BAC Information

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BAC

Clone NameB6Ng01-148L24
Chromosome10 (Build37)
Map Location 62,150,789 - 62,293,969
singlet/doubletdoublet
Overlap geneStox1, Ccar1, Cxxc6
Upstream geneSar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50
Downstream geneSlc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148L24.bB6Ng01-148L24.g
ACCDH945271DH945272
length1,0981,096
definitionDH945271|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L24, 5' end.DH945272|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,150,789 - 62,151,886)(62,292,884 - 62,293,969)
sequence
gaattctgccctaaagagccagcagtttcttgctgagaaaatgttacctg
tgagaatcatttgatccacaaaagcatgcatatgaagaggctcaaatcct
tgtgttctttttactagcactaaggaaacagcctgtattagtggggctat
gcatatccaaaaagccaccgagtatttgagagctgccactttacagagca
ccatgggtcatttggacgcagcaggggtagggttggcaggtgtgtccaaa
ggcatctgtgtcactggtccttgtcagtgccccacctccgaaagagtggc
attctcctgcacagtttaaagcacggagtggaatgggagagacgggtctg
tggtcaagggcactggctgtgcctctagaggccctgggttcagttcccag
cattcatggggtagtttataattgtgtttaaatccagggggtccagcact
cttttctggcctctatagacaccaggaatgccattattgtgtacaaacat
acacacaggcaaaatatgaatacatagaaaaaaatttcaattaaaaatac
aaagtacgggctggagtgatggctcgctggctttgtagtatagtggtggc
acacgcctttaatcttagcactggggagactgagataggcggatctctga
gtttgaagccagcctggtctacagagtgagttccaggacagccagggtta
cacacacaaaccctatctcaaaaaaccaaaaactcaaaaatcaaaaggca
aaaacaaaaagcaaaacaaaaaaacagacaaacaaaaaaccactctctgc
tcttccagggaacccgggttcaattcccagcacccacatggtagcttact
ggagtctgtaactccaagtccaggaggaaactcaaacactttacaaaaca
tatgtgcaggcaagatgtcagcgcacataaaatttaaaaataaaaacaca
agagtcatgctgagcttaaggcttgaaagcctttaatcctagcacttggt
aggcagaaggcaagcagatctctgattttgaaggccacccaggttctaca
tagttgagtcgagaatagttcaaacctatggtacctgtctcaaaaaaa
gaattctttcttcttccgcaatcagacatctctctagtccagttttattg
ctgctatggggtatgactgagtttggctgtagagtttgagctaactgaaa
tgtcaaagtcattaaatcaccttgcttaggctcatactcatgcctatatg
tgcctggctgtcttgaggctgtaccattgtgcatgtcccaagaaggtacc
tccttgagtgttaccatggcaacagaatgcagagcctatgatatctttct
aataacaacagccacccatcttaggagctgttgttctattgctgttgaga
gccactatgagcgtggcaagtcttataaaagaaaacatttagtggaggct
ggcttacagttttaaagacattatcatcttggactgttgctggaacagta
gctaagagttctacaccctggtctgtaggcagagagaaagagaaagagag
agactgactctggacttgctgtgggcttttcaaacctcaaagcttgtccc
ccaacaaggccacatctcctaatcctttcaaataatgcgacttccccgtt
gaccaagcattggaatctatgagcctgttggcagccattgtcattccaac
taccacaccattttagggattggtgactaaatcaaggcagagaatgcctg
agggcaggagttcctattaactaagaagatatgttgccagccccactttt
aatttaacaagatagactaaacagtgttaagtatgctgatatgttttaaa
agccattaatttattacaatgatgatgcttgtgtcccagtgcacacacgt
gggtgtgcgcacacaacaggagcctatggaggcattggcttgggtacttc
ccaacacctccttgagacaggagacctcattggcccaagagcttgccaat
ggtctccagatgcatttgcttttctccacttgcaatgttgggattacagg
tgtgatgtctcctcctggtgttttacatgggttctggggagttgaactca
gatcttcaaacatttctgcagaagatatcctagtcttttttatggcagaa
aatatatattttaccttttttccaatggaattaaaataaaaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_62150789_62151886
seq2: B6Ng01-148L24.b_42_1139

seq1  GAATTCTGCCCTAAAGAGCCAGCAGTTTCTTGCTGAGAAAATGTTACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTAAAGAGCCAGCAGTTTCTTGCTGAGAAAATGTTACCTG  50

seq1  TGAGAATCATTTGATCCACAAAAGCATGCATATGAAGAGGCTCAAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCATTTGATCCACAAAAGCATGCATATGAAGAGGCTCAAATCCT  100

seq1  TGTGTTCTTTTTACTAGCACTAAGGAAACAGCCTGTATTAGTGGGGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTTTACTAGCACTAAGGAAACAGCCTGTATTAGTGGGGCTAT  150

