BAC Information

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BAC

Clone NameB6Ng01-150L24
Chromosome10 (Build37)
Map Location 108,359,623 - 108,407,414
singlet/doubletdoublet
Overlap geneSyt1
Upstream genePpp1r12a, Pawr, EG667814, EG368203
Downstream geneNav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150L24.bB6Ng01-150L24.g
ACCDH946750DH946751
length1,134843
definitionDH946750|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L24, 5' end.DH946751|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,406,242 - 108,407,414)(108,359,623 - 108,360,464)
sequence
gaattcatcctgtccctggaaaaacacagaaactcaaggaaaggaatctc
tcaaggatgctctaggtttcaaaattaacctttagtggatagaggctgag
ctaggaggaaatcactttatctcgattaagctctctttctttttatctat
aatcttcaaaaattctataagaatttttcttttcagtcagctgatatgca
tgggatgtctatttctatgcacagcagatatttcttattacgtggtatca
gtgaagtggtcattgtaaacttgcagaacctaaagccagatgtgttttct
ttgaggactagtaatattactaaatataatgttattttaagactacatgg
tgcaaccccagagaacccaggcaatcatcctgccagtgctggtaatctaa
taactcggacttgagatggaccagaattccaaggctgcttcttagatgag
aatttgtcccaatcattctgttttactactttgaactgaaaaaccaaggt
ctctcctggtcactaagacacaatttgccacattccattgtgtgttaaaa
tatttccaattattcttagattataagcccatcacataaacaagacgggc
tcaacaagatgctattcaaattgccaaaaaaagacacactgataaatggt
ctggcaaagacagagtctaatgtcttcgtccatatcagaaatcacttcag
tgagcagctaaagtattttctattttgttttggttttgagtaagtcagtt
ttgtttctgtacttggggactgaaaatacctagatagccatttctgttgc
acacatccacgaggaatccatttaaaatcagatcacaatttacttatgta
aaattaagaacttttcatcaaccaaagatttataatcccgacaggacaag
gagaagttttgaattgcatgttatgtttaatgtacatctgatggtccata
ttaaaccagtaagtacatatatatctcatgctcttagcactctacactct
atcatattcatactctttactatagtgtcttatgtagtgtgtgtagtagt
gctcatttttcgacttttaaataaatgcatattcaggtgagtatttttat
catttgtttcctttgaaaaataagttactatttc
gaattctgactctcaaagaaatgcagagaacaaaagcttttcttcttgaa
agaaataaaaaataattctggctcaaccgacctactggctgtgtgaccac
aggtaaatgacttaatatttctgagcccagcgaaaagctgtaaaaataaa
gtgataatccctgatgccagagagtttttacattttctgaaataatgtga
gcactgagctgggtgcttaagtgcttctgtaggtggcagaacacgagagt
tgggggggggttcctaaaatatagagggaaaaaaagcatgtttttattaa
agtagaaggaaaagaaatataaacacttctgatgtgttctgaatggagac
atataaataatatctagtggacagaaactaagtacatttccccatgagtt
tttgccaaccagtagatgcctgctagaagccaggatgtgcccttgggaag
ctaatatacatgtatatatatatatatattttcaagtatactcacacatc
catacttgatggtggaagtgtgaaatccagtgtgaagctccacagcctcg
cggtgcttgttctaactacgaagctcattgagatgtacagactttgggtc
tggttaattttgctaataacacaatatactattatataatatataatata
tagcatataatctggttatattatcttttgcccaattttttttaaacaat
aaacattaattttaaaaaaatttaaaaaaaggaataacaaataggaagcc
agactataaatataagcaatgagtctctagattccttgactgcctgcttt
atatttatataactggaatgagaggaggaaactgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_108406242_108407414
seq2: B6Ng01-150L24.b_28_1161 (reverse)

seq1  GAAATAGTACATGTATTTTTTTAAAAAGAAAACAAATAGATAAAAAATAA  50
      ||||||||| |  |||||||    |||| |||||||| ||||||||   |
seq2  GAAATAGTA-ACTTATTTTT---CAAAGGAAACAAAT-GATAAAAA--TA  43

seq1  CTCACCCTGAATATGCATTTATTTTAAAAAGTCTGAAAAAATGAAGGCAC  100
      |||| |||||||||||||||||||  |||||||   ||||||||  ||||
seq2  CTCA-CCTGAATATGCATTTATTT--AAAAGTC--GAAAAATGA--GCAC  86

