BAC Information

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BAC

Clone NameB6Ng01-152D20
Chromosome10 (Build37)
Map Location 127,400,371 - 127,514,468
singlet/doubletdoublet
Overlap geneHsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3
Upstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468
Downstream geneAtp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152D20.bB6Ng01-152D20.g
ACCDH947861DH947862
length1,2041,133
definitionDH947861|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D20, 5' end.DH947862|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,400,371 - 127,401,583)(127,513,354 - 127,514,468)
sequence
gaattcttttaatagatatttaaaaagtactaaaaaaaaaaaaaaaagac
agcagatgaattttgcttacttagtgaccttaagatcacccacgttctca
ctcttcttgtccctaaatctaagcagtgaaatgtaaaactactttataga
gccaaccccttcacgttacatctgagaccccacaggaatgaatatatacc
ccatactataaatctggtcagatcaaatggggagttccaaagttctagtg
cagagcctcatacacttgctttgctaagtagacacgatatatctgtcaac
ttgccttctaaatacttgattatgactatagatcagaactactgtcatgt
ctggccagagaatcttcttttagctgtgagcagtggtaactgcagattcc
taactgctcaactggctaagaatacgtgactatcctcagccataaatgtg
gcctctctattgtcctacactggctagttttaaatgaacttgacacaaac
tggagtcatctgagaaaatgttcccggggactgacgagatggctcaggga
aagaggagaggagagaaggaaaaaagaaaaagaagaaaaagaaaaaagga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaaaggaaagcaggctgagcaagccttgaggagcaaaccag
gaagcagaggccttccatggcctccacatcagctctgccccaaggttcct
gccctgactttcgtctgtgatggtgtactatggaaatgtaagggaaataa
accctttcctccccaagttgctgtgggcatgatgtttcatcacagcaaca
gaaatcttaagacacaccctgctccaaggctcagagtgcagaaagatgta
gaagccagtggagcagagtggaacacagacttctgggctccactcactct
cctggctcttgctctcacagcagctgtgacaccctactgtgacggaaggt
tagggtctcatgacatcaactgttcctcgagtcctgtagtcatcttctgt
cttgagttcctgtcctgcctccacttcatggtgactgtaactgtaagaag
agaaaaacagaagtacatcataagccaaatccatagagacatctccagat
aaggccctcctgtccagggggctctaattgtatgaactgacaaaaccagt
ccgg
gaattcaggtaatatctccttaaaatgatgagtgtggggtgttcgttatc
actattagctttagagcactggaacatacttttacgtcagtcagtggttc
tcaatctggatcaaagcagtaaacaaggtgacactgctaattcaggagtg
aaaatgtacaggaggacaacacattcacttttatttcagtcaagtcacaa
cacttgtctggctgctgccaagtgcccacagcttcccatttacagacaca
ctttacagggtttcctgtgacagtacagcaagcctctttgttcaaacagg
accagtccaaattttccctcaaaaaaacaaaacaaaaaaaaaaaaaaaac
caaactccattccagtaaggggtaaatacatgaaattacagcaaacagac
acttaaaaggacagccaagaaatcttccaacagtttattagaaagaatgt
agacatttaaaaaaatccccactgtcatgaacataaattgaggttttcca
gccagggcataagctgaaatcaaaacagaaaataaaaaaaatccaatagt
gtatttaacattgtccactcatttgccatactgactgtgcaaatacaaat
ctggtctaaaatgtacatactctcaagcaacaatgtacagctttctttgt
cctccatgctaagagatgtaaaagcttaagggccaaacaataccaagtgt
ataggcttcaaaaaccatctaagttagggcatccactagtttttgctaaa
atacacctgaacactgacaagtgatcacatacaatgatgtaaagtacatt
ttttttttttttgaaaaaataaattttagtggaataaattttgaaagggt
attctgaaagaatggcagggtttattcagtttaaggtattagccaatttg
tttcccccctcctttaatctcatgggtctagggatctaaaactttcatct
ttccctaagctgagagctttcttaaggtgtaagtaattgtggttatgatg
aaagacttagaatgaaatgcaatttatttgttcgagtctgcctggagcag
ttgcctaggatcaactgccctccatggaatcatggggaatgtccaagccc
taggtactgctttagctgtgacctaatcgcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127400371_127401583
seq2: B6Ng01-152D20.b_45_1248

