BAC Information

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BAC

Clone NameB6Ng01-149F05
Chromosome3 (Build37)10 (Build37)
Map Location 67,454,694 - 67,455,911104,054,133 - 104,054,693
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG208426, EG545531, LOC631379, Schip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149F05.bB6Ng01-149F05.g
ACCDH945693DH945694
length1,201863
definitionDH945693|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F05, 5' end.DH945694|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,454,694 - 67,455,911)(104,054,133 - 104,054,693)
sequence
gaattccaatggctcaagctctaagatcaagaattgaaaaatgggacctc
atgaaactgaaaagctcctgaagtaaggcaaaggacagagtcaataagac
aaatcagcaacctacaggttgggaaaaaatcttcactaatcccacatccg
agagaaggctaatatccaaaatgtgtaaagaactgaagaagttaacctct
aaaaaaaaaacaaaaacaaaaaaaacaaaaacaaaaacaatccaataaaa
aaagtgaggtatagaactaaacagagaactcacaacagaggaatcttgaa
tggctgggaagcacctaaagaaatgttcagtccttagtcatcagggaaat
gcaaatcaaaatgaccctgagatttcacctcacaccagtcaaaaactcag
gtgacagcagatgctggtgagaatgtggagaaagaggaacactcctccat
tgctggtgggtttgcctcctttctaaaacacattgtgtaaccaggacccc
atcccccaacgcagcagtaggatattgctcagcacccaaacatcccatac
tttaaatgtctcttactagtaccagtactttgagatctggcttgggcagg
caataggaaatatttgctgaaccaatagaccaaaccaagtagtctgtgga
ttgatggagagagctgattggctggttggttgtgaagctactgctcgtca
ggaatagtgggcttggaggaaggcagccttccagcttcctttgttactat
ctggtcacctgttttggctgctattcctatgattacttctgagaagacag
gtcatgccacacagcaccatgcaacaaagctgaaaatgttttctgaggag
ccagaggagcaaatgcacgcattattacagatgagctgaggacagtcgca
gacgcttttggaagggcctaccttctcccctcccttctcctcttgataac
tctccttttggggccatccttgagtggtttcctgtagctgggctttctta
ttcctgtatctcttttccgagtcaagtctcttggtgtagccgagctgatc
tcacaactcaagaaatctttgaggtctagcgtctggagtctaggattaca
ggaatagcaccatgccgctcctccagacttgtgcaagaacggctaccaaa
accgaatgtggggcgtgggtgatctcagtgtcctccatgccaactctgct
c
gaattcagtagttgttcagcctgtaaagctgatgtctcagctgcaattca
gtattccaaagaatgttctaatgccaggtaagaaatggacttaataacct
aatagtgggagtgagggcaaacaggcaaagagagagcaagcttccttctc
ccatgccttttatagaaactgcaagcaaaaggtatggcccagattaaagg
tggatcttcctaccttaaaagaactggattaagggtttatcttccacctc
agagatccattcagattagaagtatatcttcagacaattgaagtttttat
aaaaccagagacactgaaacttatagaggagaaagtagggaaaagcctcg
aagatatgggtagaggggaaaaattcctgaatagaacagcatggcttgtg
ctgtaagatagagaatcgacaaatgggacctcataaaattgcaaagcttc
tgcaaggcaaaagacaccatcaataagacaaaaaaggccaccaacagatt
gggaaaggatctttacctatcctaaatcagataggggactaatatccaat
atatataaagaaactcaagaaggtgaactccagaaaatcaaataacccca
ttaaaaaatggggctcagagctaaacaaagaattcttacctgaggaatgc
ctaaatggctgagaagcacctgaaaaaatgttcaacatccttaatcatca
gagaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcaga
atggctaagatcaaaaattcaggtgacagcagatgcttggtgaggatgtg
gagaaagaggaccactttctcctttgttggggggattgcaagcttgtaca
accactctggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_67454694_67455911
seq2: B6Ng01-149F05.b_49_1249

seq1  GAATTCCAATGGCTCAAGCTCTAAGATCAAGAATTGAAAAATGGGACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGGCTCAAGCTCTAAGATCAAGAATTGAAAAATGGGACCTC  50

