BAC Information

Click to search

BAC

Clone NameB6Ng01-151A01
Chromosome10 (Build37)
Map Location 75,269,467 - 75,437,299
singlet/doubletdoublet
Overlap geneGstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669
Upstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1
Downstream geneSuhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151A01.bB6Ng01-151A01.g
ACCDH946936DH946937
length1,0711,079
definitionDH946936|Mus musculus domesticus DNA, BAC clone: B6Ng01-151A01, 5' end.DH946937|Mus musculus domesticus DNA, BAC clone: B6Ng01-151A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,436,227 - 75,437,299)(75,269,467 - 75,270,528)
sequence
gaattcaaattcccagcaactgcattatggctcacaaccatcagtacagc
tatggtgtactcacatacattaaagaaagagagagagagagagagagaga
gagagagagagagagagagagagagagagagatcactggatggtcttgac
acagttttgcttagatgacactccctccccatcattcctcagaggaggaa
ggtcacctctgtggagaggcattccaaggacttgcccagacagtcccttc
tccttgtgcaaagactcaccgagatcctgctgaagatatagacgattaag
aaaatgaaagtgaagaacagctggatgcggaggctgccaaacctcttctt
cagatattctggcaatgtcaccacctgcaaaggcaacagagcaagatgct
gtcagacagtgagcggtcaggaggcaggtcacgggatggcctttcctgcc
ggatggtggagacagctccggagtacaagatgtgggattgctgcctttgg
cgccagttgaggtgtgatcaaggagggaggagaggcagtatagctctgta
ctggctggttttgtgcgccaacctgatagagagttacatgaacaacttag
tgaatgccacagttattaaagcgtcatcagagaggagggagcctccgttg
aggaaatgcctccatgagctgtaaggcattttctcaatcggagatcaatg
ggggagggcccagaccactgagggtggtgccccccacccctccgtgggct
ggtggtcctggtttctataagaaagcaagctgaacagctatgcggagcag
cacccctccatggcctctgcatcagctcctgcctgtcctgtgtgagttcc
tgacttcagttatgaacggcaatgttgaagtgtaagccaaataccacccc
cccagcttgttttttgtcatgggtgttctgtcacagtagtagaatctgac
tgagacagctgtctaccagcagcttaaggtccaggctctgtggagaagaa
ccagcttattgtaatgtgcaatatgaataattatccattattggaacaaa
caggagtctctttgtcacgtt
gaattcaagagactttccagagtttagacgccatcattaagaactcaaaa
ctcttaaatggattaatcagtatgggtgtcaataaaggtctcaagtgcat
cattccaacatacccctttcaataaggtcatgcctttcctaatcttccta
aacaatccaccaactggaaccaagcattcaaatatatgagtgtatggaac
cactctcatacaaatcaccactgccacccataagcagtgttttgaggccc
tttcttctcaatgcttttgttacagagacccagtgggtacctgttggaat
ttgcaggtttatgtatccttgaataagaattcagagatgggggctaggga
gatggctcagtggttaagggcactgactgctcttcctaaggccctgagtt
caaatcccagccacaacatggtggctcacggctatccataatgagctctg
actccctcttctggagtgtctaaagacagctacagtgtactcatatttaa
taaaataaaataaaaaagaattcagagagaaacaaaaagacagtaagaag
agggagtttatcaagggaaaaagaggcatttctgtccctaccccgtcctg
aggatttatgagcagctaacagttgatgagaaagatgtttcttcagtgct
gtaaccactggaaaggtgctcgtggtcatttgaataagaatgccccccac
aggctcatatagttgatgcatagtcaccagtggaactatctgagaaagaa
ttaggaggtgtggccttgttaagtgggtgtggcttttgtcagagtgggtg
tggccttgttggaggaggtgtgtttactgggaggaatactttgagatttc
aaaagctcaatcaagccaggctcactcagtcagtctctctctctctctct
cttttctcttctctttctctctctctccctgctgtgtggggatctgcata
atagagctctcagcttcctcttcagcacccatggtcttgtcttgataaat
gcatcccctctgccatggatgaataatggaatatagacctctgaaactgg
aagaaaaagtccacattaagtttcccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_75436227_75437299
seq2: B6Ng01-151A01.b_45_1115 (reverse)

seq1  AACGTGACAAAGA-ACTCCTGTTTGTTCC-ATAATGGATAATTTATCATT  48
      ||||||||||||| ||||||||||||||| |||||||||||||  ||| |
seq2  AACGTGACAAAGAGACTCCTGTTTGTTCCAATAATGGATAATTATTCA-T  49

seq1  ATTGCACATTTACAATTAGCTGGGTTTCTCTCCACAGAGCCTGGAACCTA  98
      |||||||| ||||||| |||| ||||  ||||||||||||||||| | ||
seq2  ATTGCACA-TTACAATAAGCT-GGTTCTTCTCCACAGAGCCTGGACCTTA  97