seq1  GAATTCTTTTAATAGATATTTAAAAAGTACTAAAAAAAAAAAAAAAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAATAGATATTTAAAAAGTACTAAAAAAAAAAAAAAAAGAC  50

seq1  AGCAGATGAATTTTGCTTACTTAGTGACCTTAAGATCACCCACGTTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGAATTTTGCTTACTTAGTGACCTTAAGATCACCCACGTTCTCA  100

seq1  CTCTTCTTGTCCCTAAATCTAAGCAGTGAAATGTAAAACTACTTTATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTGTCCCTAAATCTAAGCAGTGAAATGTAAAACTACTTTATAGA  150

seq1  GCCAACCCCTTCACGTTACATCTGAGACCCCACAGGAATGAATATATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCCCTTCACGTTACATCTGAGACCCCACAGGAATGAATATATACC  200

seq1  CCATACTATAAATCTGGTCAGATCAAATGGGGAGTTCCAAAGTTCTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTATAAATCTGGTCAGATCAAATGGGGAGTTCCAAAGTTCTAGTG  250

seq1  CAGAGCCTCATACACTTGCTTTGCTAAGTAGACACGATATATCTGTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTCATACACTTGCTTTGCTAAGTAGACACGATATATCTGTCAAC  300

seq1  TTGCCTTCTAAATACTTGATTATGACTATAGATCAGAACTACTGTCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCTAAATACTTGATTATGACTATAGATCAGAACTACTGTCATGT  350

seq1  CTGGCCAGAGAATCTTCTTTTAGCTGTGAGCAGTGGTAACTGCAGATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGAGAATCTTCTTTTAGCTGTGAGCAGTGGTAACTGCAGATTCC  400

seq1  TAACTGCTCAACTGGCTAAGAATACGTGACTATCCTCAGCCATAAATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTCAACTGGCTAAGAATACGTGACTATCCTCAGCCATAAATGTG  450

seq1  GCCTCTCTATTGTCCTACACTGGCTAGTTTTAAATGAACTTGACACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTATTGTCCTACACTGGCTAGTTTTAAATGAACTTGACACAAAC  500

seq1  TGGAGTCATCTGAGAAAATGTTCCCGGGGACTGACGAGATGGCTCAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCATCTGAGAAAATGTTCCCGGGGACTGACGAGATGGCTCAGGGA  550

seq1  AAGAGGAGAGGAGAGAAGGAAAAAAGAAAAAGAAGAAAAAGAAAAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAGGAGAGAAGGAAAAAAGAAAAAGAAGAAAAAGAAAAAAGGA  600

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  650

seq1  GAAAGAAAGAAAAGGAAAGCAGGCTGAGCAAGCCTTGAGGAGCAAACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAAGGAAAGCAGGCTGAGCAAGCCTTGAGGAGCAAACCAG  700

seq1  GAAGCAGAGGCCTTCCATGGCCTCCACATCAGCTCTGCCCCAAGGTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGCCTTCCATGGCCTCCACATCAGCTCTGCCCCAAGGTTCCT  750

seq1  GCCCTGACTTTCGTCTGTGATGGTGTACTATGGAAATGTAAGGGAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGACTTTCGTCTGTGATGGTGTACTATGGAAATGTAAGGGAAATAA  800

seq1  ACCCTTTCCTCCCCAAGTTGCTGTGGGCATGATGTTTCATCACAGCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCCTCCCCAAGTTGCTGTGGGCATGATGTTTCATCACAGCAACA  850