seq1  ATGAAACTGAAAAGCTCCTGAAGTAAGGCAAAGGACAGAGTCAATAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTGAAAAGCTCCTGAAGTAAGGCAAAGGACAGAGTCAATAAGAC  100

seq1  AAATCAGCAACCTACAGGTTGGGAAAAAATCTTCACTAATCCCACATCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCAACCTACAGGTTGGGAAAAAATCTTCACTAATCCCACATCCG  150

seq1  AGAGAAGGCTAATATCCAAAATGTGTAAAGAACTGAAGAAGTTAACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGCTAATATCCAAAATGTGTAAAGAACTGAAGAAGTTAACCTCT  200

seq1  AAAAAAAAAACAAAAACAAAAAAAACAAAAACAAAAACAATCCAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAAAAACAAAAAAAACAAAAACAAAAACAATCCAATAAAA  250

seq1  AAAGTGAGGTATAGAACTAAACAGAGAACTCACAACAGAGGAATCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGGTATAGAACTAAACAGAGAACTCACAACAGAGGAATCTTGAA  300

seq1  TGGCTGGGAAGCACCTAAAGAAATGTTCAGTCCTTAGTCATCAGGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGAAGCACCTAAAGAAATGTTCAGTCCTTAGTCATCAGGGAAAT  350

seq1  GCAAATCAAAATGACCCTGAGATTTCACCTCACACCAGTCAAAAACTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAAAATGACCCTGAGATTTCACCTCACACCAGTCAAAAACTCAG  400

seq1  GTGACAGCAGATGCTGGTGAGAATGTGGAGAAAGAGGAACACTCCTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCAGATGCTGGTGAGAATGTGGAGAAAGAGGAACACTCCTCCAT  450

seq1  TGCTGGTGGGTTTGCCTCCTTTCTAAAACACATTGTGTAACCAGGACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGGGTTTGCCTCCTTTCTAAAACACATTGTGTAACCAGGACCCC  500

seq1  ATCCCCCAACGCAGCAGTAGGATATTGCTCAGCACCCAAACATCCCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCAACGCAGCAGTAGGATATTGCTCAGCACCCAAACATCCCATAC  550

seq1  TTTAAATGTCTCTTACTAGTACCAGTACTTTGAGATCTGGCTTGGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTCTCTTACTAGTACCAGTACTTTGAGATCTGGCTTGGGCAGG  600

seq1  CAATAGGAAATATTTGCTGAACCAATAGACCAAACCAAGTAGTCTGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGAAATATTTGCTGAACCAATAGACCAAACCAAGTAGTCTGTGGA  650

seq1  TTGATGGAGAGAGCTGATTGGCTGGTTGGTTGTGAAGCTACTGCTCGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAGAGAGCTGATTGGCTGGTTGGTTGTGAAGCTACTGCTCGTCA  700

seq1  GGAATAGTGGGCTTGGAGGAAGGCAGCCTTCCAGCTTCCTTTGTTACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTGGGCTTGGAGGAAGGCAGCCTTCCAGCTTCCTTTGTTACTAT  750

seq1  CTGGTCACCTGTTTTGGCTGCTATTCCTATGATTACTTCTGAGAAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACCTGTTTTGGCTGCTATTCCTATGATTACTTCTGAGAAGACAG  800

seq1  GTCATGCCACACAGCACCATGCAACAAAGCTGATAATGTTTTCTGAGGAG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCATGCCACACAGCACCATGCAACAAAGCTGAAAATGTTTTCTGAGGAG  850

seq1  CCAGAGGAGCAAATGCACGCATTA-TACAGATGAGCTGAGGACAGTCGCA  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAGAGGAGCAAATGCACGCATTATTACAGATGAGCTGAGGACAGTCGCA  900

seq1  GACGCTTTTGGAAGGCCCTACCTTCTCCCCCTCCCCTCCTCCTCTTGATA  949
      ||||||||||||||| ||||||||||||||   |||| ||||||||||||
seq2  GACGCTTTTGGAAGGGCCTACCTTCTCCCC--TCCCTTCTCCTCTTGATA  948

