BAC Information

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BAC

Clone NameB6Ng01-150I14
Chromosome10 (Build37)1 (Build37)
Map Location 5,046,293 - 5,047,44345,855,503 - 45,855,732
singlet/doubletsingletsinglet
Overlap geneSyne1
Upstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150I14.bB6Ng01-150I14.g
ACCDH946591DH946592
length1,155444
definitionDH946591|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I14, 5' end.DH946592|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,046,293 - 5,047,443)(45,855,503 - 45,855,732)
sequence
gaattcacaccacagtctttctccgcttccacccagtcctctctatagtc
gaatgtgccagtcctctcgtctttaagaaaaaaattgcaaactcccagca
gaattcatgtcatgactaaaaatcacccaaaagtgtatgtggcacttcct
tcatccaggaccccagcagagatcaagagccatgagcacccaattatatg
aattgggtattactttatctaacccggtcatatccttccctagtggactg
gctcttaattacagtaagcagatgttacagaagtagctgttgtgccgttg
atcagagagtagaaagatggagaaaagtctgtgtgtgttcagtacggaca
cgatcatttaaaatacagattcagtacattgttgctggaatctgcagacg
tgaaacccaaggataaggtgacacagccactgtacttgtttggcagcccc
gtttgataactactgagacagggcccctggcaggctttggttctgctttt
ggacaccttgccatggagagatgttcactttgctaattacttgttttgct
gctgagacaaagtactccacagaagacatggagaaggaaggcttgattct
ggcttgctgttcaccatggtgggaaaagtgggggatggggtggcactggg
ggccaggggaaggccagccctcctgtaacactgaatcagcagtcaggaag
tacagagtgaatggaaagtagagccaggctataaaatgtcaaggctcacc
ctgagtgacatattccctccacctccccaaacatccgacatatcacctgc
tgctgggaaccgagtgtcctaaaccttgggccaatgggggaacacttcac
actttgaactgttacagtcacagcagagcatgggagcttctcacagtagg
ctaatcaaacacaaatggaagatgatcagatgagctgagcccactttccg
gactgacctcctagaagatagctccaccactgagatgtaaatgaaggaga
tatggagaaatgattcaatagttcccttgacaagtaattgactacataag
aatgcaaaggagacagcctttgtttcctagccatcttaatgttaagtata
tcagctattgaagctcttgacttgaatctgatccaaggtcacacagtcaa
ttttc
gaattcacgctccccacgatgaagtgtgattcaggatacagaagccaaat
aaactctttcctctccaagtggctttggtcatggtgtttcatcacagcaa
tggacaccctaaaacaatggtggacttaatgagatgacagactacatctt
tatctctgtaccttggtttgaccactctgtggtgaagcaagctatcaaca
tgtagaagatggggctggagagatggctcagcagttaagagcactaacta
ctctcccaaaggtcccgagttcaaatcccagcaaccacatggtagctcac
aaacatctgtaatgggatctgatactcttttctggtgtgtctgaagacag
ctacagtatatatatatatgtatgtatatatatatatgtatatatatata
tatatatatatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5046293_5047443
seq2: B6Ng01-150I14.b_46_1200

seq1  GAATTCACACCACAGTCTTTCTCCGCTTCCACCCAGTCCTCTCTATAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCACAGTCTTTCTCCGCTTCCACCCAGTCCTCTCTATAGTC  50

seq1  GAATGTGCCAGTCCTCTCGTCTTTAAGAAAAAAATTGCAAACTCCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCCAGTCCTCTCGTCTTTAAGAAAAAAATTGCAAACTCCCAGCA  100

seq1  GAATTCATGTCATGACTAAAAATCACCCAAAAGTGTATGTGGCACTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCATGACTAAAAATCACCCAAAAGTGTATGTGGCACTTCCT  150

seq1  TCATCCAGGACCCCAGCAGAGATCAAGAGCCATGAGCACCCAATTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGGACCCCAGCAGAGATCAAGAGCCATGAGCACCCAATTATATG  200

seq1  AATTGGGTATTACTTTATCTAACCCGGTCATATCCTTCCCTAGTGGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTATTACTTTATCTAACCCGGTCATATCCTTCCCTAGTGGACTG  250

seq1  GCTCTTAATTACAGTAAGCAGATGTTACAGAAGTAGCTGTTGTGCCGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAATTACAGTAAGCAGATGTTACAGAAGTAGCTGTTGTGCCGTTG  300

seq1  ATCAGAGAGTAGAAAGATGGAGAAAAGTCTGTGTGTGTTCAGTACGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAGTAGAAAGATGGAGAAAAGTCTGTGTGTGTTCAGTACGGACA  350

seq1  CGATCATTTAAAATACAGATTCAGTACATTGTTGCTGGAATCTGCAGACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCATTTAAAATACAGATTCAGTACATTGTTGCTGGAATCTGCAGACG  400

seq1  TGAAACCCAAGGATAAGGTGACACAGCCACTGTACTTGTTTGGCAGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCAAGGATAAGGTGACACAGCCACTGTACTTGTTTGGCAGCCCC  450