seq1  GAAATCTTAAGACACACCCTGCTCCAAGGCTCAGAGTGCAGAAAGATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTAAGACACACCCTGCTCCAAGGCTCAGAGTGCAGAAAGATGTA  900

seq1  GAAGCCAGTGGAGCAGAGTGGAACACAGACTTCTGGGCTCCACTCACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGTGGAGCAGAGTGGAACACAGACTTCTGGGCTCCACTCACTCT  950

seq1  CCTGGCTCTTGCTCTCACAGCAGCTGTGACACCCTACTGTGAACGGAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTGGCTCTTGCTCTCACAGCAGCTGTGACACCCTACTGTG-ACGGAAGG  999

seq1  TTAGGGTCTCATGACATCACCTGTTCCTCGAGTCCTGTAGTCATCTTCTG  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAGGGTCTCATGACATCAACTGTTCCTCGAGTCCTGTAGTCATCTTCTG  1049

seq1  CCTTGAGTTCCTGTCCTGCCTTCACTTCATGGTGGACTGTAAACTGTAAG  1100
       |||||||||||||||||||| ||||||||||| |||||| |||||||||
seq2  TCTTGAGTTCCTGTCCTGCCTCCACTTCATGGT-GACTGT-AACTGTAAG  1097

seq1  AAGAAGAAGACAGGAAAGTACATCATAGGCCAATCCCATAGAGACAATTC  1150
      ||||  || ||||  |||||||||||| |||||  |||||||||||  ||
seq2  AAGAGAAAAACAG--AAGTACATCATAAGCCAAATCCATAGAGACA--TC  1143

seq1  CTCAGATAAGGCCCCTCCTG-CCAGGTGGCTCTAATTTGTATGAACTGAC  1199
        ||||||||| |||||||| ||||| |||||||| ||||||||||||||
seq2  TCCAGATAAGG-CCCTCCTGTCCAGGGGGCTCTAA-TTGTATGAACTGAC  1191

seq1  AAAAACAAGTCCGG  1213
       ||||| |||||||
seq2  -AAAACCAGTCCGG  1204

seq1: chr10_127513354_127514468
seq2: B6Ng01-152D20.g_69_1201 (reverse)

seq1  GGGGCGATTTAAGT--CAGCTAAGGCAGTATCCTTATGCATGAACATTTC  48
      ||||||| ||| ||  ||||||| |||||| |||   || || ||||| |
seq2  GGGGCGA-TTAGGTCACAGCTAAAGCAGTA-CCTAGGGCTTGGACATTCC  48

seq1  CCATGATTCCATG--AGGCAGTTGATCCTAGGCAACTGCTCCA-GCAG-C  94
      |||||||||||||   ||||||||||||||||||||||||||| |||| |
seq2  CCATGATTCCATGGAGGGCAGTTGATCCTAGGCAACTGCTCCAGGCAGAC  98

seq1  TCGGACAAAT-AATTGCATTTCA-TCTAAGTCTTTCATCATAA-CACAAT  141
      ||| |||||| |||||||||||| ||||||||||||||||||| ||||||
seq2  TCGAACAAATAAATTGCATTTCATTCTAAGTCTTTCATCATAACCACAAT  148

seq1  TACTTACACATTAGGAAAGCTCTCAGCTTAGGGAAAGATGAAAGTTTTAG  191
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  TACTTACACCTTAAGAAAGCTCTCAGCTTAGGGAAAGATGAAAGTTTTAG  198

seq1  AT-CCTAGA-CCATGGATTTAAAGGA-GGCGGAAACAAATTGGCTAATAC  238
      || |||||| |||||   |||||||| || ||||||||||||||||||||
seq2  ATCCCTAGACCCATGAGATTAAAGGAGGGGGGAAACAAATTGGCTAATAC  248

seq1  CTTAAACTG-ATAA--CCTGCCATTCTTTCAGGATA-CCTTTCAAAA-TT  283
      ||||||||| ||||  |||||||||||||||| ||| |||||||||| ||
seq2  CTTAAACTGAATAAACCCTGCCATTCTTTCAGAATACCCTTTCAAAATTT  298