seq1  ACTCTCCTTTTGGGGCCATCCTTTGGGTGGTTTCATGTTGCTGTGCTTTC  999
      ||||||||||||||||||||| ||| |||||||| ||| |||| ||||||
seq2  ACTCTCCTTTTGGGGCCATCC-TTGAGTGGTTTCCTGTAGCTGGGCTTTC  997

seq1  TT-TTCCTGTTTCTCTTTTTCCCGAGTCAAGGTCTCTTTGTGTAGCCCGA  1048
      || ||||||| ||||||||  ||||||||| ||||||| |||||| ||||
seq2  TTATTCCTGTATCTCTTTT--CCGAGTCAA-GTCTCTTGGTGTAG-CCGA  1043

seq1  GCTGATCTCAC-ACTCAAAGAAATCTTTGAGTCTTAGCCTTCTGAGTTCT  1097
      ||||||||||| |||| ||||||||||||||   ||| | ||||   |||
seq2  GCTGATCTCACAACTC-AAGAAATCTTTGAGGTCTAG-CGTCTGGAGTCT  1091

seq1  AGGATTACAGGGATGAGGCACCCATGCCCGCTTCTCTCAGTACTGTGGCA  1147
      ||||||||||| ||   ||| ||||| ||||| ||| ||| |||   |||
seq2  AGGATTACAGGAAT--AGCA-CCATG-CCGCTCCTC-CAG-ACTTGTGCA  1135

seq1  TAGGACTGCTACACAAACACCGATGTGTGGGGC-TGTGTGCATCTCAGGT  1196
       || || ||||| |||| |||||  |||||||| || ||| |||||| ||
seq2  -AGAACGGCTAC-CAAA-ACCGA-ATGTGGGGCGTGGGTG-ATCTCA-GT  1179

seq1  GCTCTCACTGCCAACTCTGCTC  1218
      |  |||  ||||||||||||||
seq2  GTCCTCCATGCCAACTCTGCTC  1201

seq1: chr10_104054133_104054693
seq2: B6Ng01-149F05.g_366_930 (reverse)

seq1  TTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAG-GAGT  49
      |||||||||||||||||||||| ||||||||| ||||||| ||||  |||
seq2  TTTCCAGAGTGGTTGTACAAGCTTGCAATCCCCCCAACAAAGGAGAAAGT  50

seq1  GTTCCTCTTTCTCCACATCCTCGCC-AGCATCTGCTGTCACCTGAATTTT  98
      | |||||||||||||||||||| || ||||||||||||||||||||||||
seq2  GGTCCTCTTTCTCCACATCCTCACCAAGCATCTGCTGTCACCTGAATTTT  100

seq1  TGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTG  150

seq1  ATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTT  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTCTCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTT  200

seq1  CTCTGCCA-TTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAG  247
      ||| |||| || || ||||||||||| ||||||||||||| || ||||||
seq2  CTCAGCCATTTAGGCATTCCTCAGGTAAGAATTCTTTGTTTAGCTCTGAG  250

seq1  CCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAG  297
      |||||||||||||| |||||||||||||||||| ||| ||||||||||||
seq2  CCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTTCACCTTCTTGAG  300

seq1  -TTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAGGTA  346
       |||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTA  350

seq1  AAGATCCTTTCTCAATCTGTTGGTGGTC-TTTTTGTCTTATTGACGGTGT  395
      ||||||||||| |||||||||||||| | ||||||||||||||| |||||
seq2  AAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTTGTCTTATTGATGGTGT  400

seq1  CTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAACT  445
      ||||||||||||||||||||||||||||||||||||||||||| || | |
seq2  CTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATT  450

seq1  CTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCC  495
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTATCTTACAGCACAAGCCA-TGCTGTTCTATTCAGGAATTTTTCCCC  499

seq1  TGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTTCA  545
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCA  549

seq1  GTGTCTCTGGTTTTAT  561
      ||||||||||||||||
seq2  GTGTCTCTGGTTTTAT  565