seq1  GCATATCCAAAAAGCCACCGAGTATTTGAGAGCTGCCACTTTACAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCCAAAAAGCCACCGAGTATTTGAGAGCTGCCACTTTACAGAGCA  200

seq1  CCATGGGTCATTTGGACGCAGCAGGGGTAGGGTTGGCAGGTGTGTCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTCATTTGGACGCAGCAGGGGTAGGGTTGGCAGGTGTGTCCAAA  250

seq1  GGCATCTGTGTCACTGGTCCTTGTCAGTGCCCCACCTCCGAAAGAGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGTGTCACTGGTCCTTGTCAGTGCCCCACCTCCGAAAGAGTGGC  300

seq1  ATTCTCCTGCACAGTTTAAAGCACGGAGTGGAATGGGAGAGACGGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTGCACAGTTTAAAGCACGGAGTGGAATGGGAGAGACGGGTCTG  350

seq1  TGGTCAAGGGCACTGGCTGTGCCTCTAGAGGCCCTGGGTTCAGTTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGGGCACTGGCTGTGCCTCTAGAGGCCCTGGGTTCAGTTCCCAG  400

seq1  CATTCATGGGGTAGTTTATAATTGTGTTTAAATCCAGGGGGTCCAGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGGGGTAGTTTATAATTGTGTTTAAATCCAGGGGGTCCAGCACT  450

seq1  CTTTTCTGGCCTCTATAGACACCAGGAATGCCATTATTGTGTACAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGCCTCTATAGACACCAGGAATGCCATTATTGTGTACAAACAT  500

seq1  ACACACAGGCAAAATATGAATACATAGAAAAAAATTTCAATTAAAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGGCAAAATATGAATACATAGAAAAAAATTTCAATTAAAAATAC  550

seq1  AAAGTACGGGCTGGAGTGATGGCTCGCTGGCTTTGTAGTATAGTGGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACGGGCTGGAGTGATGGCTCGCTGGCTTTGTAGTATAGTGGTGGC  600

seq1  ACACGCCTTTAATCTTAGCACTGGGGAGACTGAGATAGGCGGATCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCCTTTAATCTTAGCACTGGGGAGACTGAGATAGGCGGATCTCTGA  650

seq1  GTTTGAAGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGTTA  700

seq1  CACACACAAACCCTATCTCAAAAAACCAAAAACTCAAAAATCAAAAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAACCCTATCTCAAAAAACCAAAAACTCAAAAATCAAAAGGCA  750

seq1  AAAACAAAAAGCAAAACAAAAAAACAGACAAACAAAAAACCACTCTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAGCAAAACAAAAAAACAGACAAACAAAAAACCACTCTCTGC  800

seq1  TCTTCCAGGGAACCCGGGTTCAATTCCCAGCACCCACATGGTAGCTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGGGAACCCGGGTTCAATTCCCAGCACCCACATGGTAGCTTACT  850

seq1  GGAGTCTGTAACTCCAAGTCCAGGAGGAAACTCAAACACTTTACAAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGTAACTCCAAGTCCAGGAGGAAACTCAAACACTTTACAAAACA  900

seq1  TATGTGCAGGCAAGATGTCAGCGCACATAAAATTTAAAAATAAAAAACAC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATGTGCAGGCAAGATGTCAGCGCACATAAAATTTAAAAAT-AAAAACAC  949

seq1  AAGAGTCATGCTGAGCTTAAGGCTTTGAAAGCCTTTAATCCTAGCACTTG  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGAGTCATGCTGAGCTTAAGGC-TTGAAAGCCTTTAATCCTAGCACTTG  998

seq1  GTAGGCAG-AGGCAAGCAGATCTCTGATTTTG-AGGCCACCCAGG-TCTA  1047
      |||||||| ||||||||||||||||||||||| |||||||||||| ||||
seq2  GTAGGCAGAAGGCAAGCAGATCTCTGATTTTGAAGGCCACCCAGGTTCTA  1048

seq1  CATAG-TGAGTTCGAGAATAG-TCAAACCTATGGTAACCCTGTCTCAAAA  1095
      ||||| |||| |||||||||| ||||||||||||||  ||||||||||||
seq2  CATAGTTGAG-TCGAGAATAGTTCAAACCTATGGTA--CCTGTCTCAAAA  1095

seq1  AAA  1098
      |||
seq2  AAA  1098

seq1: chr10_62292884_62293969
seq2: B6Ng01-148L24.g_70_1165 (reverse)

seq1  GAAA-TTTTATTTTAATTCAATTGGAAAAAA-GTAAA--ATATAATTTCT  46
      |||| |||||||||||||| ||||||||||| |||||  ||||| |||||
seq2  GAAATTTTTATTTTAATTCCATTGGAAAAAAGGTAAAATATATATTTTCT  50