seq1  GTTTGATAACTACTGAGACAGGGCCCCTGGCAGGCTTTGGTTCTGCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATAACTACTGAGACAGGGCCCCTGGCAGGCTTTGGTTCTGCTTTT  500

seq1  GGACACCTTGCCATGGAGAGATGTTCACTTTGCTAATTACTTGTTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTTGCCATGGAGAGATGTTCACTTTGCTAATTACTTGTTTTGCT  550

seq1  GCTGAGACAAAGTACTCCACAGAAGACATGGAGAAGGAAGGCTTGATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACAAAGTACTCCACAGAAGACATGGAGAAGGAAGGCTTGATTCT  600

seq1  GGCTTGCTGTTCACCATGGTGGGAAAAGTGGGGGATGGGGTGGCACTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTGTTCACCATGGTGGGAAAAGTGGGGGATGGGGTGGCACTGGG  650

seq1  GGCCAGGGGAAGGCCAGCCCTCCTGTAACACTGAATCAGCAGTCAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGGGAAGGCCAGCCCTCCTGTAACACTGAATCAGCAGTCAGGAAG  700

seq1  TACAGAGTGAATGGAAAGTAGAGCCAGGCTATAAAATGTCAAGGCTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAATGGAAAGTAGAGCCAGGCTATAAAATGTCAAGGCTCACC  750

seq1  CTGAGTGACATATTCCCTCCACCTCCCCAAACATCCGACATATCACCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGACATATTCCCTCCACCTCCCCAAACATCCGACATATCACCTGC  800

seq1  TGCTGGGAACCGAGTGTCCTAAACCTTGGGCCAATGGGGGAACACTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAACCGAGTGTCCTAAACCTTGGGCCAATGGGGGAACACTTCAC  850

seq1  AC-TTGAACTGTAACAGTCACAGCAGAGCATGGGAGCTTCTCACAGTTAG  899
      || ||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  ACTTTGAACTGTTACAGTCACAGCAGAGCATGGGAGCTTCTCACAG-TAG  899

seq1  GCT-ATCAAACACAAATGGAAGGATGATCAGGATGAGCTGAGCCCACTTT  948
      ||| ||||||||||||||||| |||||||| |||||||||||||||||||
seq2  GCTAATCAAACACAAATGGAA-GATGATCA-GATGAGCTGAGCCCACTTT  947

seq1  CCGGACTGACCTCCTAGAAAGATAGGCTCCACCACTGAGATGTAAATGAA  998
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  CCGGACTGACCTCCTAG-AAGATA-GCTCCACCACTGAGATGTAAATGAA  995

seq1  GGAGATATGGCAGAAATGGATTC-ATAGT--CCCTGACAGGT-ATTGACT  1044
      |||||||||| |||||| ||||| |||||  || ||||| || |||||||
seq2  GGAGATATGG-AGAAAT-GATTCAATAGTTCCCTTGACAAGTAATTGACT  1043

seq1  ACATTAAGAAGGCAAA-GAGACAGCCTT--GTTCCCAG-CATCTTAATGT  1090
      ||| |||||| ||||| |||||||||||   |||| || |||||||||||
seq2  ACA-TAAGAATGCAAAGGAGACAGCCTTTGTTTCCTAGCCATCTTAATGT  1092

seq1  TAAAGTTATATCAGCTAT--GAGCTCTTGTCTGGATCCTGATCCAATGTC  1138
      |||   ||||||||||||   |||||||| || ||  ||||||||| |||
seq2  TAA--GTATATCAGCTATTGAAGCTCTTGACTTGAATCTGATCCAAGGTC  1140

seq1  A-ACAGTC-ATTTTC  1151
      | |||||| ||||||
seq2  ACACAGTCAATTTTC  1155

seq1: chr1_45855503_45855732
seq2: B6Ng01-150I14.g_277_453 (reverse)

seq1  ACATATATATATATATACTTGAATATACAATTCTTTTTTTTTTCTTTAAA  50
        | ||||||||||||||      |||||                     
seq2  --ACATATATATATATAC------ATACA---------------------  21

seq1  GTTTTAAGATTTATTTATTTCATGTATGTGAGTATACTGTAGCTGTCTTC  100
                 ||| |||              ||||||||||||||||||
seq2  -----------TATATAT-------------ATATACTGTAGCTGTCTTC  47

seq1  AGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCA  150
      ||||||||||||| || | |||||||||||||||||||| |||||||| |
seq2  AGACACACCAGAAAAGAGTATCAGATCCCATTACAGATGTTTGTGAGCTA  97

seq1  CCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGT  200
      ||||||||||||||||| |||||||| |||||| ||| |||| ||| |||
seq2  CCATGTGGTTGCTGGGATTTGAACTCGGGACCTTTGGGAGAGTAGTTAGT  147

seq1  GCTCTTAACCACTGGGCCATCTCTCCAGCC  230
      |||||||||  ||| |||||||||||||||
seq2  GCTCTTAACTGCTGAGCCATCTCTCCAGCC  177