seq1  AGCTGCTGGTAGACAGCTGTCTCAGTCAGAATTCTACTACTGTGACAGAA  148
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTGCTGGTAGACAGCTGTCTCAGTCAG-ATTCTACTACTGTGACAGAA  146

seq1  CA-CCATGACAAAAAAACAAGCT-GGGGGGTGGTATTTGGCTTACACTTC  196
      || ||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  CACCCATGAC-AAAAAACAAGCTGGGGGGGTGGTATTTGGCTTACACTTC  195

seq1  AACATTGCCGTTCATAACTGAAGTCAGGAACTCACACAGGACAGGCAGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCCGTTCATAACTGAAGTCAGGAACTCACACAGGACAGGCAGGA  245

seq1  GCTGATGCAGAGGCCATGGAGGGGTGCTGCTCCGCATAGCTTGTTCAGCT  296
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTGATGCAGAGGCCATGGAGGGGTGCTGCTCCGCATAGC-TGTTCAGCT  294

seq1  TGCTTTCTTATAGAAACCAGGACCACCAGCCCACGGAGGGGTGGGGGGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTATAGAAACCAGGACCACCAGCCCACGGAGGGGTGGGGGGCA  344

seq1  CCACCCTCAGTGGTCTGGGCCCTCCCCCATTGATCTCCGATTGAGAAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCAGTGGTCTGGGCCCTCCCCCATTGATCTCCGATTGAGAAAAT  394

seq1  GCCTTACAGCTCATGGAGGCATTTCCTCAACGGAGGCTCCCTCCTCTCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACAGCTCATGGAGGCATTTCCTCAACGGAGGCTCCCTCCTCTCTG  444

seq1  ATGACGCTTTAATAACTGTGGCATTCACTAAGTTGTTCATGTAACTCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGCTTTAATAACTGTGGCATTCACTAAGTTGTTCATGTAACTCTCT  494

seq1  ATCAGGTTGGCGCACAAAACCAGCCAGTACAGAGCTATACTGCCTCTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTTGGCGCACAAAACCAGCCAGTACAGAGCTATACTGCCTCTCCT  544

seq1  CCCTCCTTGATCACACCTCAACTGGCGCCAAAGGCAGCAATCCCACATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTGATCACACCTCAACTGGCGCCAAAGGCAGCAATCCCACATCT  594

seq1  TGTACTCCGGAGCTGTCTCCACCATCCGGCAGGAAAGGCCATCCCGTGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCGGAGCTGTCTCCACCATCCGGCAGGAAAGGCCATCCCGTGAC  644

seq1  CTGCCTCCTGACCGCTCACTGTCTGACAGCATCTTGCTCTGTTGCCTTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTGACCGCTCACTGTCTGACAGCATCTTGCTCTGTTGCCTTTG  694

seq1  CAGGTGGTGACATTGCCAGAATATCTGAAGAAGAGGTTTGGCAGCCTCCG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTGACATTGCCAGAATATCTGAAGAAGAGGTTTGGCAGCCTCCG  744

seq1  CATCCAGCTGTTCTTCACTTTCATTTTCTTAATCGTCTATATCTTCAGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCTGTTCTTCACTTTCATTTTCTTAATCGTCTATATCTTCAGCA  794

seq1  GGATCTCGGTGAGTCTTTGCACAAGGAGAAGGGACTGTCTGGGCAAGTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCGGTGAGTCTTTGCACAAGGAGAAGGGACTGTCTGGGCAAGTCC  844

seq1  TTGGAATGCCTCTCCACAGAGGTGACCTTCCTCCTCTGAGGAATGATGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGCCTCTCCACAGAGGTGACCTTCCTCCTCTGAGGAATGATGGG  894

seq1  GAGGGAGTGTCATCTAAGCAAAACTGTGTCAAGACCATCCAGTGATCTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTGTCATCTAAGCAAAACTGTGTCAAGACCATCCAGTGATCTCT  944

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  994

seq1  TTCTTTAATGTATGTGAGTACACCATAGCTGTACTGATGGTTGTGAGCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATGTATGTGAGTACACCATAGCTGTACTGATGGTTGTGAGCCA  1044

seq1  TAATGCAGTTGCTGGGAATTTGAATTC  1073
      |||||||||||||||||||||||||||
seq2  TAATGCAGTTGCTGGGAATTTGAATTC  1071

seq1: chr10_75269467_75270528
seq2: B6Ng01-151A01.g_68_1146

seq1  GAATTCAAGAGACTTTCCAGAGTTTAGACGCCATCATTAAGAACTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGACTTTCCAGAGTTTAGACGCCATCATTAAGAACTCAAAA  50

seq1  CTCTTAAATGGATTAATCAGTATGGGTGTCAATAAAGGTCTCAAGTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAATGGATTAATCAGTATGGGTGTCAATAAAGGTCTCAAGTGCAT  100