seq1  GCCATTAGATAGACTAGGATATCTTCTGCAGAAATGTTTGAGGATCTGAG  96
      ||||| | | ||||||||||||||||||||||||||||||| ||||||||
seq2  GCCATAAAAAAGACTAGGATATCTTCTGCAGAAATGTTTGAAGATCTGAG  100

seq1  TTCAACTCCCCAGAACCCATGTAAAACACCAGGA-GAGACATCACACCTG  145
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCAACTCCCCAGAACCCATGTAAAACACCAGGAGGAGACATCACACCTG  150

seq1  TAATCCCAACATTGCAAGTGGAG-AAAGC-AATGCATCTGGAGACCATTG  193
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  TAATCCCAACATTGCAAGTGGAGAAAAGCAAATGCATCTGGAGACCATTG  200

seq1  GCAAGCTCTT-GGCCAATGAGGTCTCCTGTCTCAAGGAGGTGTT-GGAAG  241
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  GCAAGCTCTTGGGCCAATGAGGTCTCCTGTCTCAAGGAGGTGTTGGGAAG  250

seq1  TACCCAAGCCAATGCCTCCATAGGCTCCTGTTGTGTGCGCACACCCACGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGCCAATGCCTCCATAGGCTCCTGTTGTGTGCGCACACCCACGT  300

seq1  GTGTGCACTGGGACACAAGCATCATCATTGTAATAAATTAATGGCTTTTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACTGGGACACAAGCATCATCATTGTAATAAATTAATGGCTTTTA  350

seq1  AAACATATCAGCATACTTAACACTG-TTAGTCTATCTTGTTAAATTAAAA  390
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAACATATCAGCATACTTAACACTGTTTAGTCTATCTTGTTAAATTAAAA  400

seq1  GTGGGGCTGGCAACATATCTTCTTAGTTAATAGGAACTCCTGCCCTCAGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGGCAACATATCTTCTTAGTTAATAGGAACTCCTGCCCTCAGG  450

seq1  CATTCTCTGCCTTGATTTAGTCACCAATCCCTAAAATGGTGTGGTAGTTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTGCCTTGATTTAGTCACCAATCCCTAAAATGGTGTGGTAGTTG  500

seq1  GAATGACAATGGCTGCCAACAGGCTCATAGATTCCAATGCTTGGTCAACG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACAATGGCTGCCAACAGGCTCATAGATTCCAATGCTTGGTCAACG  550

seq1  GGGAAGTCGCATTATTTGAAAGGATTAGGAGATGTGGCCTTGTTGGGGGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTCGCATTATTTGAAAGGATTAGGAGATGTGGCCTTGTTGGGGGA  600

seq1  CAAGCTTTGAGGTTTGAAAAGCCCACAGCAAGTCCAGAGTCAGTCTCTCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTGAGGTTTGAAAAGCCCACAGCAAGTCCAGAGTCAGTCTCTCT  650

seq1  CTTTCTCTTTCTCTCTGCCTACAGACCAGGGTGTAGAACTCTTAGCTACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTTCTCTCTGCCTACAGACCAGGGTGTAGAACTCTTAGCTACT  700

seq1  GTTCCAGCAACAGTCCAAGATGATAATGTCTTTAAAACTGTAAGCCAGCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCAACAGTCCAAGATGATAATGTCTTTAAAACTGTAAGCCAGCC  750

seq1  TCCACTAAATGTTTTCTTTTATAAGACTTGCCACGCTCATAGTGGCTCTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAAATGTTTTCTTTTATAAGACTTGCCACGCTCATAGTGGCTCTC  800

seq1  AACAGCAATAGAACAACAGCTCCTAAGATGGGTGGCTGTTGTTATTAGAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAATAGAACAACAGCTCCTAAGATGGGTGGCTGTTGTTATTAGAA  850

seq1  AGATATCATAGGCTCTGCATTCTGTTGCCATGGTAACACTCAAGGAGGTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCATAGGCTCTGCATTCTGTTGCCATGGTAACACTCAAGGAGGTA  900

seq1  CCTTCTTGGGACATGCACAATGGTACAGCCTCAAGACAGCCAGGCACATA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGGGACATGCACAATGGTACAGCCTCAAGACAGCCAGGCACATA  950

seq1  TAGGCATGAGTATGAGCCTAAGCAAGGTGATTTAATGACTTTGACATTTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGAGTATGAGCCTAAGCAAGGTGATTTAATGACTTTGACATTTC  1000

seq1  AGTTAGCTCAAACTCTACAGCCAAACTCAGTCATACCCCATAGCAGCAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCTCAAACTCTACAGCCAAACTCAGTCATACCCCATAGCAGCAAT  1050

seq1  AAAACTGGACTAGAGAGATGTCTGATTGCGGAAGAAGAAAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGACTAGAGAGATGTCTGATTGCGGAAGAAGAAAGAATTC  1096