seq1  TAAACTAACCACACACTTACATAAGACAACTATAGTTAAAGAAGTTAATG  150
      |  ||||  ||||||| |||||||||| ||||||| ||||| |||  |||
seq2  T--ACTA--CACACAC-TACATAAGAC-ACTATAG-TAAAG-AGT--ATG  126

seq1  GAAATATGAATAAGAGTGTAGAGTGCTTAAGGAGCATGGAGAATAATAAT  200
        |||||||   |||||||||||||||  | |||||| ||||      ||
seq2  --AATATGA--TAGAGTGTAGAGTGCT--AAGAGCAT-GAGA-----TAT  164

seq1  AATTGTAACTTACTGGTTTAATATTGGACCAATCAGATGTACATTAAACA  250
      |  ||| |||||||||||||||| |||||| |||||||||||||||||||
seq2  ATATGT-ACTTACTGGTTTAATA-TGGACC-ATCAGATGTACATTAAACA  211

seq1  TAACATGCAATTCAAAACTTCTCCTTGTCCTGTCGGGATTATAAATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCAATTCAAAACTTCTCCTTGTCCTGTCGGGATTATAAATCTTT  261

seq1  GGTTGATGAAAAGTTCTTAATTTTACATAAGTAAATTGTGATCTGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGAAAAGTTCTTAATTTTACATAAGTAAATTGTGATCTGATTTT  311

seq1  AAATGGATTCCTCGTGGATGTGTGCAACAGAAATGGCTATCTAGGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTCCTCGTGGATGTGTGCAACAGAAATGGCTATCTAGGTATTT  361

seq1  TCAGTCCCCAAGTACAGAAACAAAACTGACTTACTCAAAACCAAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCCAAGTACAGAAACAAAACTGACTTACTCAAAACCAAAACAAA  411

seq1  ATAGAAAATACTTTAGCTGCTCACTGAAGTGATTTCTGATATGGACGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATACTTTAGCTGCTCACTGAAGTGATTTCTGATATGGACGAAG  461

seq1  ACATTAGACTCTGTCTTTGCCAGACCATTTATCAGTGTGTCTTTTTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGACTCTGTCTTTGCCAGACCATTTATCAGTGTGTCTTTTTTTGG  511

seq1  CAATTTGAATAGCATCTTGTTGAGCCCGTCTTGTTTATGTGATGGGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGAATAGCATCTTGTTGAGCCCGTCTTGTTTATGTGATGGGCTTA  561

seq1  TAATCTAAGAATAATTGGAAATATTTTAACACACAATGGAATGTGGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAGAATAATTGGAAATATTTTAACACACAATGGAATGTGGCAAA  611

seq1  TTGTGTCTTAGTGACCAGGAGAGACCTTGGTTTTTCAGTTCAAAGTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTTAGTGACCAGGAGAGACCTTGGTTTTTCAGTTCAAAGTAGTA  661

seq1  AAACAGAATGATTGGGACAAATTCTCATCTAAGAAGCAGCCTTGGAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATGATTGGGACAAATTCTCATCTAAGAAGCAGCCTTGGAATTC  711

seq1  TGGTCCATCTCAAGTCCGAGTTATTAGATTACCAGCACTGGCAGGATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATCTCAAGTCCGAGTTATTAGATTACCAGCACTGGCAGGATGAT  761

seq1  TGCCTGGGTTCTCTGGGGTTGCACCATGTAGTCTTAAAATAACATTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGTTCTCTGGGGTTGCACCATGTAGTCTTAAAATAACATTATAT  811

seq1  TTAGTAATATTACTAGTCCTCAAAGAAAACACATCTGGCTTTAGGTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATATTACTAGTCCTCAAAGAAAACACATCTGGCTTTAGGTTCTG  861

seq1  CAAGTTTACAATGACCACTTCACTGATACCACGTAATAAGAAATATCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTACAATGACCACTTCACTGATACCACGTAATAAGAAATATCTGC  911

seq1  TGTGCATAGAAATAGACATCCCATGCATATCAGCTGACTGAAAAGAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATAGAAATAGACATCCCATGCATATCAGCTGACTGAAAAGAAAAA  961

seq1  TTCTTATAGAATTTTTGAAGATTATAGATAAAAAGAAAGAGAGCTTAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAGAATTTTTGAAGATTATAGATAAAAAGAAAGAGAGCTTAATC  1011

