BAC Information

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BAC

Clone NameB6Ng01-148P06
Chromosome10 (Build37)
Map Location 44,189,246 - 44,275,302
singlet/doubletdoublet
Overlap genenone
Upstream geneAK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1
Downstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148P06.bB6Ng01-148P06.g
ACCDH945423DH945424
length1,1451,018
definitionDH945423|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P06, 5' end.DH945424|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,189,246 - 44,190,399)(44,274,274 - 44,275,302)
sequence
gaattctctaagaaactgaacttgagcctcatgttcaggatttaaacaat
tctgaattcggaagtcacatctaaatacccaagggttgtcctgcacatag
agcatgggacatgcagcagggggaggaggcgtctctccccagctggtcat
ggggaccaagttgtaagtgattctagttgcccaaattaactatgaagcat
aagcctgtctactttcaaacaaacttaaaaacagtaagtagctggtttgt
agcagttgttgtttcagtttgtgtctgagatagggtctcactaagtagca
aaagttgaatgcatgggtatcttcttgtctcagagacctcccctggactg
agattacaggtgtgagccatgagactagctaaaagtaactgagaacttat
aaaatatttgccggatattttctgagtaaaacataaatgaaaaaaaaaac
agtaagtactatgtataatgaatatacaaaaaataataatttcttttttc
tgagacatggtttatctgtgtagtcctggctgtccttaagccgcctctgc
tttcaatttaaaataaattgttccttaatattatttagccaaccagaggc
ttaatcacttttttagagaatttctaaattgaagaagcaataaatctctg
gggatggagagatggcaccgtggtgtagtatactagctgctcttacagca
gagttgggttcctagaacccacactgtggcttacaagtatcatcaactcc
agtttccaggctattcattgtcctggactggcctctctggtaccagacat
gcatgtagtgtgcagacatatgtacaggcaagattccatacacattaaat
aaatatatttaaaaaaaaaacttaaagttaataataaggctccttaacac
tactgtaatgttgagaaaatagcttagacctctttaccttggggttcaga
ccatcaatgtaccttgccacacattccttcatctctggagttgagccctc
tgccaagcccggagctcagctgcctcgtgttgaggcaacagccagttctc
atctctgctacttcactacttccccttcttgggagtcagatctggacaca
gcacaggcgtgcttcaggaagcttcaggctgctggcatgagcttc
gaattccactccttagacgtcaatatgtgacactgtggtggtttgaaaga
aatggcccgcataggctcctagggagtagcacacaattaggaggtgtggc
ttgttagagtagttgtagctttttttggaagaagtgtgtcacaagggatg
agttttgagggctcagatattcaagccaggtccagggtttcactctcttc
ctgccgcatgccgattcaagtgtagtactctcagctttctctccagtacc
acatctgcctgtgtgccatcatgcttcctaccatgatctcaatggagaaa
acctcagaactgtaagccagccttaattaaatgttgtcttttataagagt
tgccatggtcatagcgtctcttcacagaaatggaaaccctaagacagtca
gtcaccctcactcatacctcttttggcttaactactcagcctttcattgt
gtaggtactggccttgaaaaaaaaaaaaacttttgacaatatgtaaatgc
ttatctacaagaggcaatatacatttccttataggtatattgcaaattaa
ttgaaataagtaatactaaattaacataattaaataataagctcattagc
attaaataatttattattaaaattaaatacaaagtaataataaaaaaatg
gtactaaagcatgagataacttgactaggaattcattattagtttgacaa
tatagtgagtttgctctctctcactaaaaatcctcttcattattaattta
gaagaaagaaatatagccaggtggtggtggtgtataccttttaatctcgg
gtcttgggaggcagaatcagccagatctctgagttcaaggctagcctggt
ctacagagcaagttccatgacagtcaggaatatatagagaaaccctctct
taaacttaaagacaaaaataaacaacaacgacaacaatcctcaaaaacaa
aacaaacaaacaacacaaaaacctaacacacaactaaaccaaagggaagg
aggaagggagggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_44189246_44190399
seq2: B6Ng01-148P06.b_45_1189

seq1  GAATTCTCTAAGAAACTGAACTTGAGCCTCATGTTCAGGATTTAAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGAAACTGAACTTGAGCCTCATGTTCAGGATTTAAACAAT  50

seq1  TCTGAATTCGGAAGTCACATCTAAATACCCAAGGGTTGTCCTGCACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTCGGAAGTCACATCTAAATACCCAAGGGTTGTCCTGCACATAG  100

seq1  AGCATGGGACATGCAGCAGGGGGAGGAGGCGTCTCTCCCCAGCTGGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGACATGCAGCAGGGGGAGGAGGCGTCTCTCCCCAGCTGGTCAT  150