seq1  CATTCCAACATACCCCTTTCAATAAGGTCATGCCTTTCCTAATCTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAACATACCCCTTTCAATAAGGTCATGCCTTTCCTAATCTTCCTA  150

seq1  AACAATCCACCAACTGGAACCAAGCATTCAAATATATGAGTGTATGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCACCAACTGGAACCAAGCATTCAAATATATGAGTGTATGGAAC  200

seq1  CACTCTCATACAAATCACCACTGCCACCCATAAGCAGTGTTTTGAGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATACAAATCACCACTGCCACCCATAAGCAGTGTTTTGAGGCCC  250

seq1  TTTCTTCTCAATGCTTTTGTTACAGAGACCCAGTGGGTACCTGTTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCAATGCTTTTGTTACAGAGACCCAGTGGGTACCTGTTGGAAT  300

seq1  TTGCAGGTTTATGTATCCTTGAATAAGAATTCAGAGATGGGGGCTAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTTTATGTATCCTTGAATAAGAATTCAGAGATGGGGGCTAGGGA  350

seq1  GATGGCTCAGTGGTTAAGGGCACTGACTGCTCTTCCTAAGGCCCTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGTGGTTAAGGGCACTGACTGCTCTTCCTAAGGCCCTGAGTT  400

seq1  CAAATCCCAGCCACAACATGGTGGCTCACGGCTATCCATAATGAGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGCCACAACATGGTGGCTCACGGCTATCCATAATGAGCTCTG  450

seq1  ACTCCCTCTTCTGGAGTGTCTAAAGACAGCTACAGTGTACTCATATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCTTCTGGAGTGTCTAAAGACAGCTACAGTGTACTCATATTTAA  500

seq1  TAAAATAAAATAAAAAAGAATTCAGAGAGAAACAAAAAGACAGTAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATAAAAAAGAATTCAGAGAGAAACAAAAAGACAGTAAGAAG  550

seq1  AGGGAGTTTATCAAGGGAAAAAGAGGCATTTCTGTCCCTACCCCGTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTTATCAAGGGAAAAAGAGGCATTTCTGTCCCTACCCCGTCCTG  600

seq1  AGGATTTATGAGCAGCTAACAGTTGATGAGAAAGATGTTTCTTCAGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTATGAGCAGCTAACAGTTGATGAGAAAGATGTTTCTTCAGTGCT  650

seq1  GTAACCACTGGAAAGGTGCTCGTGGTCATTTGAATAAGAATGCCCCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCACTGGAAAGGTGCTCGTGGTCATTTGAATAAGAATGCCCCCCAC  700

seq1  AGGCTCATATAGTTGATGCATAGTCACCAGTGGAACTATCTGAG-AAGAA  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGCTCATATAGTTGATGCATAGTCACCAGTGGAACTATCTGAGAAAGAA  750

seq1  TTAGGAGGTGTGGCCTTGTTAAGTGGGTGTGGC-TTTGTCAGAGTGGGTG  798
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAGGAGGTGTGGCCTTGTTAAGTGGGTGTGGCTTTTGTCAGAGTGGGTG  800

seq1  TGGCCTTGTTGGAGGAGGTGTG-TTACT-GGAGGATGACTTTGAGATTTC  846
      |||||||||||||||||||||| ||||| ||||||  |||||||||||||
seq2  TGGCCTTGTTGGAGGAGGTGTGTTTACTGGGAGGAATACTTTGAGATTTC  850

seq1  AAAAGCTCAATCAAGCCAGGCTCACTCAGTCAGTCTCTCTCTCTCTCTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCAATCAAGCCAGGCTCACTCAGTCAGTCTCTCTCTCTCTCTCT  900

seq1  CTCTCTCTC-TCTCTTTCTCTCTCTCTCCCTGCTGTGTGTGGATCTGCAT  945
      || | |||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CT-TTTCTCTTCTCTTTCTCTCTCTCTCCCTGCTGTGTGGGGATCTGCAT  949

seq1  -ATAGAGCTCTCAGC-TCCTCTTCAGCA-CCAT-GTC-TGTCTGTAT-AA  989
       |||||||||||||| |||||||||||| |||| ||| |||||  || ||
seq2  AATAGAGCTCTCAGCTTCCTCTTCAGCACCCATGGTCTTGTCTTGATAAA  999

seq1  TGCATCCCCTCTGCCAT-GATG-ATAATGG-ATTTA-ACCTCTGAAACTG  1035
      ||||||||||||||||| |||| ||||||| || || |||||||||||||
seq2  TGCATCCCCTCTGCCATGGATGAATAATGGAATATAGACCTCTGAAACTG  1049

seq1  TAAG--AGAGTCC-CATTTAGTTTCCCTTT  1062
       |||  | ||||| |||| |||||||||||
seq2  GAAGAAAAAGTCCACATTAAGTTTCCCTTT  1079