seq1  GAGATAAAGTGATTTCCTCCTAGCTCAGCCTCTATCCACTAAAGGTTAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAGTGATTTCCTCCTAGCTCAGCCTCTATCCACTAAAGGTTAAT  1061

seq1  TTTGAAACCTAGAGCATCCTTGAGAGATTCCTTTCCTTGAGTTTCTGTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACCTAGAGCATCCTTGAGAGATTCCTTTCCTTGAGTTTCTGTGT  1111

seq1  TTTTCCAGGGACAGGATGAATTC  1173
      |||||||||||||||||||||||
seq2  TTTTCCAGGGACAGGATGAATTC  1134

seq1: chr10_108359623_108360464
seq2: B6Ng01-150L24.g_68_910

seq1  GAATTCTGACTCTCAAAGAAATGCAGAGAACAAAAGCTTTTCTTCTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACTCTCAAAGAAATGCAGAGAACAAAAGCTTTTCTTCTTGAA  50

seq1  AGAAATAAAAAATAATTCTGGCTCAACCGACCTACTGGCTGTGTGACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAAAATAATTCTGGCTCAACCGACCTACTGGCTGTGTGACCAC  100

seq1  AGGTAAATGACTTAATATTTCTGAGCCCAGCGAAAAGCTGTAAAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATGACTTAATATTTCTGAGCCCAGCGAAAAGCTGTAAAAATAAA  150

seq1  GTGATAATCCCTGATGCCAGAGAGTTTTTACATTTTCTGAAATAATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATCCCTGATGCCAGAGAGTTTTTACATTTTCTGAAATAATGTGA  200

seq1  GCACTGAGCTGGGTGCTTAAGTGCTTCTGTAGGTGGCAGAACACGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAGCTGGGTGCTTAAGTGCTTCTGTAGGTGGCAGAACACGAGAGT  250

seq1  TGGGGGGGGGTTCCTAAAATATAGAGGGAAAAAAAGCATGTTTTTATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGGTTCCTAAAATATAGAGGGAAAAAAAGCATGTTTTTATTAA  300

seq1  AGTAGAAGGAAAAGAAATATAAACACTTCTGATGTGTTCTGAATGGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGGAAAAGAAATATAAACACTTCTGATGTGTTCTGAATGGAGAC  350

seq1  ATATAAATAATATCTAGTGGACAGAAACTAAGTACATTTCCCCATGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAATATCTAGTGGACAGAAACTAAGTACATTTCCCCATGAGTT  400

seq1  TTTGCCAACCAGTAGATGCCTGCTAGAAGCCAGGATGTGCCCTTGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAACCAGTAGATGCCTGCTAGAAGCCAGGATGTGCCCTTGGGAAG  450

seq1  CTAATATACATGTATATATATATATATATTTTCAAGTATACTCACACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATACATGTATATATATATATATATTTTCAAGTATACTCACACATC  500

seq1  CATACTTGATGGTGGAAGTGTGAAATCCAGTGTGAAGCTCCACAGCCTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTGATGGTGGAAGTGTGAAATCCAGTGTGAAGCTCCACAGCCTCG  550

seq1  CGGTGCTTGTTCTAACTACGAAGCTCATTGAGATGTACAGACTTTGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTTGTTCTAACTACGAAGCTCATTGAGATGTACAGACTTTGGGTC  600

seq1  TGGTTAATTTTGCTAATAACACAATATACTATTATATAATATATAATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATTTTGCTAATAACACAATATACTATTATATAATATATAATATA  650

seq1  TAGCATATAATCTGGTTATATTATCTTTTGCCCAA-TTTTTTTAAACAAT  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCATATAATCTGGTTATATTATCTTTTGCCCAATTTTTTTTAAACAAT  700

seq1  AAACATTAATTTTAAAAAAATTTAAAAAAAGGAATAACAAATAGGAAGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAATTTTAAAAAAATTTAAAAAAAGGAATAACAAATAGGAAGCC  750

seq1  AGACTATAAATATAAGCAATGAGTCTCTAGATTCCTTGACTGCCTGCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATAAATATAAGCAATGAGTCTCTAGATTCCTTGACTGCCTGCTTT  800

seq1  ATATTTATATAACTGGAATGAGAGGAGGAAACTGGGGGGGGGG  842
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATATAACTGGAATGAGAGGAGGAAACTGGGGGGGGGG  843