seq1  GGGGACCAAGTTGTAAGTGATTCTAGTTGCCCAAATTAACTATGAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCAAGTTGTAAGTGATTCTAGTTGCCCAAATTAACTATGAAGCAT  200

seq1  AAGCCTGTCTACTTTCAAACAAACTTAAAAACAGTAAGTAGCTGGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCTACTTTCAAACAAACTTAAAAACAGTAAGTAGCTGGTTTGT  250

seq1  AGCAGTTGTTGTTTCAGTTTGTGTCTGAGATAGGGTCTCACTAAGTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGTTGTTTCAGTTTGTGTCTGAGATAGGGTCTCACTAAGTAGCA  300

seq1  AAAGTTGAATGCATGGGTATCTTCTTGTCTCAGAGACCTCCCCTGGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAATGCATGGGTATCTTCTTGTCTCAGAGACCTCCCCTGGACTG  350

seq1  AGATTACAGGTGTGAGCCATGAGACTAGCTAAAAGTAACTGAGAACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACAGGTGTGAGCCATGAGACTAGCTAAAAGTAACTGAGAACTTAT  400

seq1  AAAATATTTGCCGGATATTTTCTGAGTAAAACATAAATGAAAAAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTGCCGGATATTTTCTGAGTAAAACATAAATGAAAAAAAAAAC  450

seq1  AGTAAGTACTATGTATAATGAATATACAAAAAATAATAATTTCTTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTACTATGTATAATGAATATACAAAAAATAATAATTTCTTTTTTC  500

seq1  TGAGACATGGTTTATCTGTGTAGTCCTGGCTGTCCTTAAGCCGCCTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATGGTTTATCTGTGTAGTCCTGGCTGTCCTTAAGCCGCCTCTGC  550

seq1  TTTCAATTTAAAATAAATTGTTCCTTAATATTATTTAGCCAACCAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTAAAATAAATTGTTCCTTAATATTATTTAGCCAACCAGAGGC  600

seq1  TTAATCACTTTTTTAGAGAATTTCTAAATTGAAGAAGCAATAAATCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCACTTTTTTAGAGAATTTCTAAATTGAAGAAGCAATAAATCTCTG  650

seq1  GGGATGGAGAGATGGCACCGTGGTGTAGTATACTAGCTGCTCTTACAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGAGAGATGGCACCGTGGTGTAGTATACTAGCTGCTCTTACAGCA  700

seq1  GAGTTGGGTTCCTAGAACCCACACTGTGGCTTACAAGTATCATCAACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGTTCCTAGAACCCACACTGTGGCTTACAAGTATCATCAACTCC  750

seq1  AGTTTCCAGGCTATTCATTGTCCTGGACTGGCCTCTCTGGTACCAGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCAGGCTATTCATTGTCCTGGACTGGCCTCTCTGGTACCAGACAT  800

seq1  GCATGTAGTGTGCAGACATATGTACAGGCAAGATTTCCATACACATTAAA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCATGTAGTGTGCAGACATATGTACAGGCAAGA-TTCCATACACATTAAA  849

seq1  TAAATATATTTAAAAAAAAAACTTAAAGTTAATAAATAAGGCTCCTTAAC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAATATATTTAAAAAAAAAACTTAAAGTTAAT-AATAAGGCTCCTTAAC  898

seq1  ACTACTGTAATGTTGAG-AAATAGCTTAGACCTC-TTACCTTGGGGTTCA  948
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  ACTACTGTAATGTTGAGAAAATAGCTTAGACCTCTTTACCTTGGGGTTCA  948

seq1  GACCATCAATGTACCTTGCCACACATTCCTCCATCTCCTGGAGTTGAGCC  998
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GACCATCAATGTACCTTGCCACACATTCCTTCATCT-CTGGAGTTGAGCC  997

seq1  CTCTGCCAAGCCCGGAGCTCAGCTGCCTCGTGTTGGAGGCAACAGCCAGT  1048
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTGCCAAGCCCGGAGCTCAGCTGCCTCGTGTT-GAGGCAACAGCCAGT  1046

seq1  TCTCATCTCCTTGCTAACTTCACTACTTCCCCTTCTTGGGAGTCAGATCT  1098
      |||||||||  |||| ||||||||||||||||||||||||||||||||||
seq2  TCTCATCTC--TGCT-ACTTCACTACTTCCCCTTCTTGGGAGTCAGATCT  1093

seq1  GGACACAGCACAGGCCGTGGCTTCCAGGAAGCTTCAAGCCTGCTGGCATG  1148
      |||||||||||||| ||| |||| ||||||||||| || |||||||||||
seq2  GGACACAGCACAGG-CGT-GCTT-CAGGAAGCTTC-AGGCTGCTGGCATG  1139

seq1  AGCTTC  1154
      ||||||
seq2  AGCTTC  1145

seq1: chr10_44274274_44275302
seq2: B6Ng01-148P06.g_67_1084 (reverse)

