATAAC  600

seq1  ATATGGAGAGTTACTTTATTATTCTTATGTTATTCCAAGTCCAGATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGAGTTACTTTATTATTCTTATGTTATTCCAAGTCCAGATTTTT  650

seq1  TGCCGTATGTTTTTAACCATGGCATACTTCAGGTAACTGCAGCTTTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTATGTTTTTAACCATGGCATACTTCAGGTAACTGCAGCTTTGGAG  700

seq1  AGAGTAACTAGGCAAACATGCACTGTTATGTTTATTGTAAACACCAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAACTAGGCAAACATGCACTGTTATGTTTATTGTAAACACCAGGTC  750

seq1  TAAGTTTTAATTTGCCTCAACATATATCATTAAATGCATTCACAAAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTAATTTGCCTCAACATATATCATTAAATGCATTCACAAAAGGA  800

seq1  TCACCATATCTAGACCGTAATGACAATTCCAGGATTGTTTTTCAATTGTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCACCATATCTAGACCGTAATGACAATTCCAGGATTGTTTTTCAATTG-T  849

seq1  TTAAAGCTGCAACATCAGCATTTATTTTGTTTAAAATTTCCAAAATTATC  900
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TTAAAGCTGCAACATCAGCATTTATTTTGTTT-AAATTTCTAAAATTATC  898

seq1  TAACATGCTAATAATTCAATTGAATTATGAATTATCTGCACTGTATGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCTAATAATTCAATTGAATTATGAATTATCTGCACTGTATGGTT  948

seq1  AAATTTTATTTGCCATCACAGAAAGATAAATTAGGCCTTTGCAATAGAAA  1000
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  AAATTTTATTTGCCATCACAGAAAGAT-AATTAGGCCTTTGC-ATAGAAA  996

seq1  TGTTGATAGAAGAAATAGAAATATTTCTAAAAGTATATTTCATCGCACCG  1050
      ||||||||||||||||||||||||||   ||||| |||||||||||| ||
seq2  TGTTGATAGAAGAAATAGAAATATTTTCTAAAGTTTATTTCATCGCA-CG  1045

seq1  TGAGATGGCCTAGTACTGTATCATGCCAGGGAGTAATTCTACCATCAAAT  1100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAGATGGCCTAGTACTGTATCATGCCAGGGAGTAATTCTACTATCAAAT  1095

seq1  GCACTGTCAACAAGGTGCAACTTGAAATAATTTCCATCTTGAAAAATAAG  1150
      |||||| ||||||||||| |||||||||| ||||||||||| ||||||||
seq2  GCACTG-CAACAAGGTGCCACTTGAAATATTTTCCATCTTG-AAAATAAG  1143

seq1  ATATCCATACTGGGAGGTTGGAGGGGA  1177
      |  |||||||||||| |||||||||||
seq2  AATTCCATACTGGGAAGTTGGAGGGGA  1170