seq1  ATTCCACTAAAGTTTATTTTT---CAAAAAAAAAAAATGTACTTTACATC  330
      ||||||||||| |||||||||    |||||||||||||||||||||||||
seq2  ATTCCACTAAAATTTATTTTTTCAAAAAAAAAAAAAATGTACTTTACATC  348

seq1  ATTGTATGTGATCACTTGTCAGTGTTCAGGTGTATTTTAGCAAAAACTAG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGTGATCACTTGTCAGTGTTCAGGTGTATTTTAGCAAAAACTAG  398

seq1  TGGATGCCCTAACTTAGATGGTTTTTGAAGCCTATACACTTGGTATTGTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCCTAACTTAGATGGTTTTTGAAGCCTATACACTTGGTATTGTT  448

seq1  TGGCCCTTAAGCTTTTACATCTCTTAGCATGGAGGACAAAGAAAGCTGTA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTAAGCTTTTACATCTCTTAGCATGGAGGACAAAGAAAGCTGTA  498

seq1  CATTGTTGCTTGAGAGTATGTACATTTTAGACCAGATTTGTATTTGCACA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGCTTGAGAGTATGTACATTTTAGACCAGATTTGTATTTGCACA  548

seq1  GTCAGTATGGCAAATGAGTGGACAATGTTAAATACACTATTGGATTTTTT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATGGCAAATGAGTGGACAATGTTAAATACACTATTGGATTTTTT  598

seq1  TTATTTTCTGTTTTGATTTCAGCTTATGCCCTGGCTGGAAAACCTCAATT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTGTTTTGATTTCAGCTTATGCCCTGGCTGGAAAACCTCAATT  648

seq1  TATGTTCATGACAGTGGGGATTTTTTTAAATGTCTACATTCTTTCTAATA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATGACAGTGGGGATTTTTTTAAATGTCTACATTCTTTCTAATA  698

seq1  AACTGTTGGAAGATTTCTTGGCTGTCCTTTTAAGTGTCTGTTTGCTGTAA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGGAAGATTTCTTGGCTGTCCTTTTAAGTGTCTGTTTGCTGTAA  748

seq1  TTTCATGTATTTACCCCTTACTGGAATGGAGTTTGGTTTTTTTTTTTTTT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTATTTACCCCTTACTGGAATGGAGTTTGGTTTTTTTTTTTTTT  798

seq1  TTGTTTTGTTTTTTTGAGGGAAAATTTGGACTGGTCCTGTTTGAACAAAG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTTGAGGGAAAATTTGGACTGGTCCTGTTTGAACAAAG  848

seq1  AGGCTTGCTGTACTGTCACAGGAAACCCTGTAAAGTGTGTCTGTAAATGG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCTGTACTGTCACAGGAAACCCTGTAAAGTGTGTCTGTAAATGG  898

seq1  GAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTGA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTGGGCACTTGGCAGCAGCCAGACAAGTGTTGTGACTTGACTGA  948

seq1  AATAAAAGTGAATGTGTTGTCCTCCTGTACATTTTCACTCCTGAATTAGC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTGAATGTGTTGTCCTCCTGTACATTTTCACTCCTGAATTAGC  998

seq1  AGTGTCACCTTGTTTACTGCTTTGATCCAGATTGAGAACCACTGACTGAC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACCTTGTTTACTGCTTTGATCCAGATTGAGAACCACTGACTGAC  1048

seq1  GTAAAAGTATGTTCCAGTGCTCTAAAGCTAATAGTGATAACGAACACCCC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTATGTTCCAGTGCTCTAAAGCTAATAGTGATAACGAACACCCC  1098

seq1  ACACTCATCATTTTAAGGAGATATTACCTGAATTC  1115
      |||||||||||||||||||||||||||||||||||
seq2  ACACTCATCATTTTAAGGAGATATTACCTGAATTC  1133