seq1  CTCCCTCCCTCCCTTCCTCCTTCCCTTTGGTTTTAGTTGTTGTTGTTAGG  50
      |||||||||||||||||||||||||||||| |||||||||   |||||||
seq2  CTCCCTCCCTCCCTTCCTCCTTCCCTTTGG-TTTAGTTGT--GTGTTAGG  47

seq1  TTTTTTGTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGAGGATTTGTTGTC  100
      |||    |||| ||||||   ||||||||| |||||||||| ||||||||
seq2  TTT----TTGTGTTGTTT--GTTTGTTTTG-TTTTTGAGGA-TTGTTGTC  89

seq1  GTTGTTGTTTATTTTTGTCTTTTAAGTTTAAGAGAGGGTTTCTCTATATA  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTATTTTTGTC-TTTAAGTTTAAGAGAGGGTTTCTCTATATA  138

seq1  TTCCTGACTGTCATGGAACTTGCTCTGTAGACCAGGCTAGCCTTGAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACTGTCATGGAACTTGCTCTGTAGACCAGGCTAGCCTTGAACTC  188

seq1  AGAGATCTGGCTGATTCTGCCTCCCAAGACCCGAGATT-AAAGGTATACA  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAGATCTGGCTGATTCTGCCTCCCAAGACCCGAGATTAAAAGGTATACA  238

seq1  CCACCACCACCTGGCTATATTTCTTTCTTCTAAATTAATAATGAAGAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACCTGGCTATATTTCTTTCTTCTAAATTAATAATGAAGAGGA  288

seq1  TTTTTAGTGAGAGAGAGCAAACTCACTATATTGTCAAACTAATAATGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTGAGAGAGAGCAAACTCACTATATTGTCAAACTAATAATGAAT  338

seq1  TCCTAGTCAAGTTATCTCATGCTTTAGTACCATTTTTTTATTATTACTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCAAGTTATCTCATGCTTTAGTACCATTTTTTTATTATTACTTT  388

seq1  GTATTTAATTTTAATAATAAATTATTTAATGCTAATGAGCTTATTATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAATTTTAATAATAAATTATTTAATGCTAATGAGCTTATTATTTA  438

seq1  ATTATGTTAATTTAGTATTACTTATTTCAATTAATTTGCAATATACCTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTAATTTAGTATTACTTATTTCAATTAATTTGCAATATACCTAT  488

seq1  AAGGAAATGTATATTGCCTCTTGTAGATAAGCATTTACATATTGTCAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATGTATATTGCCTCTTGTAGATAAGCATTTACATATTGTCAAAA  538

seq1  GTTTTTTTTTTTTTCAAGGCCAGTACCTACACAATGAAAGGCTGAGTAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTCAAGGCCAGTACCTACACAATGAAAGGCTGAGTAGT  588

seq1  TAAGCCAAAAGAGGTATGAGTGAGGGTGACTGACTGTCTTAGGGTTTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAAAAGAGGTATGAGTGAGGGTGACTGACTGTCTTAGGGTTTCCA  638

seq1  TTTCTGTGAAGAGACGCTATGACCATGGCAACTCTTATAAAAGACAACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGAAGAGACGCTATGACCATGGCAACTCTTATAAAAGACAACAT  688

seq1  TTAATTAAGGCTGGCTTACAGTTCTGAGGTTTTCTCCATTGAGATCATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAGGCTGGCTTACAGTTCTGAGGTTTTCTCCATTGAGATCATGG  738

seq1  TAGGAAGCATGATGGCACACAGGCAGATGTGGTACTGGAGAGAAAGCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGCATGATGGCACACAGGCAGATGTGGTACTGGAGAGAAAGCTGA  788

seq1  GAGTACTACACTTGAATCGGCATGCGGCAGGAAGAGAGTGAAACCCTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTACACTTGAATCGGCATGCGGCAGGAAGAGAGTGAAACCCTGGA  838

seq1  CCTGGCTTGAATATCTGAGCCCTCAAAACTCATCCCTTGTGACACACTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTGAATATCTGAGCCCTCAAAACTCATCCCTTGTGACACACTTC  888

seq1  TTCCAAAAAAAGCTACAACTACTCTAACAAGCCACACCTCCTAATTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAAAAGCTACAACTACTCTAACAAGCCACACCTCCTAATTGTGT  938

seq1  GCTACTCCCTAGGAGCCTATGCGGGCCATTTCTTTCAAACCACCACAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCCCTAGGAGCCTATGCGGGCCATTTCTTTCAAACCACCACAGTG  988

seq1  TCACATATTGACGTCTAAGGAGTGGAATTC  1029
      ||||||||||||||||||||||||||||||
seq2  TCACATATTGACGTCTAAGGAGTGGAATTC  1018